RLG00000001408

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006510
Physical Location & Seq
Forward (+)
15229140 .. 15236156
7017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001408

Sequence Viewer

Length: 1140 bp
ATGGCGGCGATTTCGAATCTCGCCGGATGCGGTCACGCCGCCGGGAGGAGAAGCGCAGTCAGTTTCGGAGAGAGGAGGTACTCCGAGCTCCGTTCACTTCCCGGTTTGAATTCTCGGATCTCTTTTCCCTCTAAGACTCAGTTAGCTGTTGGCCACTTGGGCAAGGACAAGAAACTTGGTGTTCGTATGGCATTAGTCAACGACAGGGTTGCACAAAGTGGAAGTTTGGCCAAGGCTTCAGAAATCCTGGCATTTGATCTTGTTCAAGGGGCACTTGTGAAATGGAGTTCTGTTATGGACAAGTCATTGCCCGAGCCCCCAACGGCTGTTTTTCTGCATGGAATTCTAGGTAGCAGGAAAAATTGGGGAACATTCACTAGGAGATTGGCACAGGAATTTCCAACGTGGCAGTTCCTATTGGTGGACTTGCGGTGTCATGGTGATTCAGCCTCAGTTAAGAAAACAGGCCCCAATAATGTTTCTTCAACTGCTCTGGATGTCTTAAAACTAGTTCGGCAGCTTAGAATAACACCTCGAGTTTTGGTTGGTCACAGTTTTGGGGGGAAAGTTGCCTTGAGCATGGTGGAGCAAGCTGCAAAGCCTCTTGCACGACCAGTCAGAGTTTGGGTTCTAGACGCTACTCCTGGAAAGGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCTGTCCTAAGTACTCTACCCAAAGAGGTTTCCTCAAAGCGGGATGTTGTGGAAGCTTTAGTTCAAAAAGGATTCTCCAAGGATGTGGCACAGTGGGTGGTTACTAATCTTCAACCTAGTGGTCCTCTTGGTTCAACACCATCCACCTTCTCTTGGACATTCGATCTCAATGGAATTTCTGAAATGTATCAATCTTATGAAGAAACAAATTTATGGAAAATTGTAGAAGATGTGCCCCAAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCTCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTTGAGGAGGGAGGTGGAGTTGAAATGCATGTCCTTGAGGATGCAGGTCACTGGGTGCATGCAGATAATCCGGATGGGCTCTTTAGGATTCTTTCTTCTTCTTTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

380

Amino Acids

41.36

Weight (kDa)

8.77

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 110 - 371 1.4e-19 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 110 - 214 5.3e-11 alpha/beta hydrolase fold
Hydrolase_4 PF12146 110 - 213 3.8e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1064
AccIII TCCGGA 1 cut(s) 1099
AciI CCGC 5 cut(s) 5, 30, 39, 430, 736
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 2 cut(s) 151, 228
AcsI RAATTY 5 cut(s) 109, 342, 395, 870, 904
AcuI CTGAAG 1 cut(s) 222
AdeI CACNNNGTG 2 cut(s) 218, 1084
AfaI GTAC 2 cut(s) 80, 709
AfiI CCNNNNNNNGG 4 cut(s) 45, 421, 735, 849
AgsI TTSAA 8 cut(s) 109, 266, 486, 761, 809, 831, 958, 1052
AhlI ACTAGT 1 cut(s) 508
AjnI CCWGG 3 cut(s) 246, 643, 658
AluBI AGCT 7 cut(s) 88, 146, 520, 593, 752, 972, 1024
AluI AGCT 7 cut(s) 88, 146, 520, 593, 752, 972, 1024
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 2 cut(s) 311, 534
Aor13HI TCCGGA 1 cut(s) 1099
AoxI GGCC 3 cut(s) 151, 228, 466
ApeKI GCWGC 3 cut(s) 517, 593, 1013
ApoI RAATTY 5 cut(s) 109, 342, 395, 870, 904
AseI ATTAAT 1 cut(s) 692
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 467, 676, 818
AsuC2I CCSGG 2 cut(s) 43, 102
AsuHPI GGTGA 1 cut(s) 452
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 2 cut(s) 311, 534
AvaII GGWCC 2 cut(s) 676, 818
BaeGI GKGCMC 2 cut(s) 274, 933
BalI TGGCCA 2 cut(s) 153, 230
BanII GRGCYC 4 cut(s) 90, 318, 988, 1110
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 3 cut(s) 529, 580, 1000
BccI CCATC 5 cut(s) 662, 687, 844, 975, 1097
BceAI ACGGC 1 cut(s) 339
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 3 cut(s) 248, 645, 660
BcnI CCSGG 2 cut(s) 43, 102
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 6 cut(s) 347, 378, 509, 632, 813, 989
BfuAI ACCTGC 1 cut(s) 1064
BglI GCCNNNNNGGC 1 cut(s) 159
BglII AGATCT 1 cut(s) 994
BisI GCNGC 5 cut(s) 6, 39, 518, 594, 1014
BlsI GCNGC 5 cut(s) 7, 40, 519, 595, 1015
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 5 cut(s) 43, 102, 248, 645, 660
Bme18I GGWCC 2 cut(s) 676, 818
BmeT110I CYCGRG 2 cut(s) 311, 534
BmgT120I GGNCC 3 cut(s) 467, 676, 818
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 5 cut(s) 43, 102, 248, 645, 660
BmrI ACTGGG 1 cut(s) 1090
BmsI GCATC 2 cut(s) 17, 1060
BmuI ACTGGG 1 cut(s) 1090
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 983
Bpu10I CCTNAGC 1 cut(s) 1017
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 2 cut(s) 595, 1085
BpuMI CCSGG 2 cut(s) 43, 102
BsaJI CCNNGG 3 cut(s) 231, 774, 934
BsaWI WCCGGW 1 cut(s) 1099
BsaXI ACNNNNNCTCC 2 cut(s) 1032, 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 421, 735, 849
Bse1I ACTGG 3 cut(s) 614, 1085, 1135
Bse3DI GCAATG 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 1099
BseBI CCWGG 3 cut(s) 248, 645, 660
BseDI CCNNGG 3 cut(s) 231, 774, 934
BseGI GGATG 9 cut(s) 32, 502, 673, 679, 745, 784, 836, 1075, 1108
BseLI CCNNNNNNNGG 4 cut(s) 45, 421, 735, 849
BseMI GCAATG 1 cut(s) 305
BseMII CTCAG 3 cut(s) 152, 465, 1008
BseNI ACTGG 3 cut(s) 614, 1085, 1135
BseRI GAGGAG 4 cut(s) 61, 88, 1034, 1049
BseSI GKGCMC 2 cut(s) 274, 933
BseXI GCAGC 3 cut(s) 529, 580, 1000
BshFI GGCC 3 cut(s) 153, 230, 468
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 2 cut(s) 311, 534
BsiSI CCGG 4 cut(s) 24, 42, 102, 1100
BslI CCNNNNNNNGG 4 cut(s) 45, 421, 735, 849
BsnI GGCC 3 cut(s) 153, 230, 468
BsoBI CYCGRG 2 cut(s) 311, 534
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 6 cut(s) 90, 274, 318, 933, 988, 1110
Bsp13I TCCGGA 1 cut(s) 1099
Bsp143I GATC 4 cut(s) 117, 256, 859, 994
BspACI CCGC 5 cut(s) 5, 30, 39, 430, 736
BspANI GGCC 3 cut(s) 153, 230, 468
BspCNI CTCAG 3 cut(s) 151, 464, 1009
BspEI TCCGGA 1 cut(s) 1099
BspLI GGNNCC 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 1064
BspPI GGATC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 305
BsrI ACTGG 3 cut(s) 614, 1085, 1135
BssECI CCNNGG 3 cut(s) 231, 774, 934
BssMI GATC 4 cut(s) 117, 256, 859, 994
BssT1I CCWWGG 3 cut(s) 231, 774, 934
Bst2UI CCWGG 3 cut(s) 248, 645, 660
Bst4CI ACNGT 2 cut(s) 554, 789
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 591, 974, 1026, 1089
BstDEI CTNAG 6 cut(s) 132, 138, 451, 521, 704, 1017
BstF5I GGATG 9 cut(s) 32, 502, 673, 679, 745, 784, 836, 1075, 1108
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 120, 259, 862, 997
BstMBI GATC 4 cut(s) 117, 256, 859, 994
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 3 cut(s) 248, 645, 660
BstNSI RCATGY 2 cut(s) 1061, 1091
BstSCI CCNGG 5 cut(s) 41, 100, 246, 643, 658
BstSLI GKGCMC 2 cut(s) 274, 933
BstV1I GCAGC 3 cut(s) 529, 580, 1000
BstX2I RGATCY 2 cut(s) 117, 994
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 2 cut(s) 117, 994
BsuRI GGCC 3 cut(s) 153, 230, 468
BtsCI GGATG 9 cut(s) 32, 502, 673, 679, 745, 784, 836, 1075, 1108
BtsIMutI CAGTG 2 cut(s) 794, 1078
BveI ACCTGC 1 cut(s) 1064
Cac8I GCNNGC 4 cut(s) 591, 974, 1026, 1089
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 467, 676, 818
CseI GACGC 1 cut(s) 644
Csp6I GTAC 2 cut(s) 79, 708
CviAII CATG 7 cut(s) 338, 437, 580, 944, 1010, 1058, 1088
CviQI GTAC 2 cut(s) 79, 708
DdeI CTNAG 6 cut(s) 132, 138, 451, 521, 704, 1017
DpnI GATC 4 cut(s) 119, 258, 861, 996
DpnII GATC 4 cut(s) 117, 256, 859, 994
DraIII CACNNNGTG 2 cut(s) 218, 1084
EaeI YGGCCR 2 cut(s) 151, 228
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 3 cut(s) 231, 774, 934
Eco24I GRGCYC 4 cut(s) 90, 318, 988, 1110
Eco47I GGWCC 2 cut(s) 676, 818
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 311, 534
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 467
EcoRI GAATTC 2 cut(s) 109, 342
EcoRII CCWGG 3 cut(s) 246, 643, 658
EcoT14I CCWWGG 3 cut(s) 231, 774, 934
EcoT22I ATGCAT 1 cut(s) 1059
EcoT38I GRGCYC 4 cut(s) 90, 318, 988, 1110
ErhI CCWWGG 3 cut(s) 231, 774, 934
FaeI CATG 7 cut(s) 341, 440, 583, 947, 1013, 1061, 1091
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 7 cut(s) 337, 436, 579, 943, 1009, 1057, 1087
FauI CCCGC 1 cut(s) 729
Fnu4HI GCNGC 5 cut(s) 6, 39, 518, 594, 1014
FokI GGATG 9 cut(s) 39, 509, 666, 680, 752, 791, 823, 1082, 1115
FriOI GRGCYC 4 cut(s) 90, 318, 988, 1110
Fsp4HI GCNGC 5 cut(s) 6, 39, 518, 594, 1014
FspBI CTAG 6 cut(s) 347, 378, 509, 632, 813, 989
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 6, 39, 518, 594, 1014
GsuI CTGGAG 1 cut(s) 983
HaeIII GGCC 3 cut(s) 153, 230, 468
HapII CCGG 4 cut(s) 24, 42, 102, 1100
HgaI GACGC 1 cut(s) 644
HhaI GCGC 1 cut(s) 56
Hin1II CATG 7 cut(s) 341, 440, 583, 947, 1013, 1061, 1091
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 6 cut(s) 16, 136, 443, 768, 1006, 1117
HpaII CCGG 4 cut(s) 24, 42, 102, 1100
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 4 cut(s) 95, 199, 424, 949
Hpy188I TCNGA 6 cut(s) 68, 85, 117, 241, 620, 877
Hpy188III TCNNGA 6 cut(s) 494, 632, 955, 989, 1000, 1100
Hpy8I GTNNAC 4 cut(s) 95, 199, 424, 949
HpyAV CCTTC 1 cut(s) 853
HpyCH4III ACNGT 2 cut(s) 554, 789
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 9 cut(s) 212, 337, 596, 608, 976, 1057, 1073, 1087, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 6 cut(s) 132, 138, 451, 521, 704, 1017
HpySE526I ACGT 1 cut(s) 404
Hsp92II CATG 7 cut(s) 341, 440, 583, 947, 1013, 1061, 1091
HspAI GCGC 1 cut(s) 54
Kpn2I TCCGGA 1 cut(s) 1099
Kzo9I GATC 4 cut(s) 117, 256, 859, 994
LmnI GCTCC 4 cut(s) 93, 586, 969, 1021
Lsp1109I GCAGC 3 cut(s) 529, 580, 1000
LweI GCATC 2 cut(s) 17, 1060
MaeI CTAG 6 cut(s) 347, 378, 509, 632, 813, 989
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 4 cut(s) 32, 548, 796, 1076
MalI GATC 4 cut(s) 119, 258, 861, 996
MboI GATC 4 cut(s) 117, 256, 859, 994
MboII GAAGA 7 cut(s) 474, 797, 908, 935, 1004, 1116, 1119
MflI RGATCY 2 cut(s) 117, 994
MhlI GDGCHC 6 cut(s) 90, 274, 318, 933, 988, 1110
MlsI TGGCCA 2 cut(s) 153, 230
MluCI AATT 8 cut(s) 109, 342, 361, 395, 689, 870, 904, 915
MluNI TGGCCA 2 cut(s) 153, 230
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 425
Mox20I TGGCCA 2 cut(s) 153, 230
Mph1103I ATGCAT 1 cut(s) 1059
MroI TCCGGA 1 cut(s) 1099
MscI TGGCCA 2 cut(s) 153, 230
MseI TTAA 3 cut(s) 456, 503, 692
Msp20I TGGCCA 2 cut(s) 153, 230
MspI CCGG 4 cut(s) 24, 42, 102, 1100
MspR9I CCNGG 5 cut(s) 43, 102, 248, 645, 660
MvaI CCWGG 3 cut(s) 248, 645, 660
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 43, 102
NdeII GATC 4 cut(s) 117, 256, 859, 994
NlaIII CATG 7 cut(s) 341, 440, 583, 947, 1013, 1061, 1091
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 3 cut(s) 32, 548, 1076
NsiI ATGCAT 1 cut(s) 1059
NspI RCATGY 2 cut(s) 1061, 1091
NspV TTCGAA 1 cut(s) 14
PaeI GCATGC 1 cut(s) 1091
PaeR7I CTCGAG 1 cut(s) 534
PfeI GAWTC 5 cut(s) 16, 443, 768, 1006, 1117
PfoI TCCNGGA 1 cut(s) 643
PkrI GCNGC 5 cut(s) 7, 40, 519, 595, 1015
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PshBI ATTAAT 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 246, 643, 658
PspGI CCWGG 3 cut(s) 246, 643, 658
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 3 cut(s) 467, 676, 818
PspXI VCTCGAGB 1 cut(s) 534
PsuI RGATCY 2 cut(s) 117, 994
RsaI GTAC 2 cut(s) 80, 709
RsaNI GTAC 2 cut(s) 79, 708
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 3 cut(s) 456, 503, 692
SatI GCNGC 5 cut(s) 6, 39, 518, 594, 1014
Sau3AI GATC 4 cut(s) 117, 256, 859, 994
Sau96I GGNCC 3 cut(s) 467, 676, 818
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 5 cut(s) 43, 102, 248, 645, 660
SduI GDGCHC 6 cut(s) 90, 274, 318, 933, 988, 1110
SfaNI GCATC 2 cut(s) 17, 1060
Sfr274I CTCGAG 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 2 cut(s) 676, 818
SlaI CTCGAG 1 cut(s) 534
SmlI CTYRAG 3 cut(s) 534, 574, 1064
SmoI CTYRAG 3 cut(s) 534, 574, 1064
SpeI ACTAGT 1 cut(s) 508
SphI GCATGC 1 cut(s) 1091
Sse9I AATT 8 cut(s) 109, 342, 361, 395, 689, 870, 904, 915
SsiI CCGC 5 cut(s) 5, 30, 39, 430, 736
SspMI CTAG 6 cut(s) 347, 378, 509, 632, 813, 989
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 5 cut(s) 41, 100, 246, 643, 658
StyI CCWWGG 3 cut(s) 231, 774, 934
TaaI ACNGT 2 cut(s) 554, 789
TaiI ACGT 1 cut(s) 407
TaqI TCGA 3 cut(s) 14, 535, 858
TasI AATT 8 cut(s) 109, 342, 361, 395, 689, 870, 904, 915
TatI WGTACW 1 cut(s) 707
TauI GCSGC 2 cut(s) 8, 41
TfiI GAWTC 5 cut(s) 16, 443, 768, 1006, 1117
Tru1I TTAA 3 cut(s) 456, 503, 692
Tru9I TTAA 3 cut(s) 456, 503, 692
TscAI CASTG 2 cut(s) 794, 1085
TseFI GTSAC 3 cut(s) 32, 548, 1076
TseI GCWGC 3 cut(s) 517, 593, 1013
Tsp45I GTSAC 3 cut(s) 32, 548, 1076
TspDTI ATGAA 2 cut(s) 909, 998
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 794, 1085
VpaK11BI GGWCC 2 cut(s) 676, 818
VspI ATTAAT 1 cut(s) 692
XapI RAATTY 5 cut(s) 109, 342, 395, 870, 904
XbaI TCTAGA 2 cut(s) 631, 988
XceI RCATGY 2 cut(s) 1061, 1091
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XhoI CTCGAG 1 cut(s) 534
XspI CTAG 6 cut(s) 347, 378, 509, 632, 813, 989
ZrmI AGTACT 1 cut(s) 709
Zsp2I ATGCAT 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.