Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

29901675 .. 29904567

Gene Structure 2893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1232300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGACTTATCACCCAAGTCAGCCCAGAAGTTGTTTGAAGGAGATGGAGGAGCATATTACATTTGGTCGAGTTCAGATGTTCCAGTGCTTGGTGAGGCCAAGGTTGGTGCAGGCAAGCTTGTTCTTCAACCTCATGGCTTCGCTCTTCCTCACCATGCAGATTCCTCCAAACTGGGATATGTTCTTCAAGGTAATGATGGATTAGTAGGAATGGTCTTCCCTAACACATCAGAGGAGGTGGTGGTTAGGGTTAAGAAAGGAGATGTGATACCATTACCAGTTGGAACAATCTCATGGTGGTTCAACAATGTTGATCACTCTGAGGAGCTTGTTGTTGTTTTCATGGGTGAAACTGCCGGAGCCCACGTTCCCGGTCAATTTTCGTACTTTTTTATTGCCGGAACCCTAAGTATACTTGCAGGTTTCTCAACAGAATTTGTCAGCAAGTCCTTCAACATCACCGAGGATGAAGCTGATGGCATCACCAAAAGCCAGACTGGGGCTTTGATCATCAAGCTAGGTCAAGATGAAAAAGCCAAAATGCCCCTCCCCAATCTAAAACTCACCGACAAATTTGTTCACAACATCAGTACTAGTAGTACAACTACATTAACTGAAAAGGAATTTCCTTTTCTTAAACAAGCTGGGTTAAGTGTTAACCTCACAAAACTTGAGGCCAACGCAATCAGCTCTCCAATTTACACAGCCGATTCCATAGTCCAAGTGATTTATATTGCTCGAGGGAGTGGCCGGATACAGATCGTGGGTGTTAACGGTCAACGTTTGTTGGACGCGGAGGTAACTGCTGGGCAGCTGCTTGTGGTACCAACGTTCTTCATGGTTGCTAAACTTGCAGGACATACTGGGCTGGAGTGTTTCACTCTCATGACTAGTTCTCAGCCTGTCGTGGAAGACTTAGCTGGAAAGACATCAACATTGGGAGCATTATCACCGGAGGTGCTGCGAATATCCCTTAATATAACTCCAGAGCTAGAAAAACTTCTCAAGTCCAAGATTCGAAAGGTCCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

345

Amino Acids

36.92

Weight (kDa)

6.01

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	7 - 157	1.2e-16	Cupin
Cupin_1	PF00190	195 - 331	2.5e-18	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	823
AccB1I	GGYRCC	1 cut(s)	823
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	412
AccII	CGCG	1 cut(s)	794
AciI	CCGC	1 cut(s)	794
AclI	AACGTT	2 cut(s)	781, 830
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	3 cut(s)	434, 572, 623
AfaI	GTAC	4 cut(s)	386, 592, 601, 825
AfiI	CCNNNNNNNGG	2 cut(s)	89, 499
AgsI	TTSAA	5 cut(s)	38, 128, 188, 304, 454
AhlI	ACTAGT	2 cut(s)	593, 890
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	9 cut(s)	118, 328, 473, 517, 644, 690, 814, 920, 991
AluI	AGCT	9 cut(s)	118, 328, 473, 517, 644, 690, 814, 920, 991
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	3 cut(s)	96, 675, 748
ApeKI	GCWGC	3 cut(s)	811, 814, 961
ApoI	RAATTY	3 cut(s)	434, 572, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	487, 519
Asp700I	GAANNNNTTC	1 cut(s)	999
Asp718I	GGTACC	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	1024
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	8 cut(s)	3, 104, 143, 359, 451, 475, 556, 942
AsuII	TTCGAA	1 cut(s)	1018
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	1024
BaeI	ACNNNNGTAYC	2 cut(s)	815, 848
BanI	GGYRCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	2 cut(s)	208, 918
BbvI	GCAGC	3 cut(s)	801, 823, 948
BccI	CCATC	3 cut(s)	38, 191, 470
BciVI	GTATCC	1 cut(s)	747
BclI	TGATCA	2 cut(s)	313, 507
BcnI	CCSGG	1 cut(s)	372
BcuI	ACTAGT	2 cut(s)	593, 890
BfaI	CTAG	4 cut(s)	518, 594, 891, 992
BfuAI	ACCTGC	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	747
BisI	GCNGC	3 cut(s)	812, 815, 962
BlsI	GCNGC	3 cut(s)	813, 816, 963
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	1024
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	1 cut(s)	1024
BmiI	GGNNCC	3 cut(s)	361, 403, 825
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	3 cut(s)	182, 507, 873
BmsI	GCATC	1 cut(s)	489
BmuI	ACTGGG	3 cut(s)	182, 507, 873
BpiI	GAAGAC	2 cut(s)	208, 918
BpmI	CTGGAG	2 cut(s)	890, 969
Bpu14I	TTCGAA	1 cut(s)	1018
BpuEI	CTTGAG	2 cut(s)	692, 989
BpuMI	CCSGG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	758
BsaJI	CCNNGG	2 cut(s)	99, 462
BsaWI	WCCGGW	1 cut(s)	952
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 499
Bse1I	ACTGG	5 cut(s)	83, 177, 278, 502, 868
Bse8I	GATNNNNATC	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	99, 462
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	758
BseLI	CCNNNNNNNGG	2 cut(s)	89, 499
BseMII	CTCAG	2 cut(s)	312, 911
BseNI	ACTGG	5 cut(s)	83, 177, 278, 502, 868
BseRI	GAGGAG	3 cut(s)	63, 248, 338
BseXI	GCAGC	3 cut(s)	801, 823, 948
BseYI	CCCAGC	2 cut(s)	644, 806
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	794
BshFI	GGCC	3 cut(s)	98, 677, 750
BshNI	GGYRCC	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	5 cut(s)	357, 372, 399, 751, 953
BslI	CCNNNNNNNGG	2 cut(s)	89, 499
BsnI	GGCC	3 cut(s)	98, 677, 750
BsoBI	CYCGRG	1 cut(s)	738
Bsp119I	TTCGAA	1 cut(s)	1018
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	313, 507, 759, 1028
BspACI	CCGC	1 cut(s)	794
BspANI	GGCC	3 cut(s)	98, 677, 750
BspCNI	CTCAG	2 cut(s)	313, 910
BspFNI	CGCG	1 cut(s)	794
BspHI	TCATGA	2 cut(s)	885, 1031
BspLI	GGNNCC	3 cut(s)	361, 403, 825
BspMI	ACCTGC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	1018
BspT107I	GGYRCC	1 cut(s)	823
BsrI	ACTGG	5 cut(s)	83, 177, 278, 502, 868
BssECI	CCNNGG	2 cut(s)	99, 462
BssMI	GATC	4 cut(s)	313, 507, 759, 1028
BssNAI	GTATAC	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	99
Bst1107I	GTATAC	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	776
Bst6I	CTCTTC	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	1018
BstC8I	GCNNGC	2 cut(s)	112, 116
BstDEI	CTNAG	4 cut(s)	321, 407, 897, 916
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	794
BstKTI	GATC	4 cut(s)	316, 510, 762, 1031
BstMBI	GATC	4 cut(s)	313, 507, 759, 1028
BstMWI	GCNNNNNNNGC	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	370
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	3 cut(s)	801, 823, 948
BstV2I	GAAGAC	2 cut(s)	208, 918
BstZ17I	GTATAC	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	98, 677, 750
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	112, 116
CciI	TCATGA	2 cut(s)	885, 1031
Cfr13I	GGNCC	1 cut(s)	1024
CseI	GACGC	1 cut(s)	800
Csp6I	GTAC	4 cut(s)	385, 591, 600, 824
CviAII	CATG	7 cut(s)	134, 155, 294, 343, 838, 886, 1032
CviQI	GTAC	4 cut(s)	385, 591, 600, 824
DdeI	CTNAG	4 cut(s)	321, 407, 897, 916
DpnI	GATC	4 cut(s)	315, 509, 761, 1030
DpnII	GATC	4 cut(s)	313, 507, 759, 1028
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	1024
Eco88I	CYCGRG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	7 cut(s)	137, 158, 297, 346, 841, 889, 1035
FatI	CATG	7 cut(s)	133, 154, 293, 342, 837, 885, 1031
FbaI	TGATCA	2 cut(s)	313, 507
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	812, 815, 962
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	3 cut(s)	812, 815, 962
FspBI	CTAG	4 cut(s)	518, 594, 891, 992
GluI	GCNGC	3 cut(s)	812, 815, 962
GsaI	CCCAGC	2 cut(s)	648, 810
GsuI	CTGGAG	2 cut(s)	890, 969
HaeIII	GGCC	3 cut(s)	98, 677, 750
HapII	CCGG	5 cut(s)	357, 372, 399, 751, 953
HgaI	GACGC	1 cut(s)	800
Hin1II	CATG	7 cut(s)	137, 158, 297, 346, 841, 889, 1035
HincII	GTYRAC	3 cut(s)	658, 772, 779
HindII	GTYRAC	3 cut(s)	658, 772, 779
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	161, 710, 1015
HpaI	GTTAAC	2 cut(s)	658, 772
HpaII	CCGG	5 cut(s)	357, 372, 399, 751, 953
HphI	GGTGA	8 cut(s)	3, 104, 143, 359, 451, 475, 556, 942
Hpy166II	GTNNAC	5 cut(s)	413, 580, 658, 772, 779
Hpy188I	TCNGA	4 cut(s)	76, 232, 322, 1028
Hpy188III	TCNNGA	4 cut(s)	524, 886, 986, 1032
Hpy8I	GTNNAC	5 cut(s)	413, 580, 658, 772, 779
HpyAV	CCTTC	2 cut(s)	32, 460
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4IV	ACGT	3 cut(s)	366, 781, 830
HpyCH4V	TGCA	4 cut(s)	110, 158, 419, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	851
HpyF3I	CTNAG	4 cut(s)	321, 407, 897, 916
HpySE526I	ACGT	3 cut(s)	366, 781, 830
Hsp92II	CATG	7 cut(s)	137, 158, 297, 346, 841, 889, 1035
KpnI	GGTACC	1 cut(s)	827
Ksp22I	TGATCA	2 cut(s)	313, 507
KspAI	GTTAAC	2 cut(s)	658, 772
Kzo9I	GATC	4 cut(s)	313, 507, 759, 1028
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	4 cut(s)	50, 325, 359, 941
Lsp1109I	GCAGC	3 cut(s)	801, 823, 948
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	4 cut(s)	518, 594, 891, 992
MaeII	ACGT	3 cut(s)	366, 781, 830
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	4 cut(s)	315, 509, 761, 1030
MboI	GATC	4 cut(s)	313, 507, 759, 1028
MboII	GAAGA	6 cut(s)	116, 137, 176, 208, 826, 923
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	5 cut(s)	377, 434, 572, 623, 696
MmeI	TCCRAC	2 cut(s)	262, 768
MroXI	GAANNNNTTC	1 cut(s)	999
MseI	TTAA	7 cut(s)	252, 611, 636, 650, 657, 771, 975
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	814
MspI	CCGG	5 cut(s)	357, 372, 399, 751, 953
MspR9I	CCNGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	1 cut(s)	851
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	4 cut(s)	313, 507, 759, 1028
NlaIII	CATG	7 cut(s)	137, 158, 297, 346, 841, 889, 1035
NlaIV	GGNNCC	3 cut(s)	361, 403, 825
NspV	TTCGAA	1 cut(s)	1018
PaeR7I	CTCGAG	1 cut(s)	738
PagI	TCATGA	2 cut(s)	885, 1031
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	1024
PdmI	GAANNNNTTC	1 cut(s)	999
PfeI	GAWTC	3 cut(s)	161, 710, 1015
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	813, 816, 963
Psp1406I	AACGTT	2 cut(s)	781, 830
PspFI	CCCAGC	2 cut(s)	644, 806
PspN4I	GGNNCC	3 cut(s)	361, 403, 825
PspPI	GGNCC	1 cut(s)	1024
PspXI	VCTCGAGB	1 cut(s)	738
PvuII	CAGCTG	1 cut(s)	814
RsaI	GTAC	4 cut(s)	386, 592, 601, 825
RsaNI	GTAC	4 cut(s)	385, 591, 600, 824
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	7 cut(s)	252, 611, 636, 650, 657, 771, 975
SatI	GCNGC	3 cut(s)	812, 815, 962
Sau3AI	GATC	4 cut(s)	313, 507, 759, 1028
Sau96I	GGNCC	1 cut(s)	1024
ScaI	AGTACT	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	489
Sfr274I	CTCGAG	1 cut(s)	738
SfuI	TTCGAA	1 cut(s)	1018
SinI	GGWCC	1 cut(s)	1024
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	3 cut(s)	671, 738, 1004
SmoI	CTYRAG	3 cut(s)	671, 738, 1004
SpeI	ACTAGT	2 cut(s)	593, 890
Sse9I	AATT	5 cut(s)	377, 434, 572, 623, 696
SsiI	CCGC	1 cut(s)	794
SspMI	CTAG	4 cut(s)	518, 594, 891, 992
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	776
TaiI	ACGT	3 cut(s)	369, 784, 833
TaqI	TCGA	3 cut(s)	68, 739, 1018
TasI	AATT	5 cut(s)	377, 434, 572, 623, 696
TatI	WGTACW	2 cut(s)	590, 599
TfiI	GAWTC	3 cut(s)	161, 710, 1015
Tru1I	TTAA	7 cut(s)	252, 611, 636, 650, 657, 771, 975
Tru9I	TTAA	7 cut(s)	252, 611, 636, 650, 657, 771, 975
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	3 cut(s)	811, 814, 961
TspDTI	ATGAA	4 cut(s)	331, 483, 543, 826
TspRI	CASTG	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	1024
XapI	RAATTY	3 cut(s)	434, 572, 623
XhoI	CTCGAG	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	999
XspI	CTAG	4 cut(s)	518, 594, 891, 992
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.