Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Forward (+)

45095709 .. 45099320

Gene Structure 3612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGACCAAGGTTGGTATTATTCCAAGCTTTATATCATTGAGTTGTTTAGTTTCATATTTTGTCAATACGCGTAAGCTAGAATTCGCACCCGGGGTTTTCAGCTTGGTATTAAAGCGTGGATTTCAGTTAAATGAGTATGTTATGAATCTTGCATTAAACGGTTTTTGTTCTAATGATGAGGTTGACAAGGCAATTGAGTTGTTTAGTGTAATGAGAAGACATTTTGTAAAGCCTGGTATTCGTAGTTATAACATTCTTATAAATGGACTTTGCAAAGCGAAAAGGTTGAAAGAAGCAGTGGAATTGTTGGTTGATATGGAGGTGTCAGATTCTGAACCGAATGTGGTAACATACAGCACATTGATTAATGGATTTTGTAAACAGGGTAGAGTGGAAGAGGCCATGGGTTTCTTGGAGGAGATGAGGCAAAAGGGTTTGGAAATGGATGTTTTTGTATATGGGGCCCTTATAAGTGGTTTTTGTGCTAAAGGGAGTTTTGATAGAGGAAAACAACTTTTTGATGAGATGTTAAACAAGGGTATTTCTCCTAATGTGGTTACGTATAGTTGTTTGATTAATTATCTTTCAAAGACTGGGAAGTGGAAAGAAGTCACTGTGATGGTAAATGATATGACACAATGTGGAGTTCCCCCTGATGCTGTTACTTACACAGGTATCCTTGATGGGCTTTTCAAAAATGGAATGGCTACAAAAGCCATGGCGATATTCAATTTAATGCTATTGAAGGGTACAGAGCCTAATAATGTAACATACAACGTTATGATTGATGGACTATGCAAGAAGGGGTTGGTGGATGATGCTTTAAAGATCTTAGAAATGATGAAAGGGAAAGGTGTAAAGCCTGATGTAATCACTTACAACACATTACTAATGGGACTATCCTGTGATGGGAAGGTTGATGAGATGATGAAACTTTTCAGTAAGATAACAAATGATGAGAACTTTGTTGAGCCAGATGTTATGACATATAACATGCTTATTTTGGGACTATGCAAGGAAGGTAATCTTGATCAGGCTATGGAGATGTATCATACAATGGTTGAAAGGGGCATTTCTGGTAGCTTATGTACTTATAACACTTTGATCGACAGATGCATACAGGAAGGATTAGTTGACAAGGCCATAGAATTCTGGAGACATGCAGTTGACTTGGGAGTAATACCTAACTCAATCACTTATGGTGTCTTGATCAATGGATTTTGCAAAAATCAAATGGTCAGGCTTGCAAAAGGACTTTTTAGTAAAATGAGAGCTTCTGGGATTAGTCCTACTGTAATTGACTACAACACTTTGATGTCATCATTGTGCAAGGAGGGTAGTTTGGAGCAAGCTAGGATGTTGTTTCAAGAAATGAGAACTGCAAATCATTTGCCTTGTGTTGTCTCATTTAATACCATAATTGACGGACTTCTTAAAGCTGGAGATATTAAATCTGCTAAAGAGTTGCTAGAGGATATGTTCAAATTGGGTTTAATTCCAGATAGAATTACTTTCTCTACATTGGTAAACCGGTTTTCAAAACTTGGGCTATTGGCTGAGGCTAGAATGTGCGTCGAGAAGATGATTGCTCGTGGTATTGAGCCTGATGTCTTTGTTTTTGATTCTTTATTAAAGGGCTATAGTTCTAAAGGTGAAACAGAAGAAATTGTTAATTTGCTTCATCAGATGGCAGAAAAGGGTGTTGTTCTTGACAAAGATATAACTTCTACCATCTTGGCGAGCCTCTGTCAAATCTCTGATGACGTTGATGTGATGGAGTGCCACAAAAGTGTGTTGCTCTCTGTGCTATGCTATGTTGCTGTGCTGACTGTGTTTGCCTTTTTATATGGACGTTTATATGTGGTTATGAGTGGATTGGAAATGAAGATTCTGGAGAACTCCTCCATACATAACACTAAGGTTTTTGGAGAGGCTTTGGCTATGGAGTTTGCTTTTCAACTGGGCTTGTTACCAATGCTTCCCATTGTGACGGAAATTGGTCTGGAAAAGGGGTTTTTAACAATGCCTTGGGTGGTTTCTTATTCATGCAGCTCCAGCTGGCCTCTGTTTTCTTCACATTTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

696

Amino Acids

77.4

Weight (kDa)

5.73

Isoelectric Point (pI)

22.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	27 - 136	2.3e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	44 - 92	5.9e-12	PPR repeat family
PPR_1	PF12854	76 - 107	2.6e-10	PPR repeat
PPR_2	PF13041	78 - 127	5.5e-17	PPR repeat family
PPR	PF01535	82 - 108	1.4e-06	PPR repeat
PPR_1	PF12854	112 - 142	1.1e-15	PPR repeat
PPR_2	PF13041	113 - 161	3.9e-17	PPR repeat family
PPR	PF01535	116 - 146	2.2e-10	PPR repeat
PPR_3	PF13812	138 - 195	9.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	144 - 176	3.3e-08	PPR repeat
PPR_2	PF13041	149 - 193	1.1e-13	PPR repeat family
PPR	PF01535	152 - 181	7.5e-06	PPR repeat
PPR_long	PF17177	165 - 243	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	183 - 232	2.2e-14	PPR repeat family
PPR_3	PF13812	207 - 263	1.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	215 - 246	3.2e-06	PPR repeat
PPR_2	PF13041	221 - 267	1.1e-14	PPR repeat family
TPR_24	PF23276	233 - 352	3.4e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	249 - 282	4.2e-13	PPR repeat
PPR_2	PF13041	256 - 300	9.6e-17	PPR repeat family
PPR	PF01535	256 - 286	3.2e-10	PPR repeat
PPR_1	PF12854	284 - 315	1.9e-08	PPR repeat
PPR_1	PF12854	323 - 354	4.1e-11	PPR repeat
PPR_3	PF13812	323 - 372	7.7e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	325 - 372	2.1e-14	PPR repeat family
PPR	PF01535	329 - 358	4.1e-07	PPR repeat
PPR_long	PF17177	339 - 459	4.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	363 - 409	1.1e-12	PPR repeat family
PPR_3	PF13812	387 - 441	2.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	392 - 424	2.9e-08	PPR repeat
PPR	PF01535	398 - 428	3.7e-06	PPR repeat
PPR_1	PF12854	427 - 459	1.1e-09	PPR repeat
PPR_2	PF13041	430 - 465	1.5e-06	PPR repeat family
PPR	PF01535	435 - 461	2.3e-06	PPR repeat
PPR_1	PF12854	465 - 493	5.3e-06	PPR repeat
PPR_2	PF13041	465 - 514	2e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	249, 260, 470, 1095
AccII	CGCG	1 cut(s)	70
AclI	AACGTT	1 cut(s)	777
AcsI	RAATTY	2 cut(s)	80, 1148
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	2 cut(s)	751, 1090
AfiI	CCNNNNNNNGG	1 cut(s)	909
AflIII	ACRYGT	1 cut(s)	68
AgeI	ACCGGT	1 cut(s)	1530
AjnI	CCWGG	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	1788
AluBI	AGCT	9 cut(s)	27, 76, 102, 1083, 1274, 1352, 1439, 2052, 2058
AluI	AGCT	9 cut(s)	27, 76, 102, 1083, 1274, 1352, 1439, 2052, 2058
Alw26I	GTCTC	2 cut(s)	1150, 1408
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	4 cut(s)	399, 462, 1140, 2060
ApaI	GGGCCC	1 cut(s)	466
ApeKI	GCWGC	1 cut(s)	2049
ApoI	RAATTY	2 cut(s)	80, 1148
AseI	ATTAAT	2 cut(s)	366, 576
AsiGI	ACCGGT	1 cut(s)	1530
Asp700I	GAANNNNTTC	1 cut(s)	935
AspS9I	GGNCC	2 cut(s)	462, 463
AsuC2I	CCSGG	2 cut(s)	90, 91
AsuHPI	GGTGA	1 cut(s)	1664
AvaI	CYCGRG	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	466
BaeI	ACNNNNGTAYC	2 cut(s)	658, 691
BanII	GRGCYC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	1590
BbsI	GAAGAC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	1557
BbvI	GCAGC	1 cut(s)	2061
BccI	CCATC	7 cut(s)	613, 677, 782, 902, 1681, 1739, 1768
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	686
BclI	TGATCA	2 cut(s)	1030, 1209
BcnI	CCSGG	2 cut(s)	90, 91
BcoDI	GTCTC	2 cut(s)	1150, 1408
BfaI	CTAG	4 cut(s)	77, 1353, 1469, 1563
BfmI	CTRYAG	1 cut(s)	1639
BfuI	GTATCC	1 cut(s)	686
BglII	AGATCT	1 cut(s)	828
BisI	GCNGC	1 cut(s)	2050
BlsI	GCNGC	1 cut(s)	2051
Bme1390I	CCNGG	3 cut(s)	90, 91, 234
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	462, 463
BmiI	GGNNCC	2 cut(s)	463, 464
BmrFI	CCNGG	3 cut(s)	90, 91, 234
BmrI	ACTGGG	2 cut(s)	603, 1970
BmsI	GCATC	3 cut(s)	646, 808, 1103
BmuI	ACTGGG	2 cut(s)	603, 1970
BpiI	GAAGAC	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	1886, 1918
BpmI	CTGGAG	4 cut(s)	1174, 1461, 1913, 2038
Bpu10I	CCTNAGC	1 cut(s)	1557
BpuMI	CCSGG	2 cut(s)	90, 91
BsaAI	YACGTR	1 cut(s)	561
BsaJI	CCNNGG	6 cut(s)	6, 89, 90, 402, 717, 2027
BsaWI	WCCGGW	1 cut(s)	1530
Bsc4I	CCNNNNNNNGG	1 cut(s)	909
Bse118I	RCCGGY	1 cut(s)	1530
Bse1I	ACTGG	2 cut(s)	598, 1965
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	6 cut(s)	6, 89, 90, 402, 717, 2027
BseGI	GGATG	3 cut(s)	451, 820, 1362
BseLI	CCNNNNNNNGG	1 cut(s)	909
BseMII	CTCAG	1 cut(s)	1548
BseNI	ACTGG	2 cut(s)	598, 1965
BseRI	GAGGAG	2 cut(s)	431, 1891
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	2061
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	4 cut(s)	401, 464, 1142, 2062
BshTI	ACCGGT	1 cut(s)	1530
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	90, 1531
BslFI	GGGAC	2 cut(s)	909, 1020
BslI	CCNNNNNNNGG	1 cut(s)	909
BsmAI	GTCTC	2 cut(s)	1150, 1408
BsmFI	GGGAC	2 cut(s)	909, 1020
BsnI	GGCC	4 cut(s)	401, 464, 1142, 2062
BsoBI	CYCGRG	1 cut(s)	89
Bsp120I	GGGCCC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	828, 1030, 1104, 1209
Bsp19I	CCATGG	2 cut(s)	402, 717
BspANI	GGCC	4 cut(s)	401, 464, 1142, 2062
BspCNI	CTCAG	1 cut(s)	1549
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	463, 464
BsrFI	RCCGGY	1 cut(s)	1530
BsrI	ACTGG	2 cut(s)	598, 1965
BssAI	RCCGGY	1 cut(s)	1530
BssECI	CCNNGG	6 cut(s)	6, 89, 90, 402, 717, 2027
BssMI	GATC	4 cut(s)	828, 1030, 1104, 1209
BssSI	CACGAG	1 cut(s)	1590
BssT1I	CCWWGG	4 cut(s)	6, 402, 717, 2027
Bst2BI	CACGAG	1 cut(s)	1590
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	161, 616, 1294, 1831
Bst6I	CTCTTC	1 cut(s)	390
BstBAI	YACGTR	1 cut(s)	561
BstC8I	GCNNGC	4 cut(s)	1245, 1350, 1741, 2060
BstDEI	CTNAG	3 cut(s)	832, 1557, 1917
BstDSI	CCRYGG	2 cut(s)	402, 717
BstF5I	GGATG	3 cut(s)	451, 820, 1362
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	4 cut(s)	831, 1033, 1107, 1212
BstMAI	GTCTC	2 cut(s)	1150, 1408
BstMBI	GATC	4 cut(s)	828, 1030, 1104, 1209
BstMWI	GCNNNNNNNGC	3 cut(s)	713, 1804, 2055
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	997, 1163
BstSCI	CCNGG	3 cut(s)	88, 89, 232
BstSFI	CTRYAG	1 cut(s)	1639
BstSLI	GKGCMC	1 cut(s)	466
BstSNI	TACGTA	1 cut(s)	561
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	2061
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	828
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	4 cut(s)	401, 464, 1142, 2062
BtgI	CCRYGG	2 cut(s)	402, 717
BtsCI	GGATG	3 cut(s)	451, 820, 1362
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	303, 612
Cac8I	GCNNGC	4 cut(s)	1245, 1350, 1741, 2060
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	1530
Cfr13I	GGNCC	2 cut(s)	462, 463
Cfr9I	CCCGGG	1 cut(s)	89
CseI	GACGC	1 cut(s)	1561
Csp6I	GTAC	2 cut(s)	750, 1089
CspAI	ACCGGT	1 cut(s)	1530
CviAII	CATG	5 cut(s)	403, 718, 994, 1160, 2046
CviQI	GTAC	2 cut(s)	750, 1089
DdeI	CTNAG	3 cut(s)	832, 1557, 1917
DpnI	GATC	4 cut(s)	830, 1032, 1106, 1211
DpnII	GATC	4 cut(s)	828, 1030, 1104, 1209
DraI	TTTAAA	1 cut(s)	825
DraIII	CACNNNGTG	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco105I	TACGTA	1 cut(s)	561
Eco130I	CCWWGG	4 cut(s)	6, 402, 717, 2027
Eco24I	GRGCYC	1 cut(s)	466
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	462, 463
EcoRI	GAATTC	2 cut(s)	80, 1148
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	4 cut(s)	6, 402, 717, 2027
EcoT22I	ATGCAT	1 cut(s)	1118
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	4 cut(s)	6, 402, 717, 2027
FaeI	CATG	5 cut(s)	406, 721, 997, 1163, 2049
FalI	AAGNNNNNCTT	2 cut(s)	1011, 1043
FaqI	GGGAC	2 cut(s)	909, 1020
FatI	CATG	5 cut(s)	402, 717, 993, 1159, 2045
FbaI	TGATCA	2 cut(s)	1030, 1209
Fnu4HI	GCNGC	1 cut(s)	2050
FokI	GGATG	3 cut(s)	458, 827, 1369
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	2050
FspBI	CTAG	4 cut(s)	77, 1353, 1469, 1563
GluI	GCNGC	1 cut(s)	2050
GsuI	CTGGAG	4 cut(s)	1174, 1461, 1913, 2038
HaeIII	GGCC	4 cut(s)	401, 464, 1142, 2062
HapII	CCGG	2 cut(s)	90, 1531
HgaI	GACGC	1 cut(s)	1561
Hin1II	CATG	5 cut(s)	406, 721, 997, 1163, 2049
HincII	GTYRAC	3 cut(s)	184, 1135, 1168
HindII	GTYRAC	3 cut(s)	184, 1135, 1168
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	4 cut(s)	145, 329, 1622, 1888
HpaII	CCGG	2 cut(s)	90, 1531
HphI	GGTGA	1 cut(s)	1664
Hpy166II	GTNNAC	5 cut(s)	184, 380, 1135, 1168, 1528
Hpy188I	TCNGA	4 cut(s)	328, 334, 1686, 1759
Hpy188III	TCNNGA	9 cut(s)	1028, 1153, 1207, 1367, 1499, 1576, 1709, 1892, 2003
Hpy8I	GTNNAC	5 cut(s)	184, 380, 1135, 1168, 1528
Hpy99I	CGWCG	1 cut(s)	1577
HpyAV	CCTTC	5 cut(s)	739, 796, 907, 1013, 1118
HpyCH4III	ACNGT	4 cut(s)	161, 616, 1294, 1831
HpyCH4IV	ACGT	4 cut(s)	560, 777, 1764, 1852
HpyF10VI	GCNNNNNNNGC	3 cut(s)	713, 1804, 2055
HpyF3I	CTNAG	3 cut(s)	832, 1557, 1917
HpySE526I	ACGT	4 cut(s)	560, 777, 1764, 1852
Hsp92II	CATG	5 cut(s)	406, 721, 997, 1163, 2049
Ksp22I	TGATCA	2 cut(s)	1030, 1209
Kzo9I	GATC	4 cut(s)	828, 1030, 1104, 1209
LmnI	GCTCC	2 cut(s)	1345, 2057
Lsp1109I	GCAGC	1 cut(s)	2061
LweI	GCATC	3 cut(s)	646, 808, 1103
MaeI	CTAG	4 cut(s)	77, 1353, 1469, 1563
MaeII	ACGT	4 cut(s)	560, 777, 1764, 1852
MaeIII	GTNAC	7 cut(s)	346, 556, 610, 661, 766, 1968, 1987
MalI	GATC	4 cut(s)	830, 1032, 1106, 1211
MboI	GATC	4 cut(s)	828, 1030, 1104, 1209
MboII	GAAGA	6 cut(s)	228, 407, 1591, 1673, 1897, 2064
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	828
MhlI	GDGCHC	1 cut(s)	466
MluI	ACGCGT	1 cut(s)	68
Mph1103I	ATGCAT	1 cut(s)	1118
MroXI	GAANNNNTTC	1 cut(s)	935
MslI	CAYNNNNRTG	4 cut(s)	617, 1313, 1324, 1788
MspA1I	CMGCKG	1 cut(s)	2058
MspI	CCGG	2 cut(s)	90, 1531
MspR9I	CCNGG	3 cut(s)	90, 91, 234
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	3 cut(s)	713, 1804, 2055
NciI	CCSGG	2 cut(s)	90, 91
NcoI	CCATGG	2 cut(s)	402, 717
NdeII	GATC	4 cut(s)	828, 1030, 1104, 1209
NlaIII	CATG	5 cut(s)	406, 721, 997, 1163, 2049
NlaIV	GGNNCC	2 cut(s)	463, 464
NmuCI	GTSAC	2 cut(s)	610, 1987
NsiI	ATGCAT	1 cut(s)	1118
NspI	RCATGY	2 cut(s)	997, 1163
OliI	CACNNNNGTG	1 cut(s)	1788
PdmI	GAANNNNTTC	1 cut(s)	935
PfeI	GAWTC	4 cut(s)	145, 329, 1622, 1888
PinAI	ACCGGT	1 cut(s)	1530
PkrI	GCNGC	1 cut(s)	2051
Ppu21I	YACGTR	1 cut(s)	561
PshBI	ATTAAT	2 cut(s)	366, 576
PsiI	TTATAA	4 cut(s)	249, 260, 470, 1095
Psp1406I	AACGTT	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	463, 464
PspOMI	GGGCCC	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	462, 463
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	828
PvuII	CAGCTG	1 cut(s)	2058
RsaI	GTAC	2 cut(s)	751, 1090
RsaNI	GTAC	2 cut(s)	750, 1089
RseI	CAYNNNNRTG	4 cut(s)	617, 1313, 1324, 1788
SatI	GCNGC	1 cut(s)	2050
Sau3AI	GATC	4 cut(s)	828, 1030, 1104, 1209
Sau96I	GGNCC	2 cut(s)	462, 463
ScrFI	CCNGG	3 cut(s)	90, 91, 234
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	3 cut(s)	646, 808, 1103
SfcI	CTRYAG	1 cut(s)	1639
SmaI	CCCGGG	1 cut(s)	91
SmiMI	CAYNNNNRTG	4 cut(s)	617, 1313, 1324, 1788
SnaBI	TACGTA	1 cut(s)	561
SspMI	CTAG	4 cut(s)	77, 1353, 1469, 1563
StyD4I	CCNGG	3 cut(s)	88, 89, 232
StyI	CCWWGG	4 cut(s)	6, 402, 717, 2027
TaaI	ACNGT	4 cut(s)	161, 616, 1294, 1831
TaiI	ACGT	4 cut(s)	563, 780, 1767, 1855
TaqI	TCGA	2 cut(s)	1107, 1575
TatI	WGTACW	1 cut(s)	1088
TfiI	GAWTC	4 cut(s)	145, 329, 1622, 1888
TscAI	CASTG	2 cut(s)	303, 619
TseFI	GTSAC	2 cut(s)	610, 1987
TseI	GCWGC	1 cut(s)	2049
Tsp45I	GTSAC	2 cut(s)	610, 1987
TspDTI	ATGAA	7 cut(s)	42, 158, 857, 944, 1670, 1898, 2034
TspGWI	ACGGA	2 cut(s)	1440, 2006
TspMI	CCCGGG	1 cut(s)	89
TspRI	CASTG	2 cut(s)	303, 619
VspI	ATTAAT	2 cut(s)	366, 576
XapI	RAATTY	2 cut(s)	80, 1148
XceI	RCATGY	2 cut(s)	997, 1163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmaI	CCCGGG	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	935
XspI	CTAG	4 cut(s)	77, 1353, 1469, 1563
Zsp2I	ATGCAT	1 cut(s)	1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.