Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Reverse (-)

50035340 .. 50039926

Gene Structure 4587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1399800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTTCTCAAGAACATGATTGCTTGTGGTGTTGAACCTGATGCCTTTGTTTTCGATTCTTTACTAAAGGGCTATTGTTTAAAGGGTGACACAGAAGAAATCGTTAATTTGCTTCATCAGATGGCAGACAAGGGTGTTGTTCTTGACTCAGAAATAACTTCTACTATCTTGGAATGCCTTAGTGAAATCTCTGATGATGTTGATGTGATGAAGATTCTTCCAACTTTTTCCCAAGAAACATCAAAAGGAGCCAGCATTACCTGCGATGAGCTATTGGTGAAACTCAATAACTCTCACCCAGAACTTAGATTATATGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

108

Amino Acids

11.74

Weight (kDa)

4.36

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	4 - 79	1.5e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	10 - 41	3.5e-06	PPR repeat
PPR_2	PF13041	13 - 51	2.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
ApeKI	GCWGC	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	98, 287, 289
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	148, 179, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	253
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	3 cut(s)	72, 251, 271
CviKI_1	RGCY	3 cut(s)	72, 251, 271
DdeI	CTNAG	3 cut(s)	148, 179, 305
DraI	TTTAAA	1 cut(s)	81
FaeI	CATG	1 cut(s)	19
FaiI	YATR	3 cut(s)	17, 313, 315
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	3 cut(s)	56, 146, 214
HphI	GGTGA	3 cut(s)	98, 287, 289
Hpy188I	TCNGA	3 cut(s)	120, 151, 193
Hpy188III	TCNNGA	2 cut(s)	10, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	3 cut(s)	148, 179, 305
Hsp92II	CATG	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	4 cut(s)	51, 265, 274, 312
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	107, 209, 223
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	245
MseI	TTAA	2 cut(s)	80, 105
Mva1269I	GAATGC	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	56, 214
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	80, 105
SatI	GCNGC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	140
SetI	ASST	3 cut(s)	40, 263, 273
SfaNI	GCATC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	56, 214
Tru1I	TTAA	2 cut(s)	80, 105
Tru9I	TTAA	2 cut(s)	80, 105
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	104, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.