Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Reverse (-)

35044964 .. 35048383

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCAGAGATGGATCTAACACCAAAGTCAGCGGTAGCGGCGTTCGAGGGAGATGGTGGAGGATATTACATATGGTCATTTCCGGCGCTTGGGGAGGCCAACGTTGGCGCCGGCAAGCTTGTATTGAAGCCTAGTGGTTTTGCTCTTCCTCACTATGCAGATTCTGCCAAACTGGGATATGTTCTTCAAGGTGAGGATGGACTAGTTGGAATGGTATTCCCCAACACATCAGATGAGGTAGTATTGAAGCTCAAGAAAGGAGACGTGATTCCGGTACCACTCGGAGCAGTCTCATGGTGGTTCAACAATGGCGGCTCATCCAACGACCTTGTTATCGTTTTCTTGGGAGAAACTACAAAGGCTTACACTCCTGGTCTGTTTACTTACTTCTTCATAGCAGGAACTCAAAGTCTTCTAGGAGGTTTCTCAACTGACTTCATTAGCAAGTCATTCAATATTACCAAAGATGAAGCAGATGAGGTCACCAAAAACCAGACAGGGGTTTTGCTAGTTAAGCTAGAACAGGGAAAGACCATGCCTAAGCCCAACGCACTCATCACCCAAAAACTTGTTCATCAACTCACTGTTAGTGCCACTTTGACTGAGAAGGAGTTTCCTTTTCTTAACCAGGCTGGGTTAAGTGCCAACCTCATAAAACTTGAAGCCTATGCAATTTCCTCTCCCATTTACACTACTGATTCTTCGGTTCAAGTGATCTATGTCGTTGGAGGAGGTGGTCGGGTCCAAATTGCGGGTCTTAATGGTCAGAGTGCGTTAGATGCGGAAGTAACTGCGGGTCACTTGATTGTTGTGCCTAGGTTTTTCATGGTAGCGAAACTTGCCGGGGAAAAAGGAATGGAGTGTTTCTCTGTCATTACAAGTTCCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

296

Amino Acids

31.41

Weight (kDa)

5.3

Isoelectric Point (pI)

25.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	26 - 157	3.8e-15	Cupin
Cupin_1	PF00190	196 - 291	1.1e-12	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	107, 274
AciI	CCGC	6 cut(s)	32, 38, 312, 752, 782, 794
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	3 cut(s)	89, 499, 751
AgsI	TTSAA	7 cut(s)	127, 188, 247, 304, 454, 662, 710
AhlI	ACTAGT	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	370, 627
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	3 cut(s)	118, 250, 517
AluI	AGCT	3 cut(s)	118, 250, 517
Alw26I	GTCTC	2 cut(s)	255, 295
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	96
ArsI	GACNNNNNNTTYG	4 cut(s)	487, 519, 739, 771
Asp718I	GGTACC	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	88, 110
AspS9I	GGNCC	1 cut(s)	742
AsuC2I	CCSGG	2 cut(s)	844, 886
AsuHPI	GGTGA	3 cut(s)	203, 475, 550
AvaII	GGWCC	1 cut(s)	742
AvrII	CCTAGG	1 cut(s)	815
BanI	GGYRCC	2 cut(s)	107, 274
BbsI	GAAGAC	1 cut(s)	404
BccI	CCATC	3 cut(s)	4, 47, 191
BciT130I	CCWGG	2 cut(s)	372, 629
BcnI	CCSGG	2 cut(s)	844, 886
BcoDI	GTCTC	2 cut(s)	255, 295
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	6 cut(s)	132, 203, 416, 509, 518, 816
BfoI	RGCGCY	2 cut(s)	89, 111
BisI	GCNGC	2 cut(s)	39, 313
BlnI	CCTAGG	1 cut(s)	815
BlsI	GCNGC	2 cut(s)	40, 314
Bme1390I	CCNGG	4 cut(s)	372, 629, 844, 886
Bme18I	GGWCC	1 cut(s)	742
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	3 cut(s)	109, 276, 743
BmrFI	CCNGG	4 cut(s)	372, 629, 844, 886
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	404
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
Bpu10I	CCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	844, 886
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	815, 843
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 499, 751
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	372, 629
BseDI	CCNNGG	2 cut(s)	815, 843
BseGI	GGATG	2 cut(s)	202, 317
BseLI	CCNNNNNNNGG	3 cut(s)	89, 499, 751
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	744
BseYI	CCCAGC	1 cut(s)	632
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	2 cut(s)	107, 274
BsiSI	CCGG	5 cut(s)	83, 111, 272, 843, 886
BslI	CCNNNNNNNGG	3 cut(s)	89, 499, 751
BsmAI	GTCTC	2 cut(s)	255, 295
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	13, 714
BspACI	CCGC	6 cut(s)	32, 38, 312, 752, 782, 794
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	3 cut(s)	109, 276, 743
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	2 cut(s)	107, 274
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	815, 843
BssMI	GATC	2 cut(s)	13, 714
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	815
Bst2UI	CCWGG	2 cut(s)	372, 629
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	112, 116
BstDEI	CTNAG	2 cut(s)	540, 603
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	202, 317
BstH2I	RGCGCY	2 cut(s)	89, 111
BstHHI	GCGC	2 cut(s)	88, 110
BstKTI	GATC	2 cut(s)	16, 717
BstMAI	GTCTC	2 cut(s)	255, 295
BstMBI	GATC	2 cut(s)	13, 714
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 164, 514, 779, 839
BstNI	CCWGG	2 cut(s)	372, 629
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	4 cut(s)	370, 627, 842, 884
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	202, 317
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	112, 116
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	2 cut(s)	88, 110
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	3 cut(s)	294, 535, 826
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	540, 603
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	2 cut(s)	15, 716
DpnII	GATC	2 cut(s)	13, 714
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	815
Eco47I	GGWCC	1 cut(s)	742
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	370, 627
EcoT14I	CCWWGG	1 cut(s)	815
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	815
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	3 cut(s)	297, 538, 829
FatI	CATG	3 cut(s)	293, 534, 825
FauI	CCCGC	2 cut(s)	745, 787
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	39, 313
FokI	GGATG	2 cut(s)	209, 304
Fsp4HI	GCNGC	2 cut(s)	39, 313
FspBI	CTAG	6 cut(s)	132, 203, 416, 509, 518, 816
GlaI	GCGC	2 cut(s)	87, 109
GluI	GCNGC	2 cut(s)	39, 313
GsaI	CCCAGC	1 cut(s)	636
HaeII	RGCGCY	2 cut(s)	89, 111
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	5 cut(s)	83, 111, 272, 843, 886
HhaI	GCGC	2 cut(s)	88, 110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	297, 538, 829
Hin6I	GCGC	2 cut(s)	86, 108
HinP1I	GCGC	2 cut(s)	86, 108
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	161, 268, 698
HpaII	CCGG	5 cut(s)	83, 111, 272, 843, 886
HphI	GGTGA	3 cut(s)	203, 475, 550
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	232, 284, 768
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	2 cut(s)	102, 264
HpyCH4V	TGCA	2 cut(s)	158, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 164, 514, 779, 839
HpyF3I	CTNAG	2 cut(s)	540, 603
HpySE526I	ACGT	2 cut(s)	102, 264
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	297, 538, 829
HspAI	GCGC	2 cut(s)	86, 108
KasI	GGCGCC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	13, 714
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	284
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	6 cut(s)	132, 203, 416, 509, 518, 816
MaeII	ACGT	2 cut(s)	102, 264
MaeIII	GTNAC	3 cut(s)	481, 787, 797
MalI	GATC	2 cut(s)	15, 716
MboI	GATC	2 cut(s)	13, 714
MboII	GAAGA	5 cut(s)	137, 176, 382, 404, 693
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	2 cut(s)	672, 747
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	3 cut(s)	187, 345, 706
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	4 cut(s)	513, 624, 638, 759
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	5 cut(s)	83, 111, 272, 843, 886
MspR9I	CCNGG	4 cut(s)	372, 629, 844, 886
MvaI	CCWGG	2 cut(s)	372, 629
MwoI	GCNNNNNNNGC	5 cut(s)	38, 164, 514, 779, 839
NaeI	GCCGGC	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	2 cut(s)	844, 886
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	2 cut(s)	13, 714
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	3 cut(s)	297, 538, 829
NlaIV	GGNNCC	3 cut(s)	109, 276, 743
NmuCI	GTSAC	2 cut(s)	481, 797
PciSI	GCTCTTC	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	161, 268, 698
PkrI	GCNGC	2 cut(s)	40, 314
PluTI	GGCGCC	1 cut(s)	111
Psp1406I	AACGTT	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	370, 627
PspEI	GGTNACC	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	2 cut(s)	370, 627
PspN4I	GGNNCC	3 cut(s)	109, 276, 743
PspPI	GGNCC	1 cut(s)	742
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	513, 624, 638, 759
SatI	GCNGC	2 cut(s)	39, 313
Sau3AI	GATC	2 cut(s)	13, 714
Sau96I	GGNCC	1 cut(s)	742
ScrFI	CCNGG	4 cut(s)	372, 629, 844, 886
SfaNI	GCATC	1 cut(s)	769
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	742
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	2 cut(s)	672, 747
SsiI	CCGC	6 cut(s)	32, 38, 312, 752, 782, 794
SspDI	GGCGCC	1 cut(s)	107
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	6 cut(s)	132, 203, 416, 509, 518, 816
StyD4I	CCNGG	4 cut(s)	370, 627, 842, 884
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	2 cut(s)	105, 267
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	672, 747
TauI	GCSGC	2 cut(s)	41, 315
TfiI	GAWTC	3 cut(s)	161, 268, 698
Tru1I	TTAA	4 cut(s)	513, 624, 638, 759
Tru9I	TTAA	4 cut(s)	513, 624, 638, 759
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	481, 797
Tsp45I	GTSAC	2 cut(s)	481, 797
TspDTI	ATGAA	5 cut(s)	382, 427, 483, 563, 814
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	742
XmaJI	CCTAGG	1 cut(s)	815
XspI	CTAG	6 cut(s)	132, 203, 416, 509, 518, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.