Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Forward (+)

48008515 .. 48011545

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G030330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGCGGTCATTACAGGTTTCCAAGACACGGCTCTTCTCCTCACTGCCAGCTATTACTCCCCTCTCTGATGTAGAAACCCAATTGAGAGCTTTTTGGAAGGACCCGGATCCTAAAATTTCAGAGGCGCTTTCGCTTTTTCATCATGCCATACATTCCAACCGCCTGCCTCCGGGGTCAGCCTCAGCCTGCAACTTCCTTGTAGACACTCTCGCAAGGTCAAAAAATTATGAACTATCATTCTCAGTTTATACCAAGATGACCAAGGTTGGTATTATTCCAAGCTTTATATCATTGAGTTGTTTAGTTTCATATTTTGTCAATACGCGTAAGCTAGAATTCGCACCCGGGGTTTTCGGCTTGGTATTAAAGCGTGGATTTCAGTTAAATGAGTATGTTATGAATCTTGCATTAAACGGTTTTTGTTCTAATGATGAGGTTGACAAGGCAATTGAGTTGTTTAGTGTAATGAGAAGACATTTTGTAAAGCCTGGTATTCGTAGTTATAACATTCTTATAAATGGACTTTGCAAAGCGAAAAAGTTGAAAGAAGCAGTGGAATTGTTGGTTGATATGGAGGTGTCGGATTCTGAACCGAATGTGGTAACATACAGCACACTGATTAATGGATTTTGTAAACAGGGTAGAGTGGATGAGGCCATGGGTTTCTTGGAGGAGATGAGGCAAAAGGGTTTGGAAATGGATGTTTTTGTATATGGGGCCCTTATAAGTGGTTTTTGTGCTAAAGGGAGTTTTGATAGAGGAAAACAACTTTTTGATGAGATGTTAAACAAGGGTATTTCTCCTAATGTGGTTACGTATAGTTGTTTGATTAATTATCTTTCAAAGACAGGTAAGTGGAAAGAAGTCACTGTGATGGTAAATGATATGACACAATGTGGAGTTCCCCCTGATGCTATTACTTACACAGGTATCCTTGATGGGCTTTTCAAAAATGGAATGGCTACAAAAGCCATGGCGATATTCAATTTAATGCTATTGAAGGGTACAGAGCCTAATAATGTAACATTCAACGTTATGATTGATGGATTATGCAAGGAGGGGTTGGTGGATGATGCTTTAAAGATCTTAGAAATGATGAAAGGGAAAGGTGTAAAGCCTGATGTAATCACGTACAACACATTACTAATGGGACTATCTTGTGATGGGAAGGTTGATGAGATGATGCAACTTTTCAGTAAGATAACAAATGATGAGAACTTTGTTGAGCCAGATGTTATGACATATAACATGCTCATTTTGGGCCTGTGCAAGGAAGGTAATCTTGATCAGGCTACGGAGATGTATCATACAATGATTGAAAGGGGCATTTCTGGTAGCTTATGTACTTATAACACTTTGATCGGCAGATGCATACAGGAAGGATTAGTTGACAAGGCCATAGAATTCTGGAGACATGCAGTTGACTTGGGAGTTATACCTAACTCAATCACTTATGGTGTCTTGATCAATGGATTTTGCAAAAATCAAATGGTCAGGCTTGCAAAAGGACTTTTTAGTAAAATGAGAGCTTCTGGGATTAGTCCTACTGTAATTGAGTACAACACTTTGATGTCATCGTTGTGCAAGGAGGGTAGTTTGGAGCAAGCTAGGATATTGTTTCAAGAAATGAGAACTGCAAATCATTCACCTTGTGTTGTCTCATTTAATACCATAATTGATGGACTTCTTAAAGCTGGAGATATTAAATCTACTAAAGAGTTGCTAGAGGATATGTTCAAATTGGGTTTAATTCCCGATAGAATTACTTTCTCTACATTAGTAAACCGGTTTTCAAAACTTGGGCTATTGGCTGAGGCTAGAATGTGCGTTGAGAAGATGATTGCTCGTGGTATTGAACCTGATGTCTTTGTATTCGATTCTTTATTAAAGGGCTACAGTTCTAAAGGTGAAACAGAAGAAATTGTTAATTTGCTTCATCAGATGGCAGAAAAGGGTGTTGTTCTTGACAAAGATATAACTTCTACCATCTTGGCGTGCCTCTGTCAAATCTCTGATGACGTTGATGTGATGGAGGTTCTCCCTACTTTTTCCAAAGAGACATCGAAAGGAATAAGCATTACCTGCAATGAGCTATTGATGAAAGTCAATAAATTTTATCCGGAGCTTAAGTTATGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

714

Amino Acids

79.39

Weight (kDa)

6.05

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	112 - 221	5.8e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	129 - 177	6.1e-12	PPR repeat family
PPR_1	PF12854	161 - 192	5.2e-10	PPR repeat
PPR_2	PF13041	163 - 212	4.4e-17	PPR repeat family
PPR	PF01535	167 - 193	1.3e-06	PPR repeat
PPR_1	PF12854	197 - 227	2.6e-16	PPR repeat
PPR_2	PF13041	198 - 246	5.2e-17	PPR repeat family
PPR	PF01535	201 - 231	2.7e-10	PPR repeat
PPR_3	PF13812	223 - 280	9.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	229 - 261	3.4e-08	PPR repeat
PPR_2	PF13041	234 - 281	4.4e-14	PPR repeat family
PPR	PF01535	237 - 266	7.8e-06	PPR repeat
PPR_long	PF17177	250 - 326	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	268 - 317	4.2e-14	PPR repeat family
PPR_3	PF13812	292 - 348	3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	300 - 331	7.5e-06	PPR repeat
PPR_2	PF13041	306 - 352	1.3e-13	PPR repeat family
TPR_24	PF23276	318 - 437	3.4e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	334 - 367	1.5e-12	PPR repeat
PPR_2	PF13041	341 - 385	7.6e-16	PPR repeat family
PPR	PF01535	341 - 371	1.4e-09	PPR repeat
PPR_1	PF12854	369 - 400	2.6e-08	PPR repeat
PPR_1	PF12854	408 - 438	1.7e-10	PPR repeat
PPR_3	PF13812	408 - 457	1.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	410 - 454	1.3e-12	PPR repeat family
PPR	PF01535	414 - 443	1.9e-06	PPR repeat
PPR_long	PF17177	427 - 551	1.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	448 - 494	2.8e-12	PPR repeat family
PPR_3	PF13812	472 - 526	2.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	477 - 509	3e-08	PPR repeat
PPR_2	PF13041	480 - 517	4.9e-08	PPR repeat family
PPR	PF01535	483 - 513	3.8e-06	PPR repeat
PPR_1	PF12854	512 - 544	2.6e-08	PPR repeat
PPR_2	PF13041	515 - 550	2.1e-06	PPR repeat family
PPR_2	PF13041	550 - 599	4.6e-12	PPR repeat family
PPR_2	PF13041	620 - 668	7.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	504, 515, 725, 1350
Acc36I	ACCTGC	1 cut(s)	2090
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	2119
AciI	CCGC	2 cut(s)	4, 160
AclI	AACGTT	1 cut(s)	1032
AclWI	GGATC	2 cut(s)	101, 114
AcsI	RAATTY	4 cut(s)	114, 335, 1403, 2111
AdeI	CACNNNGTG	2 cut(s)	896, 1652
AfaI	GTAC	4 cut(s)	1006, 1133, 1345, 1559
AfiI	CCNNNNNNNGG	3 cut(s)	27, 169, 1270
AflII	CTTAAG	1 cut(s)	2126
AflIII	ACRYGT	1 cut(s)	323
AgeI	ACCGGT	1 cut(s)	1785
AjnI	CCWGG	1 cut(s)	487
Alw26I	GTCTC	3 cut(s)	1405, 1663, 2051
AlwI	GGATC	2 cut(s)	101, 114
Ama87I	CYCGRG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	2119
AoxI	GGCC	4 cut(s)	654, 717, 1261, 1395
ApaI	GGGCCC	1 cut(s)	721
ApeKI	GCWGC	1 cut(s)	2138
ApoI	RAATTY	4 cut(s)	114, 335, 1403, 2111
AseI	ATTAAT	2 cut(s)	621, 831
AsiGI	ACCGGT	1 cut(s)	1785
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	4 cut(s)	100, 717, 718, 1261
AsuC2I	CCSGG	4 cut(s)	104, 171, 345, 346
AsuHPI	GGTGA	2 cut(s)	1638, 1919
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	721
BaeI	ACNNNNGTAYC	2 cut(s)	913, 946
BamHI	GGATCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	721
BauI	CACGAG	1 cut(s)	1845
BbsI	GAAGAC	1 cut(s)	478
BbvCI	CCTCAGC	2 cut(s)	181, 1812
BbvI	GCAGC	1 cut(s)	2125
BccI	CCATC	8 cut(s)	868, 932, 1037, 1157, 1673, 1936, 1994, 2023
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	941
BclI	TGATCA	2 cut(s)	1285, 1464
BcnI	CCSGG	4 cut(s)	104, 171, 345, 346
BcoDI	GTCTC	3 cut(s)	1405, 1663, 2051
BfaI	CTAG	4 cut(s)	332, 1608, 1724, 1818
BfmI	CTRYAG	1 cut(s)	1894
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	2126
BfuAI	ACCTGC	1 cut(s)	2090
BfuI	GTATCC	1 cut(s)	941
BglII	AGATCT	1 cut(s)	1083
BisI	GCNGC	1 cut(s)	2139
BlsI	GCNGC	1 cut(s)	2140
Bme1390I	CCNGG	5 cut(s)	104, 171, 345, 346, 489
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	4 cut(s)	100, 717, 718, 1261
BmiI	GGNNCC	4 cut(s)	102, 108, 718, 719
BmrFI	CCNGG	5 cut(s)	104, 171, 345, 346, 489
BmsI	GCATC	4 cut(s)	901, 1063, 1173, 1358
BpiI	GAAGAC	1 cut(s)	478
BpmI	CTGGAG	2 cut(s)	1429, 1716
Bpu10I	CCTNAGC	2 cut(s)	181, 1812
BpuMI	CCSGG	4 cut(s)	104, 171, 345, 346
BsaAI	YACGTR	2 cut(s)	816, 1131
BsaJI	CCNNGG	6 cut(s)	170, 261, 344, 345, 657, 972
BsaWI	WCCGGW	2 cut(s)	1785, 2119
BsaXI	ACNNNNNCTCC	2 cut(s)	2114, 2144
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 169, 1270
Bse118I	RCCGGY	1 cut(s)	1785
Bse3DI	GCAATG	1 cut(s)	2092
BseAI	TCCGGA	1 cut(s)	2119
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	6 cut(s)	170, 261, 344, 345, 657, 972
BseGI	GGATG	3 cut(s)	655, 706, 1075
BseLI	CCNNNNNNNGG	3 cut(s)	27, 169, 1270
BseMI	GCAATG	1 cut(s)	2092
BseMII	CTCAG	3 cut(s)	195, 255, 1803
BseRI	GAGGAG	2 cut(s)	28, 686
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	1 cut(s)	2125
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	4 cut(s)	656, 719, 1263, 1397
BshTI	ACCGGT	1 cut(s)	1785
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
BslFI	GGGAC	1 cut(s)	1164
BslI	CCNNNNNNNGG	3 cut(s)	27, 169, 1270
BsmAI	GTCTC	3 cut(s)	1405, 1663, 2051
BsmFI	GGGAC	1 cut(s)	1164
BsnI	GGCC	4 cut(s)	656, 719, 1263, 1397
BsoBI	CYCGRG	1 cut(s)	344
Bsp120I	GGGCCC	1 cut(s)	717
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp13I	TCCGGA	1 cut(s)	2119
Bsp143I	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
Bsp19I	CCATGG	2 cut(s)	657, 972
BspACI	CCGC	2 cut(s)	4, 160
BspANI	GGCC	4 cut(s)	656, 719, 1263, 1397
BspCNI	CTCAG	3 cut(s)	194, 254, 1804
BspEI	TCCGGA	1 cut(s)	2119
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	102, 108, 718, 719
BspMI	ACCTGC	1 cut(s)	2090
BspPI	GGATC	2 cut(s)	101, 114
BspQI	GCTCTTC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	2126
BsrDI	GCAATG	1 cut(s)	2092
BsrFI	RCCGGY	1 cut(s)	1785
BssAI	RCCGGY	1 cut(s)	1785
BssECI	CCNNGG	6 cut(s)	170, 261, 344, 345, 657, 972
BssMI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
BssSI	CACGAG	1 cut(s)	1845
BssT1I	CCWWGG	3 cut(s)	261, 657, 972
Bst2BI	CACGAG	1 cut(s)	1845
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	4 cut(s)	416, 871, 1549, 1898
Bst6I	CTCTTC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	2126
BstAPI	GCANNNNNTGC	1 cut(s)	2082
BstBAI	YACGTR	2 cut(s)	816, 1131
BstC8I	GCNNGC	6 cut(s)	48, 164, 187, 1500, 1605, 1996
BstDEI	CTNAG	4 cut(s)	181, 241, 1087, 1812
BstDSI	CCRYGG	2 cut(s)	657, 972
BstENI	CCTNNNNNAGG	1 cut(s)	1268
BstF5I	GGATG	3 cut(s)	655, 706, 1075
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	5 cut(s)	109, 1086, 1288, 1362, 1467
BstMAI	GTCTC	3 cut(s)	1405, 1663, 2051
BstMBI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
BstMWI	GCNNNNNNNGC	2 cut(s)	968, 2082
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	2 cut(s)	1252, 1418
BstSCI	CCNGG	5 cut(s)	102, 169, 343, 344, 487
BstSFI	CTRYAG	1 cut(s)	1894
BstSLI	GKGCMC	1 cut(s)	721
BstSNI	TACGTA	1 cut(s)	816
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	2125
BstV2I	GAAGAC	1 cut(s)	478
BstX2I	RGATCY	2 cut(s)	106, 1083
BstYI	RGATCY	2 cut(s)	106, 1083
BsuI	GTATCC	1 cut(s)	941
BsuRI	GGCC	4 cut(s)	656, 719, 1263, 1397
BtgI	CCRYGG	2 cut(s)	657, 972
BtsCI	GGATG	3 cut(s)	655, 706, 1075
BtsI	GCAGTG	2 cut(s)	41, 558
BtsIMutI	CAGTG	4 cut(s)	41, 558, 614, 867
BveI	ACCTGC	1 cut(s)	2090
Cac8I	GCNNGC	6 cut(s)	48, 164, 187, 1500, 1605, 1996
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	1785
Cfr13I	GGNCC	4 cut(s)	100, 717, 718, 1261
Cfr9I	CCCGGG	1 cut(s)	344
Csp6I	GTAC	4 cut(s)	1005, 1132, 1344, 1558
CspAI	ACCGGT	1 cut(s)	1785
CviAII	CATG	5 cut(s)	143, 658, 973, 1249, 1415
CviQI	GTAC	4 cut(s)	1005, 1132, 1344, 1558
DdeI	CTNAG	4 cut(s)	181, 241, 1087, 1812
DpnI	GATC	5 cut(s)	108, 1085, 1287, 1361, 1466
DpnII	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
DraI	TTTAAA	1 cut(s)	1080
DraIII	CACNNNGTG	2 cut(s)	896, 1652
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco105I	TACGTA	1 cut(s)	816
Eco130I	CCWWGG	3 cut(s)	261, 657, 972
Eco24I	GRGCYC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	1268
EcoO109I	RGGNCCY	3 cut(s)	100, 717, 718
EcoRI	GAATTC	2 cut(s)	335, 1403
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	3 cut(s)	261, 657, 972
EcoT22I	ATGCAT	1 cut(s)	1373
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	3 cut(s)	261, 657, 972
FaeI	CATG	5 cut(s)	146, 661, 976, 1252, 1418
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	1 cut(s)	1164
FatI	CATG	5 cut(s)	142, 657, 972, 1248, 1414
FbaI	TGATCA	2 cut(s)	1285, 1464
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	2139
FokI	GGATG	3 cut(s)	662, 713, 1082
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	1 cut(s)	2139
FspBI	CTAG	4 cut(s)	332, 1608, 1724, 1818
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	2139
GsuI	CTGGAG	2 cut(s)	1429, 1716
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	656, 719, 1263, 1397
HapII	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	5 cut(s)	146, 661, 976, 1252, 1418
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	3 cut(s)	439, 1390, 1423
HindII	GTYRAC	3 cut(s)	439, 1390, 1423
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	3 cut(s)	400, 584, 1877
HpaII	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
HphI	GGTGA	2 cut(s)	1638, 1919
Hpy166II	GTNNAC	6 cut(s)	202, 439, 635, 1390, 1423, 1783
Hpy188I	TCNGA	6 cut(s)	67, 121, 583, 589, 1941, 2014
Hpy188III	TCNNGA	7 cut(s)	1283, 1408, 1462, 1622, 1754, 1964, 2120
Hpy8I	GTNNAC	6 cut(s)	202, 439, 635, 1390, 1423, 1783
HpyAV	CCTTC	5 cut(s)	91, 994, 1162, 1268, 1373
HpyCH4III	ACNGT	4 cut(s)	416, 871, 1549, 1898
HpyCH4IV	ACGT	4 cut(s)	815, 1032, 1130, 2019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	968, 2082
HpyF3I	CTNAG	4 cut(s)	181, 241, 1087, 1812
HpySE526I	ACGT	4 cut(s)	815, 1032, 1130, 2019
Hsp92II	CATG	5 cut(s)	146, 661, 976, 1252, 1418
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	2119
Ksp22I	TGATCA	2 cut(s)	1285, 1464
Kzo9I	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	1600, 2122
Lsp1109I	GCAGC	1 cut(s)	2125
LweI	GCATC	4 cut(s)	901, 1063, 1173, 1358
MaeI	CTAG	4 cut(s)	332, 1608, 1724, 1818
MaeII	ACGT	4 cut(s)	815, 1032, 1130, 2019
MaeIII	GTNAC	4 cut(s)	601, 811, 865, 1021
MalI	GATC	5 cut(s)	108, 1085, 1287, 1361, 1466
MboI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
MboII	GAAGA	4 cut(s)	25, 483, 1846, 1928
MfeI	CAATTG	2 cut(s)	80, 447
MflI	RGATCY	2 cut(s)	106, 1083
MhlI	GDGCHC	1 cut(s)	721
MluI	ACGCGT	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	180, 561
Mph1103I	ATGCAT	1 cut(s)	1373
MroI	TCCGGA	1 cut(s)	2119
MslI	CAYNNNNRTG	3 cut(s)	872, 1568, 1579
MspCI	CTTAAG	1 cut(s)	2126
MspI	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
MspR9I	CCNGG	5 cut(s)	104, 171, 345, 346, 489
MunI	CAATTG	2 cut(s)	80, 447
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	968, 2082
NciI	CCSGG	4 cut(s)	104, 171, 345, 346
NcoI	CCATGG	2 cut(s)	657, 972
NdeII	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
NlaIII	CATG	5 cut(s)	146, 661, 976, 1252, 1418
NlaIV	GGNNCC	4 cut(s)	102, 108, 718, 719
NmuCI	GTSAC	1 cut(s)	865
NsiI	ATGCAT	1 cut(s)	1373
NspI	RCATGY	2 cut(s)	1252, 1418
PciSI	GCTCTTC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	400, 584, 1877
PinAI	ACCGGT	1 cut(s)	1785
PkrI	GCNGC	1 cut(s)	2140
Ppu21I	YACGTR	2 cut(s)	816, 1131
PpuMI	RGGWCCY	1 cut(s)	100
PshBI	ATTAAT	2 cut(s)	621, 831
PsiI	TTATAA	4 cut(s)	504, 515, 725, 1350
Psp1406I	AACGTT	1 cut(s)	1032
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	4 cut(s)	102, 108, 718, 719
PspOMI	GGGCCC	1 cut(s)	717
PspPI	GGNCC	4 cut(s)	100, 717, 718, 1261
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	106, 1083
RsaI	GTAC	4 cut(s)	1006, 1133, 1345, 1559
RsaNI	GTAC	4 cut(s)	1005, 1132, 1344, 1558
RseI	CAYNNNNRTG	3 cut(s)	872, 1568, 1579
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	2139
Sau3AI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
Sau96I	GGNCC	4 cut(s)	100, 717, 718, 1261
ScrFI	CCNGG	5 cut(s)	104, 171, 345, 346, 489
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	4 cut(s)	901, 1063, 1173, 1358
SfcI	CTRYAG	1 cut(s)	1894
SinI	GGWCC	1 cut(s)	100
SmaI	CCCGGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	3 cut(s)	872, 1568, 1579
SmlI	CTYRAG	1 cut(s)	2126
SmoI	CTYRAG	1 cut(s)	2126
SnaBI	TACGTA	1 cut(s)	816
SsiI	CCGC	2 cut(s)	4, 160
SspMI	CTAG	4 cut(s)	332, 1608, 1724, 1818
StyD4I	CCNGG	5 cut(s)	102, 169, 343, 344, 487
StyI	CCWWGG	3 cut(s)	261, 657, 972
TaaI	ACNGT	4 cut(s)	416, 871, 1549, 1898
TaiI	ACGT	4 cut(s)	818, 1035, 1133, 2022
TaqI	TCGA	2 cut(s)	1875, 2063
TatI	WGTACW	2 cut(s)	1343, 1557
TfiI	GAWTC	3 cut(s)	400, 584, 1877
TscAI	CASTG	4 cut(s)	48, 558, 621, 874
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	1 cut(s)	2138
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	7 cut(s)	128, 243, 297, 413, 1112, 1925, 2114
TspGWI	ACGGA	1 cut(s)	1310
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	4 cut(s)	48, 558, 621, 874
Vha464I	CTTAAG	1 cut(s)	2126
VpaK11BI	GGWCC	1 cut(s)	100
VspI	ATTAAT	2 cut(s)	621, 831
XagI	CCTNNNNNAGG	1 cut(s)	1268
XapI	RAATTY	4 cut(s)	114, 335, 1403, 2111
XceI	RCATGY	2 cut(s)	1252, 1418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmaI	CCCGGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	4 cut(s)	332, 1608, 1724, 1818
Zsp2I	ATGCAT	1 cut(s)	1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.