Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Forward (+)

51694663 .. 51696799

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGACATTCGCTAATATGACTTTCCCTTTCTACGTTTACTTGCAGCTCTTCTCCTCACTGCCATCTATTACTTCTCTCTCGAATACACTCTCAAGGTCGAAAAATTATGAACTAGCATTCTCAGTTTATACTAAGATGACCAAGGTTGGTATTTTTACAAGCTTTGTATCATTGAGTTGTTTGGTTTCATATTTTATCAATATCCGTAAGCCCGAATTTGCACATGGGGTTTACTGCTTGGTATTAAAGCGTGGATTTCAGTTAAATGAGTGTGTTATGAATCTTGCATTAAAGGGGTTTTGTTTGAATGATGAAGTTGACAAGGCAATCGATTTGTTTAGAGTAATGGGAAGACATTTTGTAACGCCTGGCATTCGTAGTTATAACATTCTTATAGATGGACTTTGCAAAGCAAAAAAGTTGAAAGAAGCAGTGGAATTGTTGGTTGATATGGAGGTGTCAGATTCTGAACCGAATGTGGGTAGAATGGACGAGGCCATGGGTTTCTTGGAGGAAATGAGGCAGAAGGGTTTGGAAATAGATGTTTTCAGGAAAAAACTGTTCGATGAGATGTTAAACAAGGGTATTTCTCCTAATGTGGTGTACATATACCATGGGGATGTTCACTTAATGCTCATGAAGGGTAAAGAGCCTAATAATGTAACATACAACGTTATGATTGATGGACTATGCAAGGAGGGGTTGATGGATGATGCTTTAAAGATCTTAGAAATGATGAAAGGGAAAGGTGTAAAGCCTGATGTAATACTTACAACAACATTACTAATGGGACTATTCTGTGATGGGAAGGTTGATGAGGCAATGAAACTTTTCAGTAAGATAACAAACGATGAGAACTTTGTCGAGCCAGATGTTATCACATATAACATGGTCATTTGGGACTTGGACTTGGGAGTTATTCCTAATTCAATCACTTACGGTGTCATGATCAATGGATTTTGCAAAAATCAAATGTTCAGGGTTGCAAAAGGACTTTTTACTAAAATGAGAGCTTCTGGGATTAGTCCTACTGTAAATGACTACAACGCTTTGATGTCATCGTTGTGCAAGGAGGGTAGTTTGGGGCAAGCTAGGATGTTGTTTCAAGAAATGAGAACGGCAAATTATTTGCCTAGTGTTGTCTCATTTAATACTATAATTAATGGAATTCTAAAAGCTGGAGATGTTAAATCTGCTAAAGAGTTGCTAGAAGACATGTTCAATTGGTTAAAAGGTGAAACAGAAGAAATTGTTAACTTGCTTCATCAGATGGCAGACAAGGGTGTTATTCTTGACAAAGAAATAACTTCTACCATCTTGGCGTGCCTCTGTCAAATCTCTGACGATGTTGATGTGATGGAGGTTCTCCCAACTTTTTCCAAAGAGACATCAAAAGGAATAAGCAGTACCTGCAATGAGCTATTGATGAAAGTCAATAAATCTTTCCCGGAACTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

486

Amino Acids

54.67

Weight (kDa)

5.64

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 137	1.2e-09	PPR repeat family
PPR_1	PF12854	122 - 152	9.5e-10	PPR repeat
PPR_2	PF13041	123 - 160	6.7e-08	PPR repeat family
PPR	PF01535	127 - 153	9.8e-07	PPR repeat
PPR_1	PF12854	214 - 247	6.3e-13	PPR repeat
PPR_2	PF13041	218 - 256	9.9e-13	PPR repeat family
PPR	PF01535	221 - 251	1.7e-10	PPR repeat
PPR_3	PF13812	241 - 299	8.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	249 - 280	2.2e-06	PPR repeat
PPR_2	PF13041	253 - 299	2.2e-06	PPR repeat family
PPR_1	PF12854	305 - 337	3.5e-07	PPR repeat
PPR_2	PF13041	308 - 345	1.5e-07	PPR repeat family
PPR	PF01535	311 - 341	6.5e-06	PPR repeat
PPR_1	PF12854	340 - 372	3.3e-07	PPR repeat
PPR_1	PF12854	376 - 406	8.8e-07	PPR repeat
PPR_2	PF13041	378 - 409	1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
Acc36I	ACCTGC	1 cut(s)	1418
AclI	AACGTT	1 cut(s)	672
AcsI	RAATTY	2 cut(s)	215, 1167
AfaI	GTAC	2 cut(s)	605, 1408
AfiI	CCNNNNNNNGG	1 cut(s)	479
AflII	CTTAAG	1 cut(s)	1454
AflIII	ACRYGT	1 cut(s)	1215
AgsI	TTSAA	5 cut(s)	307, 424, 930, 1106, 1222
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	6 cut(s)	46, 162, 1013, 1091, 1178, 1420
AluI	AGCT	6 cut(s)	46, 162, 1013, 1091, 1178, 1420
Alw26I	GTCTC	2 cut(s)	1147, 1379
AlwNI	CAGNNNCTG	2 cut(s)	467, 1410
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	2 cut(s)	215, 1167
AseI	ATTAAT	1 cut(s)	1161
Asp700I	GAANNNNTTC	1 cut(s)	830
AsuC2I	CCSGG	1 cut(s)	1448
AsuHPI	GGTGA	1 cut(s)	1247
BbsI	GAAGAC	2 cut(s)	358, 1218
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	8 cut(s)	70, 392, 677, 700, 797, 1264, 1322, 1351
BceAI	ACGGC	1 cut(s)	1134
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	948
BcnI	CCSGG	1 cut(s)	1448
BcoDI	GTCTC	2 cut(s)	1147, 1379
BfaI	CTAG	4 cut(s)	113, 1092, 1134, 1208
BfrI	CTTAAG	1 cut(s)	1454
BfuAI	ACCTGC	1 cut(s)	1418
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	2 cut(s)	369, 1448
BmrFI	CCNGG	2 cut(s)	369, 1448
BmsI	GCATC	1 cut(s)	703
BpiI	GAAGAC	2 cut(s)	358, 1218
BpmI	CTGGAG	1 cut(s)	1200
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	1448
Bsa29I	ATCGAT	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	141, 498, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse3DI	GCAATG	2 cut(s)	828, 1420
BseBI	CCWGG	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	141, 498, 613
BseGI	GGATG	3 cut(s)	625, 715, 1101
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	2 cut(s)	828, 1420
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	497
BshVI	ATCGAT	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	1448
BslFI	GGGAC	2 cut(s)	804, 914
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	1147, 1379
BsmFI	GGGAC	2 cut(s)	804, 914
BsmI	GAATGC	2 cut(s)	116, 372
BsnI	GGCC	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	723, 948
Bsp19I	CCATGG	2 cut(s)	498, 613
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	134
BspDI	ATCGAT	1 cut(s)	330
BspHI	TCATGA	2 cut(s)	636, 945
BspMI	ACCTGC	1 cut(s)	1418
BspQI	GCTCTTC	1 cut(s)	53
BspTI	CTTAAG	1 cut(s)	1454
BsrDI	GCAATG	2 cut(s)	828, 1420
BsrGI	TGTACA	1 cut(s)	603
BssECI	CCNNGG	3 cut(s)	141, 498, 613
BssMI	GATC	2 cut(s)	723, 948
BssT1I	CCWWGG	3 cut(s)	141, 498, 613
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	561, 941, 1033
Bst6I	CTCTTC	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	1454
BstAPI	GCANNNNNTGC	1 cut(s)	1410
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	1089, 1324
BstDEI	CTNAG	3 cut(s)	121, 132, 727
BstDSI	CCRYGG	2 cut(s)	498, 613
BstF5I	GGATG	3 cut(s)	625, 715, 1101
BstKTI	GATC	2 cut(s)	726, 951
BstMAI	GTCTC	2 cut(s)	1147, 1379
BstMBI	GATC	2 cut(s)	723, 948
BstMWI	GCNNNNNNNGC	1 cut(s)	1410
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	1219
BstSCI	CCNGG	2 cut(s)	367, 1446
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	2 cut(s)	358, 1218
BstX2I	RGATCY	1 cut(s)	723
BstYI	RGATCY	1 cut(s)	723
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	497
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	2 cut(s)	498, 613
BtsCI	GGATG	3 cut(s)	625, 715, 1101
BtsI	GCAGTG	2 cut(s)	56, 438
BtsIMutI	CAGTG	2 cut(s)	56, 438
BveI	ACCTGC	1 cut(s)	1418
Cac8I	GCNNGC	2 cut(s)	1089, 1324
CaiI	CAGNNNCTG	2 cut(s)	467, 1410
CciI	TCATGA	2 cut(s)	636, 945
ClaI	ATCGAT	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	604, 1407
CviAII	CATG	7 cut(s)	224, 499, 614, 637, 889, 946, 1216
CviQI	GTAC	2 cut(s)	604, 1407
DdeI	CTNAG	3 cut(s)	121, 132, 727
DpnI	GATC	2 cut(s)	725, 950
DpnII	GATC	2 cut(s)	723, 948
DraI	TTTAAA	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	141, 498, 613
EcoRI	GAATTC	1 cut(s)	1167
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	3 cut(s)	141, 498, 613
ErhI	CCWWGG	3 cut(s)	141, 498, 613
FaeI	CATG	7 cut(s)	227, 502, 617, 640, 892, 949, 1219
FaqI	GGGAC	2 cut(s)	804, 914
FatI	CATG	7 cut(s)	223, 498, 613, 636, 888, 945, 1215
FbaI	TGATCA	1 cut(s)	948
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	3 cut(s)	632, 722, 1108
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	4 cut(s)	113, 1092, 1134, 1208
GluI	GCNGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	1200
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	1448
Hin1II	CATG	7 cut(s)	227, 502, 617, 640, 892, 949, 1219
HincII	GTYRAC	2 cut(s)	319, 1255
HindII	GTYRAC	2 cut(s)	319, 1255
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	2 cut(s)	280, 464
HpaI	GTTAAC	1 cut(s)	1255
HpaII	CCGG	1 cut(s)	1448
HphI	GGTGA	1 cut(s)	1247
Hpy166II	GTNNAC	6 cut(s)	37, 232, 319, 604, 625, 1255
Hpy188I	TCNGA	4 cut(s)	463, 469, 1269, 1342
Hpy188III	TCNNGA	6 cut(s)	79, 550, 637, 946, 1106, 1292
Hpy8I	GTNNAC	6 cut(s)	37, 232, 319, 604, 625, 1255
HpyAV	CCTTC	3 cut(s)	520, 634, 802
HpyCH4III	ACNGT	3 cut(s)	561, 941, 1033
HpyCH4IV	ACGT	2 cut(s)	33, 672
HpyCH4V	TGCA	9 cut(s)	43, 221, 287, 408, 693, 963, 986, 1068, 1413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1410
HpyF3I	CTNAG	3 cut(s)	121, 132, 727
HpySE526I	ACGT	2 cut(s)	33, 672
Hsp92II	CATG	7 cut(s)	227, 502, 617, 640, 892, 949, 1219
Ksp22I	TGATCA	1 cut(s)	948
KspAI	GTTAAC	1 cut(s)	1255
Kzo9I	GATC	2 cut(s)	723, 948
LguI	GCTCTTC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	354, 381, 535, 771, 882, 964, 1002, 1164, 1423
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	4 cut(s)	113, 1092, 1134, 1208
MaeII	ACGT	2 cut(s)	33, 672
MaeIII	GTNAC	2 cut(s)	361, 661
MalI	GATC	2 cut(s)	725, 950
MboI	GATC	2 cut(s)	723, 948
MboII	GAAGA	4 cut(s)	40, 363, 1223, 1256
MfeI	CAATTG	1 cut(s)	1222
MflI	RGATCY	1 cut(s)	723
MluCI	AATT	9 cut(s)	103, 215, 437, 925, 1123, 1158, 1167, 1222, 1248
MroXI	GAANNNNTTC	1 cut(s)	830
MslI	CAYNNNNRTG	2 cut(s)	618, 1063
MspCI	CTTAAG	1 cut(s)	1454
MspI	CCGG	1 cut(s)	1448
MspR9I	CCNGG	2 cut(s)	369, 1448
MunI	CAATTG	1 cut(s)	1222
Mva1269I	GAATGC	2 cut(s)	116, 372
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	1410
NciI	CCSGG	1 cut(s)	1448
NcoI	CCATGG	2 cut(s)	498, 613
NdeII	GATC	2 cut(s)	723, 948
NlaIII	CATG	7 cut(s)	227, 502, 617, 640, 892, 949, 1219
NspI	RCATGY	1 cut(s)	1219
PagI	TCATGA	2 cut(s)	636, 945
PciI	ACATGT	1 cut(s)	1215
PciSI	GCTCTTC	1 cut(s)	53
PctI	GAATGC	2 cut(s)	116, 372
PdmI	GAANNNNTTC	1 cut(s)	830
PfeI	GAWTC	2 cut(s)	280, 464
PfoI	TCCNGGA	1 cut(s)	1446
PkrI	GCNGC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	1215
PshBI	ATTAAT	1 cut(s)	1161
PsiI	TTATAA	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	467, 1410
PsuI	RGATCY	1 cut(s)	723
RsaI	GTAC	2 cut(s)	605, 1408
RsaNI	GTAC	2 cut(s)	604, 1407
RseI	CAYNNNNRTG	2 cut(s)	618, 1063
SapI	GCTCTTC	1 cut(s)	53
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	2 cut(s)	723, 948
ScrFI	CCNGG	2 cut(s)	369, 1448
SfaNI	GCATC	1 cut(s)	703
SmiMI	CAYNNNNRTG	2 cut(s)	618, 1063
SmlI	CTYRAG	2 cut(s)	91, 1454
SmoI	CTYRAG	2 cut(s)	91, 1454
Sse9I	AATT	9 cut(s)	103, 215, 437, 925, 1123, 1158, 1167, 1222, 1248
SspMI	CTAG	4 cut(s)	113, 1092, 1134, 1208
StyD4I	CCNGG	2 cut(s)	367, 1446
StyI	CCWWGG	3 cut(s)	141, 498, 613
TaaI	ACNGT	3 cut(s)	561, 941, 1033
TaiI	ACGT	2 cut(s)	36, 675
TaqI	TCGA	5 cut(s)	80, 98, 330, 564, 864
TasI	AATT	9 cut(s)	103, 215, 437, 925, 1123, 1158, 1167, 1222, 1248
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	280, 464
TscAI	CASTG	2 cut(s)	63, 438
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	9 cut(s)	123, 177, 293, 327, 653, 752, 839, 1253, 1442
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	63, 438
Vha464I	CTTAAG	1 cut(s)	1454
VspI	ATTAAT	1 cut(s)	1161
XapI	RAATTY	2 cut(s)	215, 1167
XceI	RCATGY	1 cut(s)	1219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	830
XspI	CTAG	4 cut(s)	113, 1092, 1134, 1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.