Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Reverse (-)

47399875 .. 47407370

Gene Structure 7496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGCGGTCATTACAGGTTTCCAAGACACGGCTCTTCTCCTCACTGCCATCTATTACTCCCCTCTCTGATGTAGAAACCCAATTGCGAGCTTTTTGGAAGGACCCGGATCCTAAAATTTCGGAGGCGCTTTCTCTTTTTCATCATGCCATACATTCCAACCGCCTGCCTCCGGGGTCAGCCTCAGCCTGCAACTTCCTTGTAGACACTCTCGCAAGGTCAAAAAATTGTGAACTATCATTCTCAGTTTATACCAAGATGACCAAGGTTGGTATTATTCCAAGCTTTATATCATTGAGTTGTTTAGTTTCATATTTTGTCAATACACGTAAGCTAGAATTCGCACCCGGGGTTTTCGGCTTGGTATTAAAGCGTGGATTTCAGTTAAATGAGTATGTTATGAATCTTGCATTAAATGGTTTTTGTTCTAATGATGAGGTTGACAAGGCAATTGAGTTGTTTAGTGTAATGAGAAGACATTTTGTAAAGCCTGGTATCCGTAGTTATAACATTCTTATAAATGGACTTTGCAAAGCGAAAAAGTTGAAAGAAGCAGTGGAATTGTTGGTTGATATGGAGGTGTCGGATTCTGAACCGAATGTGGTAACATACAGCACATTGATTAATGGGTTTTGTAAACAGGGTAGAGTGGACGAGGCCATGGGTTTCTTGGAGGAGATGAGGCAAAAGGGTTTGGAAATGGATGTTTTTGTATATGGGGCCCTTATAAGTGGTTTTTGTGCTAAAGGGAGTTTTGATAGAGGAAAACAACTTTTTGATGAGATGTTAAACAAGGGTATTTCTCCTAATGTGGTTACGTATAGTTGTTTGATTAATTATCTTTCAAAGACAGGTAAGTGGAAAGAAGTCACTGTGATGGTAAATGATATGACACAATGTGGAGTTCCCCCTGATGCTATTACTTACACAGGTATCCTTGATGGGCTTTTCAAAAATGGAATGGCTACAAAAGCCATGGCGATGTTCAATTTAATGCTATTGAAGGGTACAGAGCCTAATAATGTAACATACAACGTTATGATTGATGGACTATGCAAGGAGGGGTTGGTGGATGATGCTTTCAAGATCTTAGAAATGATGAAAGGGAAAGGTGTAAAGCCTGATGTAATCACTTACAACACATTACTAATGGGACTATCCTGTGATGGGAGGGTTGATGAGATGATGCAACTTTTCAGTAAGTTAACAAATGATGAGAACTTTGTTGAGCCAGATGTTATGACATATAACATGCTCATTTTGGGACTGTGCAAGGAAGGTAATCTTGATCAGGCTATGGAGATGTATCATACAATGGTTGAAAGGGGCATTTCTGGTAGCTTATGTACTTATAACACTTTGATCGACAGATGCATACAGGAAGGATTAGTTGACAAGGCCGTAGAATTCTGGAGACATGCAGTTGACTTGGGAGTTATACCTAACTCAATCACTTATGGTGTCTTGATCAATGGATTTTGCAAAAATCAAATGGTCAGGCTTGCAAAAGGACTTTTTAGTAAAATGAGAGCTTCTGGGATTAGTCCTACTGTAATTGACTACAACACTTTGATGTCATCATTGTGCAAGGAGGGTAGTTTGGAGCAAGCTAGGATGTTGTTTCAAGAAATGAGAACTGCAAATCATTCACCTTGTGTTGTCTCATTTAATACCATAATTGACGGACTTCTTAAAGCTGGAGATATTAAATCTACTAAAGAGTTGCTAGAGGATATGTTCAAATTGGGTTTAATTCCCGATAGAATTACTTTCTCTACATTAGTAAACCGGTTTTCAAAACTTGGGCTATTGGCTGAGGCTAGAATGTGCGTTGAGAAGATGATTGCTCATGGTATTGAACCTGATGTCTTTGTATTCGATTCTTTATTAAAGGGCTACAGTTCTAAAGGTGAAACAGAAGAAATTGTTAATTTGCTTCATCAGATGGCAGAAAAGGGTGTTGTTCTTGACAAAGATATAACTTCTACCATCTTGGCGTGCCTCTGTCAAATCTCTGATGACGTTGATGTGATGGAGGTTCTCCCTACTTTTTCCAAAGAGACATCGAAAGCAATAAGCATTACCTGCAATGAGCTATTGATGAAAGTCAATAAATTTTATCCGGAACTAAAGTTATGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

714

Amino Acids

79.5

Weight (kDa)

5.89

Isoelectric Point (pI)

22.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	112 - 223	2.4e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	129 - 177	6.1e-12	PPR repeat family
PPR_1	PF12854	161 - 192	5.2e-10	PPR repeat
PPR_2	PF13041	163 - 212	4.4e-17	PPR repeat family
PPR	PF01535	167 - 193	1.3e-06	PPR repeat
PPR_1	PF12854	197 - 227	2.6e-16	PPR repeat
PPR_2	PF13041	198 - 246	5.2e-17	PPR repeat family
PPR	PF01535	201 - 231	2.7e-10	PPR repeat
PPR_3	PF13812	223 - 280	9.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	229 - 261	3.4e-08	PPR repeat
PPR_2	PF13041	234 - 278	1.1e-13	PPR repeat family
PPR	PF01535	237 - 266	7.8e-06	PPR repeat
PPR_long	PF17177	250 - 326	3.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	268 - 317	4.2e-14	PPR repeat family
PPR_3	PF13812	292 - 348	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	300 - 331	2.7e-06	PPR repeat
PPR_2	PF13041	308 - 352	4.5e-13	PPR repeat family
TPR_24	PF23276	319 - 437	2.4e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	334 - 367	9.5e-14	PPR repeat
PPR	PF01535	341 - 371	4.1e-10	PPR repeat
PPR_2	PF13041	341 - 385	6.2e-17	PPR repeat family
PPR_1	PF12854	369 - 400	1.5e-08	PPR repeat
PPR_3	PF13812	408 - 457	8.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	408 - 439	4.3e-11	PPR repeat
PPR_2	PF13041	410 - 457	2.2e-14	PPR repeat family
PPR	PF01535	414 - 443	4.2e-07	PPR repeat
PPR_long	PF17177	424 - 545	4.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	448 - 494	1.3e-12	PPR repeat family
PPR_3	PF13812	472 - 526	2.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	477 - 509	3e-08	PPR repeat
PPR	PF01535	483 - 513	3.8e-06	PPR repeat
PPR_1	PF12854	512 - 544	1.2e-09	PPR repeat
PPR_2	PF13041	515 - 550	6.6e-07	PPR repeat family
PPR	PF01535	520 - 546	2.4e-06	PPR repeat
PPR_long	PF17177	532 - 651	3e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	550 - 599	4.6e-12	PPR repeat family
PPR_2	PF13041	620 - 668	7.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	504, 515, 725, 1350
Acc36I	ACCTGC	1 cut(s)	2090
AccI	GTMKAC	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	2119
AciI	CCGC	2 cut(s)	4, 160
AclI	AACGTT	1 cut(s)	1032
AclWI	GGATC	2 cut(s)	101, 114
AcsI	RAATTY	4 cut(s)	114, 335, 1403, 2111
AdeI	CACNNNGTG	2 cut(s)	896, 1652
AfaI	GTAC	2 cut(s)	1006, 1345
AfiI	CCNNNNNNNGG	3 cut(s)	27, 169, 1164
AflIII	ACRYGT	1 cut(s)	323
AgeI	ACCGGT	1 cut(s)	1785
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	8 cut(s)	89, 282, 331, 1338, 1529, 1607, 1694, 2092
AluI	AGCT	8 cut(s)	89, 282, 331, 1338, 1529, 1607, 1694, 2092
Alw26I	GTCTC	3 cut(s)	1405, 1663, 2051
AlwI	GGATC	2 cut(s)	101, 114
Ama87I	CYCGRG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	2119
AoxI	GGCC	3 cut(s)	654, 717, 1395
ApaI	GGGCCC	1 cut(s)	721
ApeKI	GCWGC	1 cut(s)	2138
ApoI	RAATTY	4 cut(s)	114, 335, 1403, 2111
AseI	ATTAAT	2 cut(s)	621, 831
AsiGI	ACCGGT	1 cut(s)	1785
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	3 cut(s)	100, 717, 718
AsuC2I	CCSGG	4 cut(s)	104, 171, 345, 346
AsuHPI	GGTGA	2 cut(s)	1638, 1919
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	721
BaeI	ACNNNNGTAYC	2 cut(s)	913, 946
BamHI	GGATCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	478
BbvCI	CCTCAGC	2 cut(s)	181, 1812
BbvI	GCAGC	1 cut(s)	2125
BccI	CCATC	8 cut(s)	55, 868, 932, 1037, 1157, 1936, 1994, 2023
BceAI	ACGGC	2 cut(s)	44, 1382
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	2 cut(s)	503, 941
BclI	TGATCA	2 cut(s)	1285, 1464
BcnI	CCSGG	4 cut(s)	104, 171, 345, 346
BcoDI	GTCTC	3 cut(s)	1405, 1663, 2051
BfaI	CTAG	4 cut(s)	332, 1608, 1724, 1818
BfmI	CTRYAG	1 cut(s)	1894
BfoI	RGCGCY	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	2090
BfuI	GTATCC	2 cut(s)	503, 941
BglII	AGATCT	1 cut(s)	1083
BisI	GCNGC	1 cut(s)	2139
BlsI	GCNGC	1 cut(s)	2140
Bme1390I	CCNGG	5 cut(s)	104, 171, 345, 346, 489
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	100, 717, 718
BmiI	GGNNCC	4 cut(s)	102, 108, 718, 719
BmrFI	CCNGG	5 cut(s)	104, 171, 345, 346, 489
BmsI	GCATC	4 cut(s)	901, 1063, 1173, 1358
BpiI	GAAGAC	1 cut(s)	478
BpmI	CTGGAG	2 cut(s)	1429, 1716
Bpu10I	CCTNAGC	2 cut(s)	181, 1812
BpuMI	CCSGG	4 cut(s)	104, 171, 345, 346
BsaAI	YACGTR	2 cut(s)	326, 816
BsaJI	CCNNGG	6 cut(s)	170, 261, 344, 345, 657, 972
BsaWI	WCCGGW	2 cut(s)	1785, 2119
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 169, 1164
Bse118I	RCCGGY	1 cut(s)	1785
Bse3DI	GCAATG	1 cut(s)	2092
BseAI	TCCGGA	1 cut(s)	2119
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	6 cut(s)	170, 261, 344, 345, 657, 972
BseGI	GGATG	3 cut(s)	706, 1075, 1617
BseLI	CCNNNNNNNGG	3 cut(s)	27, 169, 1164
BseMI	GCAATG	1 cut(s)	2092
BseMII	CTCAG	3 cut(s)	195, 255, 1803
BseRI	GAGGAG	2 cut(s)	28, 686
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	1 cut(s)	2125
BshFI	GGCC	3 cut(s)	656, 719, 1397
BshTI	ACCGGT	1 cut(s)	1785
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
BslFI	GGGAC	2 cut(s)	1164, 1275
BslI	CCNNNNNNNGG	3 cut(s)	27, 169, 1164
BsmAI	GTCTC	3 cut(s)	1405, 1663, 2051
BsmFI	GGGAC	2 cut(s)	1164, 1275
BsnI	GGCC	3 cut(s)	656, 719, 1397
BsoBI	CYCGRG	1 cut(s)	344
Bsp120I	GGGCCC	1 cut(s)	717
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp13I	TCCGGA	1 cut(s)	2119
Bsp143I	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
Bsp19I	CCATGG	2 cut(s)	657, 972
BspACI	CCGC	2 cut(s)	4, 160
BspANI	GGCC	3 cut(s)	656, 719, 1397
BspCNI	CTCAG	3 cut(s)	194, 254, 1804
BspEI	TCCGGA	1 cut(s)	2119
BspLI	GGNNCC	4 cut(s)	102, 108, 718, 719
BspMI	ACCTGC	1 cut(s)	2090
BspPI	GGATC	2 cut(s)	101, 114
BspQI	GCTCTTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	2092
BsrFI	RCCGGY	1 cut(s)	1785
BssAI	RCCGGY	1 cut(s)	1785
BssECI	CCNNGG	6 cut(s)	170, 261, 344, 345, 657, 972
BssMI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
BssT1I	CCWWGG	3 cut(s)	261, 657, 972
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	4 cut(s)	871, 1266, 1549, 1898
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	2082
BstBAI	YACGTR	2 cut(s)	326, 816
BstC8I	GCNNGC	6 cut(s)	87, 164, 187, 1500, 1605, 1996
BstDEI	CTNAG	4 cut(s)	181, 241, 1087, 1812
BstDSI	CCRYGG	2 cut(s)	657, 972
BstF5I	GGATG	3 cut(s)	706, 1075, 1617
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	5 cut(s)	109, 1086, 1288, 1362, 1467
BstMAI	GTCTC	3 cut(s)	1405, 1663, 2051
BstMBI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
BstMWI	GCNNNNNNNGC	2 cut(s)	968, 2082
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	2 cut(s)	1252, 1418
BstSCI	CCNGG	5 cut(s)	102, 169, 343, 344, 487
BstSFI	CTRYAG	1 cut(s)	1894
BstSLI	GKGCMC	1 cut(s)	721
BstSNI	TACGTA	1 cut(s)	816
BstV1I	GCAGC	1 cut(s)	2125
BstV2I	GAAGAC	1 cut(s)	478
BstX2I	RGATCY	2 cut(s)	106, 1083
BstYI	RGATCY	2 cut(s)	106, 1083
BsuI	GTATCC	2 cut(s)	503, 941
BsuRI	GGCC	3 cut(s)	656, 719, 1397
BtgI	CCRYGG	2 cut(s)	657, 972
BtgZI	GCGATG	1 cut(s)	992
BtsCI	GGATG	3 cut(s)	706, 1075, 1617
BtsI	GCAGTG	2 cut(s)	41, 558
BtsIMutI	CAGTG	3 cut(s)	41, 558, 867
BveI	ACCTGC	1 cut(s)	2090
Cac8I	GCNNGC	6 cut(s)	87, 164, 187, 1500, 1605, 1996
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	1785
Cfr13I	GGNCC	3 cut(s)	100, 717, 718
Cfr9I	CCCGGG	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	1005, 1344
CspAI	ACCGGT	1 cut(s)	1785
CviAII	CATG	6 cut(s)	143, 658, 973, 1249, 1415, 1847
CviQI	GTAC	2 cut(s)	1005, 1344
DdeI	CTNAG	4 cut(s)	181, 241, 1087, 1812
DpnI	GATC	5 cut(s)	108, 1085, 1287, 1361, 1466
DpnII	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
DraIII	CACNNNGTG	2 cut(s)	896, 1652
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco105I	TACGTA	1 cut(s)	816
Eco130I	CCWWGG	3 cut(s)	261, 657, 972
Eco24I	GRGCYC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	3 cut(s)	100, 717, 718
EcoRI	GAATTC	2 cut(s)	335, 1403
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	3 cut(s)	261, 657, 972
EcoT22I	ATGCAT	1 cut(s)	1373
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	3 cut(s)	261, 657, 972
FaeI	CATG	6 cut(s)	146, 661, 976, 1252, 1418, 1850
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	2 cut(s)	1164, 1275
FatI	CATG	6 cut(s)	142, 657, 972, 1248, 1414, 1846
FbaI	TGATCA	2 cut(s)	1285, 1464
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	2139
FokI	GGATG	3 cut(s)	713, 1082, 1624
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	1 cut(s)	2139
FspBI	CTAG	4 cut(s)	332, 1608, 1724, 1818
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	2139
GsuI	CTGGAG	2 cut(s)	1429, 1716
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	656, 719, 1397
HapII	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	6 cut(s)	146, 661, 976, 1252, 1418, 1850
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	4 cut(s)	439, 1203, 1390, 1423
HindII	GTYRAC	4 cut(s)	439, 1203, 1390, 1423
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	3 cut(s)	400, 584, 1877
HpaI	GTTAAC	1 cut(s)	1203
HpaII	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
HphI	GGTGA	2 cut(s)	1638, 1919
Hpy166II	GTNNAC	9 cut(s)	202, 230, 439, 635, 649, 1203, 1390, 1423, 1783
Hpy188I	TCNGA	6 cut(s)	67, 121, 583, 589, 1941, 2014
Hpy188III	TCNNGA	8 cut(s)	1081, 1283, 1408, 1462, 1622, 1754, 1964, 2120
Hpy8I	GTNNAC	9 cut(s)	202, 230, 439, 635, 649, 1203, 1390, 1423, 1783
HpyAV	CCTTC	4 cut(s)	91, 994, 1268, 1373
HpyCH4III	ACNGT	4 cut(s)	871, 1266, 1549, 1898
HpyCH4IV	ACGT	4 cut(s)	325, 815, 1032, 2019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	968, 2082
HpyF3I	CTNAG	4 cut(s)	181, 241, 1087, 1812
HpySE526I	ACGT	4 cut(s)	325, 815, 1032, 2019
Hsp92II	CATG	6 cut(s)	146, 661, 976, 1252, 1418, 1850
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	2119
Ksp22I	TGATCA	2 cut(s)	1285, 1464
KspAI	GTTAAC	1 cut(s)	1203
Kzo9I	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	1600
Lsp1109I	GCAGC	1 cut(s)	2125
LweI	GCATC	4 cut(s)	901, 1063, 1173, 1358
MaeI	CTAG	4 cut(s)	332, 1608, 1724, 1818
MaeII	ACGT	4 cut(s)	325, 815, 1032, 2019
MaeIII	GTNAC	4 cut(s)	601, 811, 865, 1021
MalI	GATC	5 cut(s)	108, 1085, 1287, 1361, 1466
MboI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
MboII	GAAGA	4 cut(s)	25, 483, 1846, 1928
MfeI	CAATTG	2 cut(s)	80, 447
MflI	RGATCY	2 cut(s)	106, 1083
MhlI	GDGCHC	1 cut(s)	721
MmeI	TCCRAC	2 cut(s)	180, 561
Mph1103I	ATGCAT	1 cut(s)	1373
MroI	TCCGGA	1 cut(s)	2119
MslI	CAYNNNNRTG	4 cut(s)	872, 977, 1568, 1579
MspI	CCGG	5 cut(s)	104, 170, 345, 1786, 2120
MspR9I	CCNGG	5 cut(s)	104, 171, 345, 346, 489
MunI	CAATTG	2 cut(s)	80, 447
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	968, 2082
NciI	CCSGG	4 cut(s)	104, 171, 345, 346
NcoI	CCATGG	2 cut(s)	657, 972
NdeII	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
NlaIII	CATG	6 cut(s)	146, 661, 976, 1252, 1418, 1850
NlaIV	GGNNCC	4 cut(s)	102, 108, 718, 719
NmuCI	GTSAC	1 cut(s)	865
NsiI	ATGCAT	1 cut(s)	1373
NspI	RCATGY	2 cut(s)	1252, 1418
PciSI	GCTCTTC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	400, 584, 1877
PinAI	ACCGGT	1 cut(s)	1785
PkrI	GCNGC	1 cut(s)	2140
Ppu21I	YACGTR	2 cut(s)	326, 816
PpuMI	RGGWCCY	1 cut(s)	100
PshBI	ATTAAT	2 cut(s)	621, 831
PsiI	TTATAA	4 cut(s)	504, 515, 725, 1350
Psp1406I	AACGTT	1 cut(s)	1032
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	4 cut(s)	102, 108, 718, 719
PspOMI	GGGCCC	1 cut(s)	717
PspPI	GGNCC	3 cut(s)	100, 717, 718
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	106, 1083
RsaI	GTAC	2 cut(s)	1006, 1345
RsaNI	GTAC	2 cut(s)	1005, 1344
RseI	CAYNNNNRTG	4 cut(s)	872, 977, 1568, 1579
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	2139
Sau3AI	GATC	5 cut(s)	106, 1083, 1285, 1359, 1464
Sau96I	GGNCC	3 cut(s)	100, 717, 718
ScrFI	CCNGG	5 cut(s)	104, 171, 345, 346, 489
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	4 cut(s)	901, 1063, 1173, 1358
SfcI	CTRYAG	1 cut(s)	1894
SinI	GGWCC	1 cut(s)	100
SmaI	CCCGGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	4 cut(s)	872, 977, 1568, 1579
SnaBI	TACGTA	1 cut(s)	816
SsiI	CCGC	2 cut(s)	4, 160
SspMI	CTAG	4 cut(s)	332, 1608, 1724, 1818
StyD4I	CCNGG	5 cut(s)	102, 169, 343, 344, 487
StyI	CCWWGG	3 cut(s)	261, 657, 972
TaaI	ACNGT	4 cut(s)	871, 1266, 1549, 1898
TaiI	ACGT	4 cut(s)	328, 818, 1035, 2022
TaqI	TCGA	3 cut(s)	1362, 1875, 2063
TatI	WGTACW	1 cut(s)	1343
TfiI	GAWTC	3 cut(s)	400, 584, 1877
TscAI	CASTG	3 cut(s)	48, 558, 874
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	1 cut(s)	2138
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	6 cut(s)	128, 297, 413, 1112, 1925, 2114
TspGWI	ACGGA	2 cut(s)	485, 1695
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	3 cut(s)	48, 558, 874
VpaK11BI	GGWCC	1 cut(s)	100
VspI	ATTAAT	2 cut(s)	621, 831
XapI	RAATTY	4 cut(s)	114, 335, 1403, 2111
XceI	RCATGY	2 cut(s)	1252, 1418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmaI	CCCGGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	4 cut(s)	332, 1608, 1724, 1818
Zsp2I	ATGCAT	1 cut(s)	1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.