Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006510

Physical Location & Seq

Genomic Coordinates Forward (+)

18591350 .. 18593937

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGGCGATTTCGAATCTTGAGGGGTGCAGTCACGGCGGGAACTCAGTCATTTTCGGAGAGAGGAGGCTACAGTTCCGGTCAACTCCTGGATTGAAAACTCGGATCTCTTGGCCCTCTAAGATAGAATCAGTTAGCAGTTGGTCAATAGGCAAATCAGATAAGAATTCCCGTGTTCGTACGGCATTAGTTGGTGAGAAGATTGCACGAAGTGGAGATTTTTCCAGGCCTTCTGACATCCCGGCATTTGATCTTGTTCAAGGAGCACTTGTAAAATGGAGTCCGGATGTGGTTGTGGACAGGTCATTACCTGAGCCTCCAACAGCTGTTTTTCTGCATGGAATTGTACGTAGCAGGAAGAACTGGGGAACCTTCACCAGGAGATTGGCACAAGAATTTCCGACATGGCAGTTTCTGTTAGTGGACCTGTGGTGTCATGGTGATTCAGCATCAAGTAAGAAAAGTGGACCCCATAGTGTTTCATCCACTGCTCTTGATGTCCTAAAACTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

172

Amino Acids

18.79

Weight (kDa)

10.01

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10030
fragaria_vesca	FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210
malus_domestica	MD08G1214000.v1.1 MD08G1214300.v1.1 MD15G1397200.v1.1
prunus_persica	Prupe.1G546000_v2.0.a1
pyrus_communis	pycom08g18360 pycom08g18370 pycom08g18410 pycom15g35690
rosa_chinensis	RchiOBHm_Chr7g0231591
rosa_laevigata	RLG00000001408
rosa_multiflora	Rmu_co8305357.1_g000001 Rmu_sc0001377.1_g000024
rosa_roxburghii	Rroxscaffold_3G00229070
rosa_rugosa	Rorug07G0267300
rosa_samantha	Rh7AG422100 Rh7BG396400 Rh7CG442300 Rh7DG414400
rosa_wichuraiana	Rw7G034800 Rw7G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	2 cut(s)	5, 39
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	166, 395
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	2 cut(s)	181, 348
AfiI	CCNNNNNNNGG	2 cut(s)	378, 508
AgsI	TTSAA	2 cut(s)	97, 260
AjnI	CCWGG	3 cut(s)	88, 224, 377
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	415
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	2 cut(s)	113, 227
ApoI	RAATTY	2 cut(s)	166, 395
AspS9I	GGNCC	3 cut(s)	114, 424, 467
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	206, 367, 452
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	424, 467
Bbv12I	GWGCWC	1 cut(s)	268
BceAI	ACGGC	2 cut(s)	52, 198
BciT130I	CCWGG	3 cut(s)	90, 226, 379
BcnI	CCSGG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	4 cut(s)	90, 226, 242, 379
Bme18I	GGWCC	2 cut(s)	424, 467
BmgT120I	GGNCC	3 cut(s)	114, 424, 467
BmiI	GGNNCC	2 cut(s)	370, 469
BmrFI	CCNGG	4 cut(s)	90, 226, 242, 379
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	350
BsaWI	WCCGGW	2 cut(s)	78, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 508
Bse1I	ACTGG	2 cut(s)	368, 513
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	3 cut(s)	90, 226, 379
BseGI	GGATG	3 cut(s)	237, 292, 482
BseLI	CCNNNNNNNGG	2 cut(s)	378, 508
BseMII	CTCAG	2 cut(s)	60, 303
BseNI	ACTGG	2 cut(s)	368, 513
BseRI	GAGGAG	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	115, 229
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	79, 242, 284
BsiWI	CGTACG	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	378, 508
BsnI	GGCC	2 cut(s)	115, 229
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	105, 250
BspACI	CCGC	2 cut(s)	5, 39
BspANI	GGCC	2 cut(s)	115, 229
BspCNI	CTCAG	2 cut(s)	59, 304
BspEI	TCCGGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	370, 469
BspPI	GGATC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	368, 513
BssMI	GATC	2 cut(s)	105, 250
Bst2UI	CCWGG	3 cut(s)	90, 226, 379
Bst4CI	ACNGT	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	46, 120, 312
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	237, 292, 482
BstKTI	GATC	2 cut(s)	108, 253
BstMBI	GATC	2 cut(s)	105, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	3 cut(s)	90, 226, 379
BstSCI	CCNGG	4 cut(s)	88, 224, 240, 377
BstSFI	CTRYAG	1 cut(s)	71
BstSNI	TACGTA	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	115, 229
BtsCI	GGATG	3 cut(s)	237, 292, 482
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	114, 424, 467
Csp6I	GTAC	2 cut(s)	180, 347
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	3 cut(s)	338, 405, 437
CviJI	RGCY	5 cut(s)	70, 115, 229, 316, 326
CviKI_1	RGCY	5 cut(s)	70, 115, 229, 316, 326
CviQI	GTAC	2 cut(s)	180, 347
DdeI	CTNAG	3 cut(s)	46, 120, 312
DpnI	GATC	2 cut(s)	107, 252
DpnII	GATC	2 cut(s)	105, 250
DraIII	CACNNNGTG	1 cut(s)	212
Eco105I	TACGTA	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	424, 467
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	88, 224, 377
FaeI	CATG	3 cut(s)	341, 408, 440
FaiI	YATR	4 cut(s)	339, 406, 438, 474
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	3 cut(s)	337, 404, 436
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	224, 299, 469
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	115, 229
HapII	CCGG	3 cut(s)	79, 242, 284
Hin1II	CATG	3 cut(s)	341, 408, 440
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	4 cut(s)	16, 128, 280, 443
HpaII	CCGG	3 cut(s)	79, 242, 284
HphI	GGTGA	3 cut(s)	206, 367, 452
Hpy166II	GTNNAC	4 cut(s)	84, 298, 424, 467
Hpy188I	TCNGA	5 cut(s)	59, 105, 160, 235, 402
Hpy188III	TCNNGA	3 cut(s)	20, 284, 494
Hpy8I	GTNNAC	4 cut(s)	84, 298, 424, 467
HpyAV	CCTTC	2 cut(s)	240, 382
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	30, 206, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	3 cut(s)	46, 120, 312
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	341, 408, 440
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	105, 250
LmnI	GCTCC	1 cut(s)	263
LweI	GCATC	1 cut(s)	458
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	2 cut(s)	107, 252
MboI	GATC	2 cut(s)	105, 250
MboII	GAAGA	2 cut(s)	211, 370
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	3 cut(s)	166, 342, 395
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	2 cut(s)	344, 425
MnlI	CCTC	5 cut(s)	16, 57, 60, 127, 327
MroI	TCCGGA	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	79, 242, 284
MspR9I	CCNGG	4 cut(s)	90, 226, 242, 379
MvaI	CCWGG	3 cut(s)	90, 226, 379
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	105, 250
NlaIII	CATG	3 cut(s)	341, 408, 440
NlaIV	GGNNCC	2 cut(s)	370, 469
NmuCI	GTSAC	1 cut(s)	32
NspV	TTCGAA	1 cut(s)	14
PceI	AGGCCT	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	16, 128, 443
Pfl23II	CGTACG	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	350
Psp6I	CCWGG	3 cut(s)	88, 224, 377
PspGI	CCWGG	3 cut(s)	88, 224, 377
PspLI	CGTACG	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	370, 469
PspPI	GGNCC	3 cut(s)	114, 424, 467
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	181, 348
RsaNI	GTAC	2 cut(s)	180, 347
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	105, 250
Sau96I	GGNCC	3 cut(s)	114, 424, 467
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	4 cut(s)	90, 226, 242, 379
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	6 cut(s)	305, 313, 328, 352, 374, 429
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	2 cut(s)	424, 467
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SnaBI	TACGTA	1 cut(s)	350
Sse9I	AATT	3 cut(s)	166, 342, 395
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	2 cut(s)	5, 39
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	4 cut(s)	88, 224, 240, 377
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	14
TasI	AATT	3 cut(s)	166, 342, 395
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	16, 128, 443
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	424, 467
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	2 cut(s)	166, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.