Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Reverse (-)

35935994 .. 35936650

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTTAGGTTTGCAAAAGGACTCTTTAGTCAAATGAGAGCTGCTGGGGTTAGTCCTACTGCGATTGACTACAACGTTTTGATGGTATCCTTATGCAAGGAGAGTAGTTTGGAGCAAGCTAGGATGCTATTTGAAGAGATGAGGCGTACAAATTGTGTGCCAAATCTGGTCTCATTTAATACAATAATTGATGAAACTCTAAAAGCGGGAGATGTTGTATCTGCTCAAGACTTGCTACAGGACATGTTTAAAATGGATTTAACTCCTGATGCCATTACCTTTTCCTTATTAGTAAGCTGGTTCTCGAAACTTGGGCTTTTGGATGAGGCTAAAATGTTTCTCAAGAATATGATTGCTTGTGGTGTTGAACCTGATGCCTTTGTTTTCGATTCTTTACTAAGGAGCTATTGTTTAAGGGGTGACACAGAAGAAATCGTTAATTTGCTTTATCAGATGGCAGACAAGGGTGTTGTTCTTGACTCAGAAATAACTTCTACTATCTTGGAATGCCTTAGTGAAATCCCTGACGATGTTGATGTGATGAAGATTCTTCCAACTTTTTCCCAAGAAACATCAAAAGGAGCCAGCATTACCTGCAATGAGCTATTGGTGAAACTCAATAACTCTCACCCAGAACTTAGATTATATGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

219

Amino Acids

24.32

Weight (kDa)

4.52

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	7 - 169	1.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	24 - 64	3.7e-10	PPR repeat family
PPR_2	PF13041	54 - 102	3.5e-10	PPR repeat family
PPR_2	PF13041	89 - 137	4e-07	PPR repeat family
TPR_24	PF23276	121 - 192	9.8e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	602
AciI	CCGC	1 cut(s)	206
AclI	AACGTT	1 cut(s)	75
AfaI	GTAC	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	134, 368
AluBI	AGCT	5 cut(s)	41, 119, 297, 405, 604
AluI	AGCT	5 cut(s)	41, 119, 297, 405, 604
Alw26I	GTCTC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	41, 650
AsuHPI	GGTGA	3 cut(s)	431, 620, 622
BbvI	GCAGC	2 cut(s)	28, 637
BccI	CCATC	2 cut(s)	76, 448
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	42, 651
BlsI	GCNGC	2 cut(s)	43, 652
BmiI	GGNNCC	1 cut(s)	583
BmsI	GCATC	3 cut(s)	114, 259, 364
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	210, 326
BsaI	GGTCTC	1 cut(s)	175
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 394, 424
Bse3DI	GCAATG	1 cut(s)	604
BseGI	GGATG	2 cut(s)	129, 328
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	28, 637
BseYI	CCCAGC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	512
Bso31I	GGTCTC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	604
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	117, 586
BstDEI	CTNAG	5 cut(s)	5, 398, 481, 512, 638
BstF5I	GGATG	2 cut(s)	129, 328
BstMAI	GTCTC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	28, 637
BsuI	GTATCC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	129, 328
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	2 cut(s)	117, 586
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	8 cut(s)	41, 119, 297, 316, 329, 405, 584, 604
CviKI_1	RGCY	8 cut(s)	41, 119, 297, 316, 329, 405, 584, 604
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	5 cut(s)	5, 398, 481, 512, 638
DraI	TTTAAA	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	27
DseDI	GACNNNNNNGTC	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	247
FaiI	YATR	5 cut(s)	94, 245, 350, 646, 648
FatI	CATG	1 cut(s)	243
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	42, 651
FokI	GGATG	2 cut(s)	136, 335
Fsp4HI	GCNGC	2 cut(s)	42, 651
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	42, 651
GsaI	CCCAGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	4 cut(s)	21, 389, 479, 547
HphI	GGTGA	3 cut(s)	431, 620, 622
Hpy188I	TCNGA	2 cut(s)	453, 484
Hpy188III	TCNNGA	5 cut(s)	227, 266, 304, 343, 476
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	14, 96, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	594
HpyF3I	CTNAG	5 cut(s)	5, 398, 481, 512, 638
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	247
LmnI	GCTCC	3 cut(s)	112, 402, 581
Lsp1109I	GCAGC	2 cut(s)	28, 637
LweI	GCATC	3 cut(s)	114, 259, 364
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	419
MboII	GAAGA	4 cut(s)	146, 440, 542, 556
MluCI	AATT	3 cut(s)	151, 186, 439
MlyI	GAGTC	2 cut(s)	15, 473
MmeI	TCCRAC	1 cut(s)	578
MnlI	CCTC	2 cut(s)	135, 319
MseI	TTAA	5 cut(s)	177, 249, 260, 413, 438
Mva1269I	GAATGC	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	594
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	247
PciI	ACATGT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	389, 547
PkrI	GCNGC	2 cut(s)	43, 652
PleI	GAGTC	2 cut(s)	15, 473
PpsI	GAGTC	2 cut(s)	15, 473
PscI	ACATGT	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	583
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	177, 249, 260, 413, 438
SatI	GCNGC	2 cut(s)	42, 651
SchI	GAGTC	2 cut(s)	15, 473
SfaNI	GCATC	3 cut(s)	114, 259, 364
SfcI	CTRYAG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	225, 341
SmoI	CTYRAG	2 cut(s)	225, 341
Sse9I	AATT	3 cut(s)	151, 186, 439
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	305, 387
TasI	AATT	3 cut(s)	151, 186, 439
TfiI	GAWTC	2 cut(s)	389, 547
Tru1I	TTAA	5 cut(s)	177, 249, 260, 413, 438
Tru9I	TTAA	5 cut(s)	177, 249, 260, 413, 438
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	2 cut(s)	41, 650
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	2 cut(s)	207, 557
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.