Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006510

Physical Location & Seq

Genomic Coordinates Reverse (-)

24001242 .. 24009286

Gene Structure 8045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33210.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGTGGCGATTTCGAATCTCACAGGATGCGGTGGCCACGCCGCAGTCAGTTTCGGAGAGAGGCGGTACTTGAAGCTCCCTTCGCTCACCGACGGATTCAATTCTCGGATCTCTTTCCCCTCTACGACTCAGTTAGCTGTTGGCCATGTGAGCAAGACTGACAAAAAAATTGGTGTTCGTATGGCATTAGTCAATGAAAGGGTTGCACAAAGTGGAAGTTTGGCCAAGGCTTCTGAAATCCTGGCATTTGATCTTGTTCAAGGGGCACTTGTAAAATGGAGTTCTGTTATGGACAAGTCATTGCCCGAGCCGCCAACGGCTGTTTTTCTGCATGGAATTTTAGGTAGCAGGAAAAATTGGGGAACGTTCACTAGAAGATTGGCTCAGGAATTTCCAACGTGGCAGTTCCTATTGGTGGACCTACGGTGTCATGGTGATTCAGCCTCAATTAAGAAAACAGGCCCCAATACTGTTTCTTCCACTGCTCTTGATGTCTTGAAACTAGTTCGGCAGCTTAGAATAACACCTCGGGTTTTGGTTGGTCACAGTTTCGGAGGGAAAGTTGCCTTGAGCATGGTGGAGCAAGCTGCAAAGCCTCTTGCACGACCAGTCAGAGTTTGGGTTCTAGATTCTACTCCTGGAAAGGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCTGTCCTAAATACTCTACCCAAAGAAGTTTCCTCAAAGCGGGATGTTGTGCAAGCTCTAGTTCAAAAAGGATTCTCCAAAGATGTGGCACAGTGGGTGGTTACTAATCTTCGACCTAGTGGTCCTCTTGGTTCAACTCCGTCCACCTTCTCTTGGACATTCGATCTCAATGGGATTTCTGAAATGTATCAATCTTATGAAGAAATGAATTTATGGAAAATTGTTGAAGATGTGCCTGGAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGAAGCTTGCACAGATGGGCTCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTGGAGGAGGGAGGTGGAGTTGAAATGCATGTGCTTGAGGATGCAGGTCACTGGGTGCATGCGGATAATCCAGACGGGCTCTTTAGGATCCTTGCTTCTTCTTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

378

Amino Acids

41.21

Weight (kDa)

8.77

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	108 - 359	2.5e-19	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	108 - 212	7.2e-12	alpha/beta hydrolase fold
Hydrolase_4	PF12146	108 - 199	1e-05	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10030
fragaria_vesca	FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210
malus_domestica	MD08G1214000.v1.1 MD08G1214300.v1.1 MD15G1397200.v1.1
prunus_persica	Prupe.1G546000_v2.0.a1
pyrus_communis	pycom08g18360 pycom08g18370 pycom08g18410 pycom15g35690
rosa_chinensis	RchiOBHm_Chr7g0231591
rosa_laevigata	RLG00000001408
rosa_multiflora	Rmu_co8305357.1_g000001 Rmu_sc0001377.1_g000024
rosa_roxburghii	Rroxscaffold_3G00229070
rosa_rugosa	Rorug07G0267300
rosa_samantha	Rh7AG422100 Rh7BG396400 Rh7CG442300 Rh7DG414400
rosa_wichuraiana	Rw7G034800 Rw7G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	810
Acc36I	ACCTGC	1 cut(s)	1058
AciI	CCGC	6 cut(s)	30, 42, 64, 311, 730, 1085
AclI	AACGTT	1 cut(s)	365
AclWI	GGATC	3 cut(s)	116, 1105, 1118
AcoI	YGGCCR	3 cut(s)	34, 142, 222
AcsI	RAATTY	3 cut(s)	336, 389, 898
AdeI	CACNNNGTG	2 cut(s)	212, 1078
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	415, 729, 843
AgsI	TTSAA	9 cut(s)	73, 100, 260, 499, 755, 825, 917, 952, 1046
AhlI	ACTAGT	1 cut(s)	502
AjnI	CCWGG	4 cut(s)	240, 637, 652, 925
AluBI	AGCT	7 cut(s)	76, 137, 514, 587, 746, 966, 1018
AluI	AGCT	7 cut(s)	76, 137, 514, 587, 746, 966, 1018
AlwI	GGATC	3 cut(s)	116, 1105, 1118
Ama87I	CYCGRG	2 cut(s)	305, 528
AoxI	GGCC	4 cut(s)	34, 142, 222, 460
ApeKI	GCWGC	3 cut(s)	511, 587, 1007
ApoI	RAATTY	3 cut(s)	336, 389, 898
AseI	ATTAAT	1 cut(s)	686
AspS9I	GGNCC	4 cut(s)	418, 461, 670, 812
AsuHPI	GGTGA	2 cut(s)	79, 446
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	2 cut(s)	305, 528
AvaII	GGWCC	3 cut(s)	418, 670, 812
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	3 cut(s)	36, 144, 224
BamHI	GGATCC	1 cut(s)	1110
BanII	GRGCYC	2 cut(s)	982, 1104
BbvCI	CCTCAGC	1 cut(s)	1011
BbvI	GCAGC	3 cut(s)	523, 574, 994
BccI	CCATC	3 cut(s)	656, 681, 969
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	4 cut(s)	242, 639, 654, 927
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	6 cut(s)	372, 503, 626, 749, 807, 983
BfuAI	ACCTGC	1 cut(s)	1058
BglII	AGATCT	1 cut(s)	988
BisI	GCNGC	5 cut(s)	42, 311, 512, 588, 1008
BlsI	GCNGC	5 cut(s)	43, 312, 513, 589, 1009
Bme1390I	CCNGG	4 cut(s)	242, 639, 654, 927
Bme18I	GGWCC	3 cut(s)	418, 670, 812
BmeT110I	CYCGRG	2 cut(s)	305, 528
BmgT120I	GGNCC	4 cut(s)	418, 461, 670, 812
BmiI	GGNNCC	2 cut(s)	463, 1112
BmrFI	CCNGG	4 cut(s)	242, 639, 654, 927
BmrI	ACTGGG	1 cut(s)	1084
BmsI	GCATC	2 cut(s)	17, 1054
BmuI	ACTGGG	1 cut(s)	1084
BpmI	CTGGAG	2 cut(s)	948, 977
Bpu10I	CCTNAGC	2 cut(s)	384, 1011
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	589, 1079
BsaJI	CCNNGG	2 cut(s)	225, 527
BsaWI	WCCGGW	1 cut(s)	1128
BsaXI	ACNNNNNCTCC	4 cut(s)	546, 576, 1026, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 729, 843
Bse1I	ACTGG	2 cut(s)	608, 1079
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	4 cut(s)	242, 639, 654, 927
BseDI	CCNNGG	2 cut(s)	225, 527
BseGI	GGATG	5 cut(s)	32, 667, 673, 739, 1069
BseLI	CCNNNNNNNGG	3 cut(s)	415, 729, 843
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	3 cut(s)	143, 398, 1002
BseNI	ACTGG	2 cut(s)	608, 1079
BseRI	GAGGAG	2 cut(s)	1028, 1043
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	3 cut(s)	523, 574, 994
BshFI	GGCC	4 cut(s)	36, 144, 224, 462
BsiHKCI	CYCGRG	2 cut(s)	305, 528
BsiSI	CCGG	1 cut(s)	1129
BslI	CCNNNNNNNGG	3 cut(s)	415, 729, 843
BsnI	GGCC	4 cut(s)	36, 144, 224, 462
BsoBI	CYCGRG	2 cut(s)	305, 528
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	3 cut(s)	268, 982, 1104
Bsp143I	GATC	5 cut(s)	108, 250, 853, 988, 1110
BspACI	CCGC	6 cut(s)	30, 42, 64, 311, 730, 1085
BspANI	GGCC	4 cut(s)	36, 144, 224, 462
BspCNI	CTCAG	3 cut(s)	142, 397, 1003
BspLI	GGNNCC	2 cut(s)	463, 1112
BspMI	ACCTGC	1 cut(s)	1058
BspPI	GGATC	3 cut(s)	116, 1105, 1118
BspT104I	TTCGAA	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	608, 1079
BssECI	CCNNGG	2 cut(s)	225, 527
BssMI	GATC	5 cut(s)	108, 250, 853, 988, 1110
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	4 cut(s)	242, 639, 654, 927
Bst4CI	ACNGT	4 cut(s)	426, 472, 548, 783
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	585, 744, 968, 1020, 1083
BstDEI	CTNAG	4 cut(s)	129, 384, 515, 1011
BstF5I	GGATG	5 cut(s)	32, 667, 673, 739, 1069
BstKTI	GATC	5 cut(s)	111, 253, 856, 991, 1113
BstMBI	GATC	5 cut(s)	108, 250, 853, 988, 1110
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 150, 310
BstNI	CCWGG	4 cut(s)	242, 639, 654, 927
BstNSI	RCATGY	2 cut(s)	1055, 1085
BstSCI	CCNGG	4 cut(s)	240, 637, 652, 925
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	3 cut(s)	523, 574, 994
BstX2I	RGATCY	3 cut(s)	108, 988, 1110
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	3 cut(s)	108, 988, 1110
BsuRI	GGCC	4 cut(s)	36, 144, 224, 462
BtsCI	GGATG	5 cut(s)	32, 667, 673, 739, 1069
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	480, 788, 1072
BveI	ACCTGC	1 cut(s)	1058
Cac8I	GCNNGC	5 cut(s)	585, 744, 968, 1020, 1083
Cfr13I	GGNCC	4 cut(s)	418, 461, 670, 812
Csp6I	GTAC	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	8 cut(s)	146, 332, 431, 574, 938, 1004, 1052, 1082
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	4 cut(s)	129, 384, 515, 1011
DpnI	GATC	5 cut(s)	110, 252, 855, 990, 1112
DpnII	GATC	5 cut(s)	108, 250, 853, 988, 1110
DraIII	CACNNNGTG	2 cut(s)	212, 1078
DrdI	GACNNNNNNGTC	1 cut(s)	810
DseDI	GACNNNNNNGTC	1 cut(s)	810
EaeI	YGGCCR	3 cut(s)	34, 142, 222
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	982, 1104
Eco47I	GGWCC	3 cut(s)	418, 670, 812
Eco88I	CYCGRG	2 cut(s)	305, 528
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	4 cut(s)	240, 637, 652, 925
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	1053
EcoT38I	GRGCYC	2 cut(s)	982, 1104
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	8 cut(s)	149, 335, 434, 577, 941, 1007, 1055, 1085
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	8 cut(s)	145, 331, 430, 573, 937, 1003, 1051, 1081
FauI	CCCGC	1 cut(s)	723
Fnu4HI	GCNGC	5 cut(s)	42, 311, 512, 588, 1008
FokI	GGATG	5 cut(s)	39, 660, 674, 746, 1076
FriOI	GRGCYC	2 cut(s)	982, 1104
Fsp4HI	GCNGC	5 cut(s)	42, 311, 512, 588, 1008
FspBI	CTAG	6 cut(s)	372, 503, 626, 749, 807, 983
GluI	GCNGC	5 cut(s)	42, 311, 512, 588, 1008
GsuI	CTGGAG	2 cut(s)	948, 977
HaeIII	GGCC	4 cut(s)	36, 144, 224, 462
HapII	CCGG	1 cut(s)	1129
Hin1II	CATG	8 cut(s)	149, 335, 434, 577, 941, 1007, 1055, 1085
HindIII	AAGCTT	1 cut(s)	964
HinfI	GANTC	7 cut(s)	16, 96, 127, 437, 629, 762, 1000
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	2 cut(s)	79, 446
Hpy166II	GTNNAC	4 cut(s)	369, 418, 834, 943
Hpy188I	TCNGA	6 cut(s)	56, 108, 235, 554, 614, 871
Hpy188III	TCNNGA	8 cut(s)	386, 488, 496, 626, 949, 983, 994, 1094
Hpy8I	GTNNAC	4 cut(s)	369, 418, 834, 943
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	90, 847
HpyCH4III	ACNGT	4 cut(s)	426, 472, 548, 783
HpyCH4IV	ACGT	2 cut(s)	365, 398
HpyCH4V	TGCA	9 cut(s)	206, 331, 590, 602, 742, 970, 1051, 1067, 1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 150, 310
HpyF3I	CTNAG	4 cut(s)	129, 384, 515, 1011
HpySE526I	ACGT	2 cut(s)	365, 398
Hsp92II	CATG	8 cut(s)	149, 335, 434, 577, 941, 1007, 1055, 1085
Kzo9I	GATC	5 cut(s)	108, 250, 853, 988, 1110
LmnI	GCTCC	3 cut(s)	81, 580, 1015
Lsp1109I	GCAGC	3 cut(s)	523, 574, 994
LweI	GCATC	2 cut(s)	17, 1054
MaeI	CTAG	6 cut(s)	372, 503, 626, 749, 807, 983
MaeII	ACGT	2 cut(s)	365, 398
MaeIII	GTNAC	3 cut(s)	542, 790, 1070
MalI	GATC	5 cut(s)	110, 252, 855, 990, 1112
MboI	GATC	5 cut(s)	108, 250, 853, 988, 1110
MboII	GAAGA	7 cut(s)	387, 468, 791, 902, 929, 998, 1113
MflI	RGATCY	3 cut(s)	108, 988, 1110
MhlI	GDGCHC	3 cut(s)	268, 982, 1104
MlsI	TGGCCA	3 cut(s)	36, 144, 224
MluCI	AATT	9 cut(s)	100, 168, 336, 355, 389, 447, 683, 898, 909
MluNI	TGGCCA	3 cut(s)	36, 144, 224
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	419
Mox20I	TGGCCA	3 cut(s)	36, 144, 224
Mph1103I	ATGCAT	1 cut(s)	1053
MscI	TGGCCA	3 cut(s)	36, 144, 224
MseI	TTAA	2 cut(s)	450, 686
Msp20I	TGGCCA	3 cut(s)	36, 144, 224
MspI	CCGG	1 cut(s)	1129
MspR9I	CCNGG	4 cut(s)	242, 639, 654, 927
MvaI	CCWGG	4 cut(s)	242, 639, 654, 927
MwoI	GCNNNNNNNGC	3 cut(s)	82, 150, 310
NdeII	GATC	5 cut(s)	108, 250, 853, 988, 1110
NlaIII	CATG	8 cut(s)	149, 335, 434, 577, 941, 1007, 1055, 1085
NlaIV	GGNNCC	2 cut(s)	463, 1112
NmuCI	GTSAC	2 cut(s)	542, 1070
NsiI	ATGCAT	1 cut(s)	1053
NspI	RCATGY	2 cut(s)	1055, 1085
NspV	TTCGAA	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	1085
PfeI	GAWTC	6 cut(s)	16, 96, 437, 629, 762, 1000
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	5 cut(s)	43, 312, 513, 589, 1009
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	686
Psp1406I	AACGTT	1 cut(s)	365
Psp6I	CCWGG	4 cut(s)	240, 637, 652, 925
PspGI	CCWGG	4 cut(s)	240, 637, 652, 925
PspN4I	GGNNCC	2 cut(s)	463, 1112
PspPI	GGNCC	4 cut(s)	418, 461, 670, 812
PsuI	RGATCY	3 cut(s)	108, 988, 1110
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	450, 686
SatI	GCNGC	5 cut(s)	42, 311, 512, 588, 1008
Sau3AI	GATC	5 cut(s)	108, 250, 853, 988, 1110
Sau96I	GGNCC	4 cut(s)	418, 461, 670, 812
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	4 cut(s)	242, 639, 654, 927
SduI	GDGCHC	3 cut(s)	268, 982, 1104
SfaNI	GCATC	2 cut(s)	17, 1054
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	3 cut(s)	418, 670, 812
SmlI	CTYRAG	2 cut(s)	568, 1058
SmoI	CTYRAG	2 cut(s)	568, 1058
SpeI	ACTAGT	1 cut(s)	502
SphI	GCATGC	1 cut(s)	1085
Sse9I	AATT	9 cut(s)	100, 168, 336, 355, 389, 447, 683, 898, 909
SsiI	CCGC	6 cut(s)	30, 42, 64, 311, 730, 1085
SspMI	CTAG	6 cut(s)	372, 503, 626, 749, 807, 983
StyD4I	CCNGG	4 cut(s)	240, 637, 652, 925
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	4 cut(s)	426, 472, 548, 783
TaiI	ACGT	2 cut(s)	368, 401
TaqI	TCGA	3 cut(s)	14, 802, 852
TasI	AATT	9 cut(s)	100, 168, 336, 355, 389, 447, 683, 898, 909
TauI	GCSGC	2 cut(s)	44, 313
TfiI	GAWTC	6 cut(s)	16, 96, 437, 629, 762, 1000
Tru1I	TTAA	2 cut(s)	450, 686
Tru9I	TTAA	2 cut(s)	450, 686
TscAI	CASTG	3 cut(s)	487, 788, 1079
TseFI	GTSAC	2 cut(s)	542, 1070
TseI	GCWGC	3 cut(s)	511, 587, 1007
Tsp45I	GTSAC	2 cut(s)	542, 1070
TspDTI	ATGAA	4 cut(s)	210, 903, 911, 992
TspGWI	ACGGA	2 cut(s)	108, 819
TspRI	CASTG	3 cut(s)	487, 788, 1079
VpaK11BI	GGWCC	3 cut(s)	418, 670, 812
VspI	ATTAAT	1 cut(s)	686
XapI	RAATTY	3 cut(s)	336, 389, 898
XbaI	TCTAGA	2 cut(s)	625, 982
XceI	RCATGY	2 cut(s)	1055, 1085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	615
XspI	CTAG	6 cut(s)	372, 503, 626, 749, 807, 983
Zsp2I	ATGCAT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.