Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006510

Physical Location & Seq

Genomic Coordinates Reverse (-)

58254654 .. 58262492

Gene Structure 7839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG414400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGGCGATTTCGAATCTCGCCGGATGCGGTCACGCCGCCGGGAGGAGCAGCGCAGTCATTTTCGGAGAGAGGAGGTACTCCGAGCTCCGTTCACTTCCCGGTTTGAATTCTCGGATCTCTTTTCCCTCTAAGACTCAGTTAGCTGTTGGCCACTTGGGCAAGGCTGACAAAAGACTTGGTGTTCGTATGGCATTAGTCAATGACAGGGTTGCACAAAGTGGAAGTTTGGCCAAGGCTTCTGAAATCCTGGCATTTGATCTTGTTCAAGGGGCACTTGTAAAATGGAGTTCTGTTATGGACAAGTCATTGCCCGAGCCCCCAACAGCTGTTTTTCTGCATGGAATTCTAGGTAGCAGGAAAAATTGGGGAACATTCACTAGGAGATTGGCACAGGAATTTCCAACGTGGCAGTTCCTATTGGTGGACCTGCGGTGTCATGGTGATTCAGCCTCAGTTAAGAAAACAGGCCCCCATAATGTTTCTTCAACTGCTCTTGATGTCTTAAAACTAGTTCGGCAGCTTAGAATAACACCTCGAGTTTTGGTTGGTCACAGTTTCGGGGGGAAAGTTGCCTTGAGCATGGTGGAGCAAGCTGCAAAGCCCCTTGCACGACCAGTCAGAGTTTGGGTTCTAGATGCTACTCCTGGAAAGGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCTGTCCTAAGTACTCTACCCAAAGAGGTTTCCTCAAAGCGGGATGTTGTGGAAGCTTTAGTTCAAAAAGGATTCTCCAAAGATGTGGCACAGTGGGTGGTTACTAATCTTCGACCTAGTGGTCCTCTTGGTTCAACACCTTCCACCTTCTCTTGGACATTCGATCTCAATGGAATTTCTGAAATGTATCAATCTTATGAAGAAACAAATCTATGGAAAATTGTAGAAGATGTGCCCCGAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCTCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTTGAGGAGGGAGGTGGAGTTGAAATGCATGTCCTTGAGGATGCAGGTCACTGGGTGCATGCGGATAATCCCGATGGGCTCTTTAGGATTCTTTCTTCTTCTTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

380

Amino Acids

41.5

Weight (kDa)

9.0

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	111 - 372	6.1e-20	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	111 - 215	7e-11	alpha/beta hydrolase fold
Hydrolase_4	PF12146	111 - 212	4.2e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10030
fragaria_vesca	FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210
malus_domestica	MD08G1214000.v1.1 MD08G1214300.v1.1 MD15G1397200.v1.1
prunus_persica	Prupe.1G546000_v2.0.a1
pyrus_communis	pycom08g18360 pycom08g18370 pycom08g18410 pycom15g35690
rosa_chinensis	RchiOBHm_Chr7g0231591
rosa_laevigata	RLG00000001408
rosa_multiflora	Rmu_co8305357.1_g000001 Rmu_sc0001377.1_g000024
rosa_roxburghii	Rroxscaffold_3G00229070
rosa_rugosa	Rorug07G0267300
rosa_samantha	Rh7AG422100 Rh7BG396400 Rh7CG442300 Rh7DG414400
rosa_wichuraiana	Rw7G034800 Rw7G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	819
Acc36I	ACCTGC	2 cut(s)	438, 1067
AciI	CCGC	6 cut(s)	5, 30, 39, 433, 739, 1094
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	2 cut(s)	151, 231
AcsI	RAATTY	4 cut(s)	109, 345, 398, 873
AdeI	CACNNNGTG	2 cut(s)	221, 1087
AfaI	GTAC	2 cut(s)	80, 712
AfiI	CCNNNNNNNGG	4 cut(s)	45, 424, 738, 852
AgsI	TTSAA	7 cut(s)	109, 269, 489, 764, 834, 961, 1055
AhlI	ACTAGT	1 cut(s)	511
AjnI	CCWGG	3 cut(s)	249, 646, 661
AluBI	AGCT	8 cut(s)	88, 146, 329, 523, 596, 755, 975, 1027
AluI	AGCT	8 cut(s)	88, 146, 329, 523, 596, 755, 975, 1027
Alw21I	GWGCWC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	3 cut(s)	314, 537, 936
AoxI	GGCC	3 cut(s)	151, 231, 469
ApeKI	GCWGC	4 cut(s)	51, 520, 596, 1016
ApoI	RAATTY	4 cut(s)	109, 345, 398, 873
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AseI	ATTAAT	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	4 cut(s)	427, 470, 679, 821
AsuC2I	CCSGG	2 cut(s)	43, 102
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	3 cut(s)	314, 537, 936
AvaII	GGWCC	3 cut(s)	427, 679, 821
BaeGI	GKGCMC	2 cut(s)	277, 936
BalI	TGGCCA	2 cut(s)	153, 233
BanII	GRGCYC	4 cut(s)	90, 321, 991, 1113
Bbv12I	GWGCWC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	4 cut(s)	63, 532, 583, 1003
BccI	CCATC	4 cut(s)	665, 690, 978, 1100
BciT130I	CCWGG	3 cut(s)	251, 648, 663
BcnI	CCSGG	2 cut(s)	43, 102
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	6 cut(s)	350, 381, 512, 635, 816, 992
BfuAI	ACCTGC	2 cut(s)	438, 1067
BglI	GCCNNNNNGGC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	6 cut(s)	6, 39, 52, 521, 597, 1017
BlsI	GCNGC	6 cut(s)	7, 40, 53, 522, 598, 1018
BmcAI	AGTACT	1 cut(s)	712
Bme1390I	CCNGG	5 cut(s)	43, 102, 251, 648, 663
Bme18I	GGWCC	3 cut(s)	427, 679, 821
BmeT110I	CYCGRG	3 cut(s)	314, 537, 936
BmgT120I	GGNCC	4 cut(s)	427, 470, 679, 821
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	5 cut(s)	43, 102, 251, 648, 663
BmrI	ACTGGG	1 cut(s)	1093
BmsI	GCATC	3 cut(s)	17, 628, 1063
BmuI	ACTGGG	1 cut(s)	1093
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	1 cut(s)	986
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	598, 1088
BpuMI	CCSGG	2 cut(s)	43, 102
BsaJI	CCNNGG	2 cut(s)	234, 937
BsaXI	ACNNNNNCTCC	2 cut(s)	1035, 1065
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 424, 738, 852
Bse1I	ACTGG	3 cut(s)	617, 1088, 1138
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	3 cut(s)	251, 648, 663
BseDI	CCNNGG	2 cut(s)	234, 937
BseGI	GGATG	5 cut(s)	32, 676, 682, 748, 1078
BseLI	CCNNNNNNNGG	4 cut(s)	45, 424, 738, 852
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	3 cut(s)	152, 468, 1011
BseNI	ACTGG	3 cut(s)	617, 1088, 1138
BseRI	GAGGAG	4 cut(s)	61, 88, 1037, 1052
BseSI	GKGCMC	2 cut(s)	277, 936
BseXI	GCAGC	4 cut(s)	63, 532, 583, 1003
BshFI	GGCC	3 cut(s)	153, 233, 471
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	3 cut(s)	314, 537, 936
BsiSI	CCGG	3 cut(s)	24, 42, 102
BslI	CCNNNNNNNGG	4 cut(s)	45, 424, 738, 852
BsnI	GGCC	3 cut(s)	153, 233, 471
BsoBI	CYCGRG	3 cut(s)	314, 537, 936
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	6 cut(s)	90, 277, 321, 936, 991, 1113
Bsp143I	GATC	4 cut(s)	117, 259, 862, 997
BspACI	CCGC	6 cut(s)	5, 30, 39, 433, 739, 1094
BspANI	GGCC	3 cut(s)	153, 233, 471
BspCNI	CTCAG	3 cut(s)	151, 467, 1012
BspLI	GGNNCC	1 cut(s)	472
BspMI	ACCTGC	2 cut(s)	438, 1067
BspPI	GGATC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	617, 1088, 1138
BssECI	CCNNGG	2 cut(s)	234, 937
BssMI	GATC	4 cut(s)	117, 259, 862, 997
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	251, 648, 663
Bst4CI	ACNGT	2 cut(s)	557, 792
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	594, 977, 1029, 1092
BstDEI	CTNAG	6 cut(s)	132, 138, 454, 524, 707, 1020
BstF5I	GGATG	5 cut(s)	32, 676, 682, 748, 1078
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	4 cut(s)	120, 262, 865, 1000
BstMBI	GATC	4 cut(s)	117, 259, 862, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	3 cut(s)	251, 648, 663
BstNSI	RCATGY	2 cut(s)	1064, 1094
BstSCI	CCNGG	5 cut(s)	41, 100, 249, 646, 661
BstSLI	GKGCMC	2 cut(s)	277, 936
BstV1I	GCAGC	4 cut(s)	63, 532, 583, 1003
BstX2I	RGATCY	2 cut(s)	117, 997
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	2 cut(s)	117, 997
BsuRI	GGCC	3 cut(s)	153, 233, 471
BtsCI	GGATG	5 cut(s)	32, 676, 682, 748, 1078
BtsIMutI	CAGTG	2 cut(s)	797, 1081
BveI	ACCTGC	2 cut(s)	438, 1067
Cac8I	GCNNGC	4 cut(s)	594, 977, 1029, 1092
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	427, 470, 679, 821
Csp6I	GTAC	2 cut(s)	79, 711
CviAII	CATG	7 cut(s)	341, 440, 583, 947, 1013, 1061, 1091
CviQI	GTAC	2 cut(s)	79, 711
DdeI	CTNAG	6 cut(s)	132, 138, 454, 524, 707, 1020
DpnI	GATC	4 cut(s)	119, 261, 864, 999
DpnII	GATC	4 cut(s)	117, 259, 862, 997
DraIII	CACNNNGTG	2 cut(s)	221, 1087
DrdI	GACNNNNNNGTC	1 cut(s)	819
DseDI	GACNNNNNNGTC	1 cut(s)	819
EaeI	YGGCCR	2 cut(s)	151, 231
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	4 cut(s)	90, 321, 991, 1113
Eco47I	GGWCC	3 cut(s)	427, 679, 821
Eco53kI	GAGCTC	1 cut(s)	88
Eco88I	CYCGRG	3 cut(s)	314, 537, 936
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRI	GAATTC	2 cut(s)	109, 345
EcoRII	CCWGG	3 cut(s)	249, 646, 661
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	1062
EcoT38I	GRGCYC	4 cut(s)	90, 321, 991, 1113
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	7 cut(s)	344, 443, 586, 950, 1016, 1064, 1094
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	7 cut(s)	340, 439, 582, 946, 1012, 1060, 1090
FauI	CCCGC	1 cut(s)	732
Fnu4HI	GCNGC	6 cut(s)	6, 39, 52, 521, 597, 1017
FokI	GGATG	5 cut(s)	39, 669, 683, 755, 1085
FriOI	GRGCYC	4 cut(s)	90, 321, 991, 1113
Fsp4HI	GCNGC	6 cut(s)	6, 39, 52, 521, 597, 1017
FspBI	CTAG	6 cut(s)	350, 381, 512, 635, 816, 992
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	6 cut(s)	6, 39, 52, 521, 597, 1017
GsuI	CTGGAG	1 cut(s)	986
HaeIII	GGCC	3 cut(s)	153, 233, 471
HapII	CCGG	3 cut(s)	24, 42, 102
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	7 cut(s)	344, 443, 586, 950, 1016, 1064, 1094
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	6 cut(s)	16, 136, 446, 771, 1009, 1120
HpaII	CCGG	3 cut(s)	24, 42, 102
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	95, 427, 952
Hpy188I	TCNGA	6 cut(s)	68, 85, 117, 244, 623, 880
Hpy188III	TCNNGA	6 cut(s)	497, 635, 958, 992, 1003, 1103
Hpy8I	GTNNAC	3 cut(s)	95, 427, 952
HpyAV	CCTTC	2 cut(s)	849, 856
HpyCH4III	ACNGT	2 cut(s)	557, 792
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	8 cut(s)	215, 340, 599, 611, 979, 1060, 1076, 1090
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	6 cut(s)	132, 138, 454, 524, 707, 1020
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	7 cut(s)	344, 443, 586, 950, 1016, 1064, 1094
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	117, 259, 862, 997
LmnI	GCTCC	5 cut(s)	48, 93, 589, 972, 1024
Lsp1109I	GCAGC	4 cut(s)	63, 532, 583, 1003
LweI	GCATC	3 cut(s)	17, 628, 1063
MaeI	CTAG	6 cut(s)	350, 381, 512, 635, 816, 992
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	4 cut(s)	32, 551, 799, 1079
MalI	GATC	4 cut(s)	119, 261, 864, 999
MboI	GATC	4 cut(s)	117, 259, 862, 997
MboII	GAAGA	7 cut(s)	477, 800, 911, 938, 1007, 1119, 1122
MflI	RGATCY	2 cut(s)	117, 997
MhlI	GDGCHC	6 cut(s)	90, 277, 321, 936, 991, 1113
MlsI	TGGCCA	2 cut(s)	153, 233
MluCI	AATT	7 cut(s)	109, 345, 364, 398, 692, 873, 918
MluNI	TGGCCA	2 cut(s)	153, 233
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	428
Mox20I	TGGCCA	2 cut(s)	153, 233
Mph1103I	ATGCAT	1 cut(s)	1062
MscI	TGGCCA	2 cut(s)	153, 233
MseI	TTAA	3 cut(s)	459, 506, 695
Msp20I	TGGCCA	2 cut(s)	153, 233
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	24, 42, 102
MspR9I	CCNGG	5 cut(s)	43, 102, 251, 648, 663
MvaI	CCWGG	3 cut(s)	251, 648, 663
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	2 cut(s)	43, 102
NdeII	GATC	4 cut(s)	117, 259, 862, 997
NlaIII	CATG	7 cut(s)	344, 443, 586, 950, 1016, 1064, 1094
NlaIV	GGNNCC	1 cut(s)	472
NmuCI	GTSAC	3 cut(s)	32, 551, 1079
NsiI	ATGCAT	1 cut(s)	1062
NspI	RCATGY	2 cut(s)	1064, 1094
NspV	TTCGAA	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	1094
PaeR7I	CTCGAG	1 cut(s)	537
PfeI	GAWTC	5 cut(s)	16, 446, 771, 1009, 1120
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	6 cut(s)	7, 40, 53, 522, 598, 1018
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PshBI	ATTAAT	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	249, 646, 661
PspGI	CCWGG	3 cut(s)	249, 646, 661
PspN4I	GGNNCC	1 cut(s)	472
PspPI	GGNCC	4 cut(s)	427, 470, 679, 821
PspXI	VCTCGAGB	1 cut(s)	537
PsuI	RGATCY	2 cut(s)	117, 997
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	80, 712
RsaNI	GTAC	2 cut(s)	79, 711
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	459, 506, 695
SatI	GCNGC	6 cut(s)	6, 39, 52, 521, 597, 1017
Sau3AI	GATC	4 cut(s)	117, 259, 862, 997
Sau96I	GGNCC	4 cut(s)	427, 470, 679, 821
ScaI	AGTACT	1 cut(s)	712
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	5 cut(s)	43, 102, 251, 648, 663
SduI	GDGCHC	6 cut(s)	90, 277, 321, 936, 991, 1113
SfaNI	GCATC	3 cut(s)	17, 628, 1063
Sfr274I	CTCGAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	3 cut(s)	427, 679, 821
SlaI	CTCGAG	1 cut(s)	537
SmlI	CTYRAG	3 cut(s)	537, 577, 1067
SmoI	CTYRAG	3 cut(s)	537, 577, 1067
SpeI	ACTAGT	1 cut(s)	511
SphI	GCATGC	1 cut(s)	1094
Sse9I	AATT	7 cut(s)	109, 345, 364, 398, 692, 873, 918
SsiI	CCGC	6 cut(s)	5, 30, 39, 433, 739, 1094
SspMI	CTAG	6 cut(s)	350, 381, 512, 635, 816, 992
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	5 cut(s)	41, 100, 249, 646, 661
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	557, 792
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	14, 538, 811, 861
TasI	AATT	7 cut(s)	109, 345, 364, 398, 692, 873, 918
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	2 cut(s)	8, 41
TfiI	GAWTC	5 cut(s)	16, 446, 771, 1009, 1120
Tru1I	TTAA	3 cut(s)	459, 506, 695
Tru9I	TTAA	3 cut(s)	459, 506, 695
TscAI	CASTG	2 cut(s)	797, 1088
TseFI	GTSAC	3 cut(s)	32, 551, 1079
TseI	GCWGC	4 cut(s)	51, 520, 596, 1016
Tsp45I	GTSAC	3 cut(s)	32, 551, 1079
TspDTI	ATGAA	2 cut(s)	912, 1001
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	797, 1088
VpaK11BI	GGWCC	3 cut(s)	427, 679, 821
VspI	ATTAAT	1 cut(s)	695
XapI	RAATTY	4 cut(s)	109, 345, 398, 873
XbaI	TCTAGA	2 cut(s)	634, 991
XceI	RCATGY	2 cut(s)	1064, 1094
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XhoI	CTCGAG	1 cut(s)	537
XspI	CTAG	6 cut(s)	350, 381, 512, 635, 816, 992
ZrmI	AGTACT	1 cut(s)	712
Zsp2I	ATGCAT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.