Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028162.1

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 364

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028162.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcggagatagatctaacaccaaagttagcagcagtagagttcgagggagatggtggaagatatcacacatggtcagctccagcacttggcaaggccaaagttggtgccggcaagcttgttttaaagccgagtggttttgctcttcctcactatgcagattctgccaaactggggtatgttgttcaaggtgaggatggagtaattgggatggttttacccaacacatcagaggaggtggtgttgaagcttaagaaaggagatgtgattccggtaccagtcggggcagtctcctggtggttcaacaatggcgactcacccgatgaccttgttatcattttcttgggcgatactacaaaggcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

121

Amino Acids

12.74

Weight (kDa)

5.01

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	107, 274
AccB7I	CCANNNNNTGG	1 cut(s)	89
AciI	CCGC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	89, 174
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	188, 247, 304
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	80, 118, 250
AluI	AGCT	3 cut(s)	80, 118, 250
Alw26I	GTCTC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	203, 309
BanI	GGYRCC	2 cut(s)	107, 274
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	47, 191, 205
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	295
BfrI	CTTAAG	1 cut(s)	251
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	109, 276
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 174
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	177, 278
BseBI	CCWGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	202, 216
BseLI	CCNNNNNNNGG	2 cut(s)	89, 174
BseNI	ACTGG	2 cut(s)	177, 278
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	2 cut(s)	98, 362
BshNI	GGYRCC	2 cut(s)	107, 274
BsiSI	CCGG	2 cut(s)	111, 272
BslI	CCNNNNNNNGG	2 cut(s)	89, 174
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	98, 362
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	98, 362
BspLI	GGNNCC	2 cut(s)	109, 276
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	2 cut(s)	107, 274
BspTI	CTTAAG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	177, 278
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	112, 116
BstF5I	GGATG	2 cut(s)	202, 216
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	98, 362
BtsCI	GGATG	2 cut(s)	202, 216
Cac8I	GCNNGC	2 cut(s)	112, 116
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	6 cut(s)	80, 98, 118, 130, 250, 362
CviKI_1	RGCY	6 cut(s)	80, 98, 118, 130, 250, 362
CviQI	GTAC	1 cut(s)	275
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraI	TTTAAA	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	293
EcoRV	GATATC	1 cut(s)	65
FaeI	CATG	1 cut(s)	75
FaiI	YATR	3 cut(s)	73, 156, 180
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	209, 223
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	98, 362
HapII	CCGG	2 cut(s)	111, 272
Hin1II	CATG	1 cut(s)	75
HindIII	AAGCTT	2 cut(s)	116, 248
HinfI	GANTC	3 cut(s)	161, 268, 314
HpaII	CCGG	2 cut(s)	111, 272
HphI	GGTGA	2 cut(s)	203, 309
Hpy188I	TCNGA	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	75
KpnI	GGTACC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	7 cut(s)	96, 124, 158, 280, 285, 291, 307
Lsp1109I	GCAGC	1 cut(s)	44
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	72, 137
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	5 cut(s)	40, 159, 187, 226, 229
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	2 cut(s)	125, 252
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	2 cut(s)	111, 272
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	164
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	13
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	2 cut(s)	109, 276
NmeAIII	GCCGAG	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	161, 268
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	109, 276
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	125, 252
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	6 cut(s)	82, 120, 193, 240, 252, 330
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	293
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	161, 268
Tru1I	TTAA	2 cut(s)	125, 252
Tru9I	TTAA	2 cut(s)	125, 252
TseI	GCWGC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	89
Vha464I	CTTAAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.