Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001971.1

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Reverse (-)

5196 .. 7746

Gene Structure 2551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001971.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atggcagctgagatggatctaacaccaaagtcagcggcagcggcgttcgagggagatggtggaggatattacatatggtcatttccggcacttggagaggccaatgttggcgccggcaagcttgtattgaagcctagtggttttgctcttcctcactctgcagattctgccaaactgggatatgttcttcaaggtgaggatggactagttggaatggtattccccaacacatcagaggaggtagtattgaagctcaagaaaggagacgtgattccgataccactcggatcagtctcatggtggttcaacaatggcgactcatccaacgaccttgttattgttttcttgggagaaactacaaaggcttacactcctggtctgtttacttacttcttcatagcaggaactcaaagtatgctcagaggtttctcgactgacttcattagcaagtcattcaatattaccaaagatgaagctgatgaggtcaccaaaaaccagacaggggttttgctagttaagctagaacagggaaagaccatgcctaagcccaacgcactcgtcacccacaaacttgttcatcaactcactattagtgccactttgactgagaaggagtttccctttcttaaccaagctgggttaagtgccaacctcataaaacttgaaccctatgcaatttcctctcccatttacactactgattcttcggttcaagtgatctatgtcgttagaggaggtggtcgggtccaaattgcgggtcttaatggtcagagtgcgttggatgcagaagtaactgcgggtcacttgatcgttgtgcctaggtttttcatggtagcgaaacttgccggggaaaaaggaatggagtgtttctctgtcattacaagttcccgcgctgtcccggaagacttaactggcaagacatcagtattgagggcattatcacctgaggtgctacaaatatccctaaatatacatccagagttgcagacaattctccaatcaaagattaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

337

Amino Acids

36.08

Weight (kDa)

5.62

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccII	CGCG	1 cut(s)	891
AciI	CCGC	5 cut(s)	35, 41, 755, 797, 889
AclWI	GGATC	2 cut(s)	24, 295
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	3 cut(s)	92, 502, 754
AgsI	TTSAA	7 cut(s)	130, 191, 250, 307, 457, 665, 713
AhlI	ACTAGT	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	6 cut(s)	8, 121, 253, 476, 520, 635
AluI	AGCT	6 cut(s)	8, 121, 253, 476, 520, 635
Alw26I	GTCTC	2 cut(s)	258, 298
AlwI	GGATC	2 cut(s)	24, 295
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	5, 38
ArsI	GACNNNNNNTTYG	4 cut(s)	490, 522, 742, 774
AspA2I	CCTAGG	1 cut(s)	818
AspLEI	GCGC	2 cut(s)	113, 893
AspS9I	GGNCC	1 cut(s)	745
AsuC2I	CCSGG	2 cut(s)	847, 899
AsuHPI	GGTGA	4 cut(s)	206, 478, 553, 933
AvaII	GGWCC	1 cut(s)	745
AvrII	CCTAGG	1 cut(s)	818
AxyI	CCTNAGG	1 cut(s)	945
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	909
BbvI	GCAGC	2 cut(s)	17, 50
BccI	CCATC	3 cut(s)	7, 50, 194
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	2 cut(s)	847, 899
BcoDI	GTCTC	2 cut(s)	258, 298
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	6 cut(s)	135, 206, 512, 521, 819, 1012
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	4 cut(s)	6, 36, 39, 42
BlnI	CCTAGG	1 cut(s)	818
BlsI	GCNGC	4 cut(s)	7, 37, 40, 43
Bme1390I	CCNGG	3 cut(s)	375, 847, 899
Bme18I	GGWCC	1 cut(s)	745
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	2 cut(s)	112, 746
BmrFI	CCNGG	3 cut(s)	375, 847, 899
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	909
BplI	GAGNNNNNCTC	2 cut(s)	854, 886
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	847, 899
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	818, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 502, 754
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	180, 916
Bse21I	CCTNAGG	1 cut(s)	945
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	818, 846
BseGI	GGATG	4 cut(s)	205, 320, 787, 973
BseLI	CCNNNNNNNGG	3 cut(s)	92, 502, 754
BseMII	CTCAG	3 cut(s)	433, 597, 936
BseNI	ACTGG	2 cut(s)	180, 916
BseRI	GAGGAG	2 cut(s)	251, 747
BseXI	GCAGC	2 cut(s)	17, 50
BseYI	CCCAGC	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	86, 114, 846, 899
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	3 cut(s)	92, 502, 754
BsmAI	GTCTC	2 cut(s)	258, 298
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	881
BsnI	GGCC	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	16, 287, 717, 807
BspACI	CCGC	5 cut(s)	35, 41, 755, 797, 889
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	3 cut(s)	432, 598, 937
BspFNI	CGCG	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	112, 746
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	2 cut(s)	24, 295
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	180, 916
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	818, 846
BssMI	GATC	4 cut(s)	16, 287, 717, 807
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	115, 119
BstDEI	CTNAG	5 cut(s)	9, 419, 543, 606, 945
BstEII	GGTNACC	1 cut(s)	484
BstF5I	GGATG	4 cut(s)	205, 320, 787, 973
BstFNI	CGCG	1 cut(s)	891
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 893
BstKTI	GATC	4 cut(s)	19, 290, 720, 810
BstMAI	GTCTC	2 cut(s)	258, 298
BstMBI	GATC	4 cut(s)	16, 287, 717, 807
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 167, 517, 782, 842
BstNI	CCWGG	1 cut(s)	375
BstPI	GGTNACC	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	373, 845, 897
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	2 cut(s)	17, 50
BstV2I	GAAGAC	1 cut(s)	909
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	945
BsuRI	GGCC	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	4 cut(s)	205, 320, 787, 973
Cac8I	GCNNGC	2 cut(s)	115, 119
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	113, 893
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	745
CviAII	CATG	3 cut(s)	297, 538, 829
DdeI	CTNAG	5 cut(s)	9, 419, 543, 606, 945
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	4 cut(s)	18, 289, 719, 809
DpnII	GATC	4 cut(s)	16, 287, 717, 807
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	818
Eco47I	GGWCC	1 cut(s)	745
Eco81I	CCTNAGG	1 cut(s)	945
Eco91I	GGTNACC	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	818
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	818
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	300, 541, 832
FaqI	GGGAC	1 cut(s)	881
FatI	CATG	3 cut(s)	296, 537, 828
FauI	CCCGC	3 cut(s)	748, 790, 896
FauNDI	CATATG	1 cut(s)	74
Fnu4HI	GCNGC	4 cut(s)	6, 36, 39, 42
FokI	GGATG	4 cut(s)	212, 307, 794, 960
Fsp4HI	GCNGC	4 cut(s)	6, 36, 39, 42
FspBI	CTAG	6 cut(s)	135, 206, 512, 521, 819, 1012
GlaI	GCGC	2 cut(s)	112, 892
GluI	GCNGC	4 cut(s)	6, 36, 39, 42
GsaI	CCCAGC	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	4 cut(s)	86, 114, 846, 899
HhaI	GCGC	2 cut(s)	113, 893
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	300, 541, 832
Hin6I	GCGC	2 cut(s)	111, 891
HinP1I	GCGC	2 cut(s)	111, 891
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	4 cut(s)	164, 271, 317, 701
HpaII	CCGG	4 cut(s)	86, 114, 846, 899
HphI	GGTGA	4 cut(s)	206, 478, 553, 933
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	5 cut(s)	235, 276, 287, 422, 771
Hpy188III	TCNNGA	3 cut(s)	256, 430, 977
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	604
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	161, 674, 785, 985
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 167, 517, 782, 842
HpyF3I	CTNAG	5 cut(s)	9, 419, 543, 606, 945
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	300, 541, 832
HspAI	GCGC	2 cut(s)	111, 891
KasI	GGCGCC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	16, 287, 717, 807
LguI	GCTCTTC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	17, 50
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	6 cut(s)	135, 206, 512, 521, 819, 1012
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	4 cut(s)	484, 559, 790, 800
MalI	GATC	4 cut(s)	18, 289, 719, 809
MboI	GATC	4 cut(s)	16, 287, 717, 807
MboII	GAAGA	5 cut(s)	140, 179, 385, 696, 914
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	3 cut(s)	675, 750, 990
Mly113I	GGCGCC	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	3 cut(s)	190, 348, 759
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	6 cut(s)	516, 627, 641, 762, 908, 1008
MspA1I	CMGCKG	3 cut(s)	8, 35, 41
MspI	CCGG	4 cut(s)	86, 114, 846, 899
MspR9I	CCNGG	3 cut(s)	375, 847, 899
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	5 cut(s)	41, 167, 517, 782, 842
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	111
NciI	CCSGG	2 cut(s)	847, 899
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	4 cut(s)	16, 287, 717, 807
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	300, 541, 832
NlaIV	GGNNCC	2 cut(s)	112, 746
NmuCI	GTSAC	3 cut(s)	484, 559, 800
PciSI	GCTCTTC	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	164, 271, 701
PfoI	TCCNGGA	1 cut(s)	897
PkrI	GCNGC	4 cut(s)	7, 37, 40, 43
PleI	GAGTC	1 cut(s)	311
PluTI	GGCGCC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	112, 746
PspPI	GGNCC	1 cut(s)	745
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	6 cut(s)	516, 627, 641, 762, 908, 1008
SatI	GCNGC	4 cut(s)	6, 36, 39, 42
Sau3AI	GATC	4 cut(s)	16, 287, 717, 807
Sau96I	GGNCC	1 cut(s)	745
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	3 cut(s)	375, 847, 899
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	745
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	3 cut(s)	675, 750, 990
SsiI	CCGC	5 cut(s)	35, 41, 755, 797, 889
SspDI	GGCGCC	1 cut(s)	110
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	6 cut(s)	135, 206, 512, 521, 819, 1012
StyD4I	CCNGG	3 cut(s)	373, 845, 897
StyI	CCWWGG	1 cut(s)	818
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	48, 431
TasI	AATT	3 cut(s)	675, 750, 990
TauI	GCSGC	2 cut(s)	38, 44
TfiI	GAWTC	3 cut(s)	164, 271, 701
Tru1I	TTAA	6 cut(s)	516, 627, 641, 762, 908, 1008
Tru9I	TTAA	6 cut(s)	516, 627, 641, 762, 908, 1008
TseFI	GTSAC	3 cut(s)	484, 559, 800
TseI	GCWGC	2 cut(s)	5, 38
Tsp45I	GTSAC	3 cut(s)	484, 559, 800
TspDTI	ATGAA	5 cut(s)	385, 430, 486, 566, 817
VpaK11BI	GGWCC	1 cut(s)	745
XmaJI	CCTAGG	1 cut(s)	818
XspI	CTAG	6 cut(s)	135, 206, 512, 521, 819, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.