Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006510

Physical Location & Seq

Genomic Coordinates Forward (+)

18594751 .. 18597505

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCGCACAGTGGGTGGTTACTAATCTTCGACCAACCAATTCTCTTGGTTCATCACCATCAACCTTTTCATGGGTGTTTGATCCGAAGGGAATCGCTGAAATGTATAAATCTTATGAAGAAACAAATTTATGGGAAAATTGTTGAAGATGTGCCTTGGGGTGTCCATGTGAACTTTTTGAAAGCAGAAACGAGCTTGCACAGATGGGCTTTAGGAGATCTCCAGAGAATTCATGCGGCTAAGGAGCTTGCTGCTGAGGAAGCAGGTGGAGTGGAAATGCATGTCCTTGAGGATGCAGGCCACTGGTCCGTGCTGATAATCCAGACGAGCTGTTTAGGATCCTTTCCTCTTCTTTTTAAAGCAATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

124

Amino Acids

13.94

Weight (kDa)

6.78

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10030
fragaria_vesca	FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210
malus_domestica	MD08G1214000.v1.1 MD08G1214300.v1.1 MD15G1397200.v1.1
prunus_persica	Prupe.1G546000_v2.0.a1
pyrus_communis	pycom08g18360 pycom08g18370 pycom08g18410 pycom15g35690
rosa_chinensis	RchiOBHm_Chr7g0231591
rosa_laevigata	RLG00000001408
rosa_multiflora	Rmu_co8305357.1_g000001 Rmu_sc0001377.1_g000024
rosa_roxburghii	Rroxscaffold_3G00229070
rosa_rugosa	Rorug07G0267300
rosa_samantha	Rh7AG422100 Rh7BG396400 Rh7CG442300 Rh7DG414400
rosa_wichuraiana	Rw7G034800 Rw7G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	3 cut(s)	76, 333, 346
AcsI	RAATTY	2 cut(s)	126, 228
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	146, 181
AluBI	AGCT	3 cut(s)	195, 247, 330
AluI	AGCT	3 cut(s)	195, 247, 330
AlwI	GGATC	3 cut(s)	76, 333, 346
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	126, 228
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	66, 198
BfuAI	ACCTGC	1 cut(s)	254
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	237, 252
BlsI	GCNGC	2 cut(s)	238, 253
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	340
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	2 cut(s)	240, 255
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	81, 217, 338
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	3 cut(s)	76, 333, 346
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	81, 217, 338
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	197, 249, 298
BstDEI	CTNAG	2 cut(s)	240, 255
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	84, 220, 341
BstMBI	GATC	3 cut(s)	81, 217, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	217, 338
BstYI	RGATCY	2 cut(s)	217, 338
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	16, 301
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	197, 249, 298
Cfr13I	GGNCC	1 cut(s)	306
CviAII	CATG	4 cut(s)	71, 167, 233, 281
CviJI	RGCY	6 cut(s)	195, 209, 239, 247, 300, 330
CviKI_1	RGCY	6 cut(s)	195, 209, 239, 247, 300, 330
DdeI	CTNAG	2 cut(s)	240, 255
DpnI	GATC	3 cut(s)	83, 219, 340
DpnII	GATC	3 cut(s)	81, 217, 338
DraI	TTTAAA	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	4 cut(s)	74, 170, 236, 284
FaiI	YATR	7 cut(s)	72, 107, 116, 132, 168, 234, 282
FatI	CATG	4 cut(s)	70, 166, 232, 280
Fnu4HI	GCNGC	2 cut(s)	237, 252
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	237, 252
GluI	GCNGC	2 cut(s)	237, 252
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	4 cut(s)	74, 170, 236, 284
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	223, 322
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	199, 280, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	240, 255
Hsp92II	CATG	4 cut(s)	74, 170, 236, 284
Kzo9I	GATC	3 cut(s)	81, 217, 338
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	236, 249, 282, 289, 335
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	3 cut(s)	83, 219, 340
MboI	GATC	3 cut(s)	81, 217, 338
MboII	GAAGA	4 cut(s)	19, 130, 158, 341
MflI	RGATCY	2 cut(s)	217, 338
MluCI	AATT	4 cut(s)	39, 126, 138, 228
MnlI	CCTC	3 cut(s)	250, 283, 357
Mph1103I	ATGCAT	1 cut(s)	282
MseI	TTAA	2 cut(s)	357, 370
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	3 cut(s)	81, 217, 338
NlaIII	CATG	4 cut(s)	74, 170, 236, 284
NlaIV	GGNNCC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	238, 253
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	217, 338
SaqAI	TTAA	2 cut(s)	357, 370
SatI	GCNGC	2 cut(s)	237, 252
Sau3AI	GATC	3 cut(s)	81, 217, 338
Sau96I	GGNCC	1 cut(s)	306
SetI	ASST	5 cut(s)	67, 197, 249, 268, 332
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	39, 126, 138, 228
SsiI	CCGC	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	30
TasI	AATT	4 cut(s)	39, 126, 138, 228
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	357, 370
Tru9I	TTAA	2 cut(s)	357, 370
TscAI	CASTG	2 cut(s)	16, 308
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	41, 59, 131, 221
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	16, 308
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	126, 228
XceI	RCATGY	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.