Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Reverse (-)

25213736 .. 25215096

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGCTGCAATTGCAGGTTCATGGTCTTCCAAGCCCTCTCCAATCACTTCGCAACACCCATCATTATCTTCTAAGATTGGCCTTAAGCCTTGGACGCTGTCCACAAAACCCAACTACCCCATTTCCAGAACAAATCAAAGCAAAAATCAGAACTACTTTTCATCATCCTCCACACAATTAAATGCGACCTTGAAGAATCCAAGAGGCTTCGGACGGCCACCAAAGAAAAGCAAGAAGACCGCCACCAAGAAGAAGACGGAACAAAACAATGACAGTGGCAATGAAGATGAGGAAGACGAAGAGGACGAAGCAGAAGAAGGCATAATACCAGAGATGGTGACCAACAGGATGATAACCAGGATGGGATTCACAGTTGGGCTTCCACTGTTTATGGGACTATTGTTTTTCCCATTCTTCTACTACTTGAAAGTTGGTCTCAAAATTGATGTGCCCACATGGGTGCCCTTCATTGTGTCATTTGTGTTCTTTGGGACAGCTCTTGCGGGAGTGAGCTATGGGATTGTGTCCTCTAGTTGGGACCCTATGAGGGAAGGGTCGCTCTTGGGTTGGAACGAGGCTCAGAAGAATTGGCCTGTATTTTGGAGATCTCTTAGGGGTGGATCGAGGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

212

Amino Acids

23.7

Weight (kDa)

9.67

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3464	PF11947	64 - 204	2.5e-50	Photosynthesis affected mutant 68

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	463
AciI	CCGC	2 cut(s)	243, 506
AclWI	GGATC	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	537, 550
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	196, 430
AjnI	CCWGG	1 cut(s)	359
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	8, 500, 516
AluI	AGCT	3 cut(s)	8, 500, 516
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	631
AoxI	GGCC	3 cut(s)	82, 218, 593
ApeKI	GCWGC	2 cut(s)	5, 8
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	541
BaeGI	GKGCMC	2 cut(s)	456, 468
BanI	GGYRCC	1 cut(s)	463
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BbsI	GAAGAC	4 cut(s)	21, 245, 263, 303
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	70, 331, 358
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	2 cut(s)	534, 637
BfrI	CTTAAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	8
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	3 cut(s)	465, 542, 543
BmrFI	CCNGG	1 cut(s)	361
BpiI	GAAGAC	4 cut(s)	21, 245, 263, 303
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 550
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	167, 357, 369
BseLI	CCNNNNNNNGG	2 cut(s)	537, 550
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	596
BseSI	GKGCMC	2 cut(s)	456, 468
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	3 cut(s)	84, 220, 595
BshNI	GGYRCC	1 cut(s)	463
BslFI	GGGAC	3 cut(s)	411, 508, 554
BslI	CCNNNNNNNGG	2 cut(s)	537, 550
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	3 cut(s)	411, 508, 554
BsnI	GGCC	3 cut(s)	84, 220, 595
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	456, 468
Bsp143I	GATC	2 cut(s)	608, 623
BspACI	CCGC	2 cut(s)	243, 506
BspANI	GGCC	3 cut(s)	84, 220, 595
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	3 cut(s)	465, 542, 543
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	463
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	608, 623
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	3 cut(s)	278, 376, 390
Bst6I	CTCTTC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	86
BstDEI	CTNAG	3 cut(s)	75, 582, 614
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	3 cut(s)	167, 357, 369
BstKTI	GATC	2 cut(s)	611, 626
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	608, 623
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 97
BstNI	CCWGG	1 cut(s)	361
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	2 cut(s)	456, 468
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	4 cut(s)	21, 245, 263, 303
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	3 cut(s)	84, 220, 595
BtsCI	GGATG	3 cut(s)	167, 357, 369
BtsIMutI	CAGTG	2 cut(s)	283, 386
BveI	ACCTGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	541
CseI	GACGC	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	2 cut(s)	24, 459
DdeI	CTNAG	3 cut(s)	75, 582, 614
DpnI	GATC	2 cut(s)	610, 625
DpnII	GATC	2 cut(s)	608, 623
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	541
Eco91I	GGTNACC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	27, 462
FaiI	YATR	6 cut(s)	25, 326, 395, 460, 519, 548
FaqI	GGGAC	3 cut(s)	411, 508, 554
FatI	CATG	2 cut(s)	23, 458
FauI	CCCGC	1 cut(s)	499
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	3 cut(s)	154, 364, 376
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	2 cut(s)	534, 637
GluI	GCNGC	2 cut(s)	6, 9
HaeIII	GGCC	3 cut(s)	84, 220, 595
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	27, 462
HinfI	GANTC	2 cut(s)	199, 369
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	3 cut(s)	153, 215, 585
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	314, 478, 548
HpyCH4III	ACNGT	3 cut(s)	278, 376, 390
HpyCH4V	TGCA	2 cut(s)	11, 17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 97
HpyF3I	CTNAG	3 cut(s)	75, 582, 614
Hsp92II	CATG	2 cut(s)	27, 462
KflI	GGGWCCC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	608, 623
LpnPI	CCDG	7 cut(s)	3, 142, 334, 345, 346, 373, 609
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	534, 637
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	610, 625
MboI	GATC	2 cut(s)	608, 623
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	2 cut(s)	456, 468
MluCI	AATT	4 cut(s)	12, 179, 444, 589
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	9 cut(s)	49, 181, 200, 286, 298, 541, 543, 571, 621
MseI	TTAA	2 cut(s)	87, 182
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	14, 97
NdeII	GATC	2 cut(s)	608, 623
NlaIII	CATG	2 cut(s)	27, 462
NlaIV	GGNNCC	3 cut(s)	465, 542, 543
NmuCI	GTSAC	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	199, 369
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	7, 10
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	359
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	465, 542, 543
PspPI	GGNCC	1 cut(s)	541
PspPPI	RGGWCCY	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	87, 182
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	2 cut(s)	608, 623
Sau96I	GGNCC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	456, 468
SetI	ASST	5 cut(s)	10, 22, 194, 502, 518
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	12, 179, 444, 589
SsiI	CCGC	2 cut(s)	243, 506
SspMI	CTAG	2 cut(s)	534, 637
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	3 cut(s)	278, 376, 390
TaqI	TCGA	1 cut(s)	626
TasI	AATT	4 cut(s)	12, 179, 444, 589
TfiI	GAWTC	2 cut(s)	199, 369
Tru1I	TTAA	2 cut(s)	87, 182
Tru9I	TTAA	2 cut(s)	87, 182
TscAI	CASTG	2 cut(s)	283, 393
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	4 cut(s)	12, 153, 300, 460
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	283, 393
Tth111I	GACNNNGTC	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	541
XspI	CTAG	2 cut(s)	534, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.