Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Reverse (-)

25221039 .. 25224859

Gene Structure 3821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATTATAAAAGGAGTGTTCAGGAGGTATGAAAGATGGAACCCAGTGCACCCAACCTCTGGAGCATTTTGGGGTTTGGGAATAGGCATTGGTTGTGGTGTTGGATGGGGTCCTGGTTTTGGGCCTGAAGTGATTGGCTATGTTGGAGCTGGCTGTGGTGTTGGCTTCAGTGTTGGTTTCACTCTGCTTGGTGTTGGTATTGGTCTTCCTGCAAATTGGCTCTACACTGTTCCTTATCAGGCTGTTATGGCAGCAAGAAGTAGTGCATTGAGGCTTGGTAGACCTCCTGGTCTTGTTTTCTCCCAAAGTATAGCGGGAGAGAGTTGGGATAAAATAGCACCGTGTGTCATAGGGCTGCAAAGAGAAGCCAGTGGAAGATTGTCTAGCTTCACACAACATCTTGTGGAAGGAGTCGAGTCAATTGATGTCAAGAGTCGGCTAAGTGACAATAGTAAGACCGTTTGTGATGGTTTAACAGCGTTTGGTGAACGCATCTTTCACTTTCCTAAAGGTTCCAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

174

Amino Acids

18.45

Weight (kDa)

9.02

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AasI	GACNNNNNNGTC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	280
AciI	CCGC	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	147, 151
AdeI	CACNNNGTG	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	59, 119
AjnI	CCWGG	2 cut(s)	112, 286
AluBI	AGCT	2 cut(s)	149, 387
AluI	AGCT	2 cut(s)	149, 387
Alw21I	GWGCWC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	122
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	251, 355
AspS9I	GGNCC	2 cut(s)	110, 122
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	263, 342
BccI	CCATC	3 cut(s)	30, 99, 461
BciT130I	CCWGG	2 cut(s)	114, 288
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	252, 356
BlsI	GCNGC	2 cut(s)	253, 357
Bme1390I	CCNGG	2 cut(s)	114, 288
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	110, 122
BmiI	GGNNCC	3 cut(s)	41, 111, 514
BmrFI	CCNGG	2 cut(s)	114, 288
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	501
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 119
Bse1I	ACTGG	2 cut(s)	44, 369
BseBI	CCWGG	2 cut(s)	114, 288
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	59, 119
BseNI	ACTGG	2 cut(s)	44, 369
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	263, 342
BshFI	GGCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	59, 119
BsnI	GGCC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	41, 111, 514
BsrI	ACTGG	2 cut(s)	44, 369
Bst2UI	CCWGG	2 cut(s)	114, 288
Bst4CI	ACNGT	3 cut(s)	229, 342, 460
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	114, 288
BstSCI	CCNGG	2 cut(s)	112, 286
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	263, 342
BstV2I	GAAGAC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	4 cut(s)	51, 175, 225, 376
Cac8I	GCNNGC	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	110, 122
DdeI	CTNAG	1 cut(s)	440
DraIII	CACNNNGTG	1 cut(s)	344
DrdI	GACNNNNNNGTC	1 cut(s)	288
DseDI	GACNNNNNNGTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	147, 151
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	112, 286
FaiI	YATR	6 cut(s)	8, 30, 141, 248, 311, 350
FauI	CCCGC	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	252, 356
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	252, 356
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	252, 356
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	411, 416, 433
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	3 cut(s)	49, 281, 488
Hpy188III	TCNNGA	3 cut(s)	22, 60, 430
Hpy8I	GTNNAC	3 cut(s)	49, 281, 488
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	229, 342, 460
HpyCH4V	TGCA	4 cut(s)	49, 212, 266, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	440
LmnI	GCTCC	2 cut(s)	62, 146
Lsp1109I	GCAGC	2 cut(s)	263, 342
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	443
MboII	GAAGA	2 cut(s)	197, 387
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	214, 420
MlyI	GAGTC	3 cut(s)	420, 425, 442
MmeI	TCCRAC	2 cut(s)	82, 124
MnlI	CCTC	4 cut(s)	18, 67, 264, 294
MseI	TTAA	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	114, 288
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	2 cut(s)	114, 288
MwoI	GCNNNNNNNGC	1 cut(s)	248
NlaIV	GGNNCC	3 cut(s)	41, 111, 514
NmuCI	GTSAC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	253, 357
PleI	GAGTC	3 cut(s)	419, 424, 441
PpsI	GAGTC	3 cut(s)	419, 424, 441
PpuMI	RGGWCCY	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	112, 286
PspGI	CCWGG	2 cut(s)	112, 286
PspN4I	GGNNCC	3 cut(s)	41, 111, 514
PspPI	GGNCC	2 cut(s)	110, 122
PspPPI	RGGWCCY	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	2 cut(s)	252, 356
Sau96I	GGNCC	2 cut(s)	110, 122
SchI	GAGTC	3 cut(s)	420, 425, 442
ScrFI	CCNGG	2 cut(s)	114, 288
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	29, 59, 151, 286, 389, 514
SfaNI	GCATC	1 cut(s)	501
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	2 cut(s)	214, 420
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	112, 286
TaaI	ACNGT	3 cut(s)	229, 342, 460
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	214, 420
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	4 cut(s)	51, 175, 232, 376
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	2 cut(s)	251, 355
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	4 cut(s)	51, 175, 232, 376
Van91I	CCANNNNNTGG	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.