Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

43781904 .. 43784021

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG346500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCAGCTGAGATGGATCTAACACCAAAGTCAGCGGCAGCGGCGTTCGAGGGAGATGGTGGAGGATATTACATATGGTCATTTCCGGCACTTGGAGAGGCCAACGTTGGCGCCGGCAAGCTTGTATTGAAGCCTAGTGGTTTTGCTCTTCCTCACTCTGCAGATTCTGCCAAACTGGGATATGTTCTTCAAGGAGAGGATGGACTAGTTGGAATGGTATTCCCCAACACATCAGAGGAGGTAGTATTGAAGCTAAAGAAAGGAGACGTGATTCCGATACCACTCGGAGCAGTCTCATGGTGGTTCAACAATGGCGGCTCATCCAACGACCTTGTTATTGTTTTCTTGGGAGAAACTACAAAGGCTTACACTCCTGGTCTGTTTACTTACTTCTTCATAGCAGGAACTCAAAGTATGCTCAGAGGTTTCTCGACTGACTTCATTAGCAAGTCATTCAATATTACCAAAGATGAAGCTGATGAGGTCACCAAAAACCAGACAGGGGTTTTGCTAGTTAAGCTAGAACAGGGAAAGACCATGCCTAAGCCCAACGCACTCGTCACCCACAAACTTGTTCATCAACTCACTATTAGTGCCACTTTGACTGAGAAGGAGTTTCCTTTTCTTAGCCAAGCTGGGTTAAGTGCCAACCTCATAAAACTTGAACCCTATGCAATTGCCTCTCCCATTTACACTACTGATTCTTCGGTTCAAGTGATCTATGTCGTTGGAGGAGGTGGTCGGGTCCAAATTGCGGGTCTTAATGGTCAGAGTGCGTTGGATGCAGAAGTAACTGCGGGTCACTTGATCGTTGTGCCCAGGTTTTTCATGGTAGCGAAACTTGCTGGGGAAAAAGGAATGGAGTGTTTCTCTGTCATTACAAGTTCCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

297

Amino Acids

31.51

Weight (kDa)

5.63

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	27 - 159	3.5e-15	Cupin
Cupin_1	PF00190	199 - 292	1.4e-12	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	5 cut(s)	35, 41, 315, 755, 797
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	3 cut(s)	92, 502, 754
AgsI	TTSAA	7 cut(s)	130, 191, 250, 307, 457, 665, 713
AhlI	ACTAGT	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	373, 818
AluBI	AGCT	6 cut(s)	8, 121, 253, 476, 520, 635
AluI	AGCT	6 cut(s)	8, 121, 253, 476, 520, 635
Alw26I	GTCTC	2 cut(s)	258, 298
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	5, 38
ArsI	GACNNNNNNTTYG	4 cut(s)	490, 522, 742, 774
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	745
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	2 cut(s)	478, 553
AvaII	GGWCC	1 cut(s)	745
BaeGI	GKGCMC	1 cut(s)	819
BanI	GGYRCC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	17, 50
BccI	CCATC	3 cut(s)	7, 50, 194
BciT130I	CCWGG	2 cut(s)	375, 820
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	2 cut(s)	258, 298
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	4 cut(s)	135, 206, 512, 521
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	5 cut(s)	6, 36, 39, 42, 316
BlsI	GCNGC	5 cut(s)	7, 37, 40, 43, 317
Bme1390I	CCNGG	3 cut(s)	375, 820, 889
Bme18I	GGWCC	1 cut(s)	745
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	2 cut(s)	112, 746
BmrFI	CCNGG	3 cut(s)	375, 820, 889
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	854, 886
Bpu10I	CCTNAGC	1 cut(s)	543
BpuMI	CCSGG	1 cut(s)	889
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 502, 754
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	375, 820
BseDI	CCNNGG	1 cut(s)	818
BseGI	GGATG	3 cut(s)	205, 320, 787
BseLI	CCNNNNNNNGG	3 cut(s)	92, 502, 754
BseMII	CTCAG	2 cut(s)	433, 597
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	2 cut(s)	251, 747
BseSI	GKGCMC	1 cut(s)	819
BseXI	GCAGC	2 cut(s)	17, 50
BseYI	CCCAGC	2 cut(s)	635, 845
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	86, 114, 889
BslI	CCNNNNNNNGG	3 cut(s)	92, 502, 754
BsmAI	GTCTC	2 cut(s)	258, 298
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	3 cut(s)	16, 717, 807
BspACI	CCGC	5 cut(s)	35, 41, 315, 755, 797
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	432, 598
BspLI	GGNNCC	2 cut(s)	112, 746
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	818
BssMI	GATC	3 cut(s)	16, 717, 807
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	375, 820
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	115, 119
BstDEI	CTNAG	5 cut(s)	9, 419, 543, 606, 626
BstEII	GGTNACC	1 cut(s)	484
BstF5I	GGATG	3 cut(s)	205, 320, 787
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	3 cut(s)	19, 720, 810
BstMAI	GTCTC	2 cut(s)	258, 298
BstMBI	GATC	3 cut(s)	16, 717, 807
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 167, 517, 782, 842
BstNI	CCWGG	2 cut(s)	375, 820
BstPI	GGTNACC	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	373, 818, 887
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	17, 50
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	3 cut(s)	205, 320, 787
Cac8I	GCNNGC	2 cut(s)	115, 119
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	745
CviAII	CATG	3 cut(s)	297, 538, 829
DdeI	CTNAG	5 cut(s)	9, 419, 543, 606, 626
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	3 cut(s)	18, 719, 809
DpnII	GATC	3 cut(s)	16, 717, 807
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	745
Eco91I	GGTNACC	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	373, 818
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	300, 541, 832
FatI	CATG	3 cut(s)	296, 537, 828
FauI	CCCGC	2 cut(s)	748, 790
FauNDI	CATATG	1 cut(s)	74
Fnu4HI	GCNGC	5 cut(s)	6, 36, 39, 42, 316
FokI	GGATG	3 cut(s)	212, 307, 794
Fsp4HI	GCNGC	5 cut(s)	6, 36, 39, 42, 316
FspBI	CTAG	4 cut(s)	135, 206, 512, 521
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	5 cut(s)	6, 36, 39, 42, 316
GsaI	CCCAGC	2 cut(s)	639, 849
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	3 cut(s)	86, 114, 889
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	300, 541, 832
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	164, 271, 701
HpaII	CCGG	3 cut(s)	86, 114, 889
HphI	GGTGA	2 cut(s)	478, 553
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	5 cut(s)	235, 276, 287, 422, 771
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	604
HpyCH4IV	ACGT	2 cut(s)	105, 267
HpyCH4V	TGCA	3 cut(s)	161, 674, 785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 167, 517, 782, 842
HpyF3I	CTNAG	5 cut(s)	9, 419, 543, 606, 626
HpySE526I	ACGT	2 cut(s)	105, 267
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	300, 541, 832
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	16, 717, 807
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	2 cut(s)	17, 50
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	4 cut(s)	135, 206, 512, 521
MaeII	ACGT	2 cut(s)	105, 267
MaeIII	GTNAC	4 cut(s)	484, 559, 790, 800
MalI	GATC	3 cut(s)	18, 719, 809
MboI	GATC	3 cut(s)	16, 717, 807
MboII	GAAGA	4 cut(s)	140, 179, 385, 696
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	2 cut(s)	675, 750
Mly113I	GGCGCC	1 cut(s)	111
MmeI	TCCRAC	4 cut(s)	190, 348, 709, 759
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	3 cut(s)	516, 641, 762
MspA1I	CMGCKG	3 cut(s)	8, 35, 41
MspI	CCGG	3 cut(s)	86, 114, 889
MspR9I	CCNGG	3 cut(s)	375, 820, 889
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	375, 820
MwoI	GCNNNNNNNGC	5 cut(s)	41, 167, 517, 782, 842
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	889
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	3 cut(s)	16, 717, 807
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	300, 541, 832
NlaIV	GGNNCC	2 cut(s)	112, 746
NmuCI	GTSAC	3 cut(s)	484, 559, 800
PciSI	GCTCTTC	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	164, 271, 701
PkrI	GCNGC	5 cut(s)	7, 37, 40, 43, 317
PluTI	GGCGCC	1 cut(s)	114
Psp1406I	AACGTT	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	373, 818
PspEI	GGTNACC	1 cut(s)	484
PspFI	CCCAGC	2 cut(s)	635, 845
PspGI	CCWGG	2 cut(s)	373, 818
PspN4I	GGNNCC	2 cut(s)	112, 746
PspPI	GGNCC	1 cut(s)	745
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	516, 641, 762
SatI	GCNGC	5 cut(s)	6, 36, 39, 42, 316
Sau3AI	GATC	3 cut(s)	16, 717, 807
Sau96I	GGNCC	1 cut(s)	745
ScrFI	CCNGG	3 cut(s)	375, 820, 889
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	745
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	2 cut(s)	675, 750
SsiI	CCGC	5 cut(s)	35, 41, 315, 755, 797
SspDI	GGCGCC	1 cut(s)	110
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	4 cut(s)	135, 206, 512, 521
StyD4I	CCNGG	3 cut(s)	373, 818, 887
TaiI	ACGT	2 cut(s)	108, 270
TaqI	TCGA	2 cut(s)	48, 431
TasI	AATT	2 cut(s)	675, 750
TauI	GCSGC	3 cut(s)	38, 44, 318
TfiI	GAWTC	3 cut(s)	164, 271, 701
Tru1I	TTAA	3 cut(s)	516, 641, 762
Tru9I	TTAA	3 cut(s)	516, 641, 762
TseFI	GTSAC	3 cut(s)	484, 559, 800
TseI	GCWGC	2 cut(s)	5, 38
Tsp45I	GTSAC	3 cut(s)	484, 559, 800
TspDTI	ATGAA	5 cut(s)	385, 430, 486, 566, 817
VpaK11BI	GGWCC	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XspI	CTAG	4 cut(s)	135, 206, 512, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.