Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Forward (+)

55185343 .. 55190355

Gene Structure 5013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTGGTCATTACAGGCTTCCAAGACACGGCTCTTCTCCTCACTGCCATCTATTACTTCTCTCTCGAATGTAGAAACCCAAATGAGAGCTCTTTTGGAGGACCCAGATCCTAAAATTTCAGAGGCAATTTCGATTTTTCATCATGCCATACATTCCAACCGCTTGCCTTCAGGTTCAGCCGCAGCCTGCAATTTTCTCGTAGACACTCTCTCAAGGTCGAAAAATTATGAACTAGCATTCTCAGTTTATACTAAGATGACCAAGGCATCTCGAAACACGCTGAAAGGTGCAAAACAAAATTTGATAGAATTTTATTGGAAGTACTGTCATAAAGGAAGCATCTGTGCTTCAAGATATTCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

9.55

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	160, 180
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	3 cut(s)	114, 298, 308
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	351
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	3 cut(s)	114, 298, 308
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
BmcAI	AGTACT	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	2 cut(s)	275, 348
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	160, 180
BspCNI	CTCAG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	164, 187
BstDEI	CTNAG	2 cut(s)	241, 252
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	164, 187
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	5 cut(s)	17, 31, 89, 179, 185
CviKI_1	RGCY	5 cut(s)	17, 31, 89, 179, 185
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	241, 252
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	146
FaiI	YATR	5 cut(s)	144, 149, 228, 249, 330
FatI	CATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	180, 183
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	180, 183
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	2 cut(s)	180, 183
Hin1II	CATG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	64, 270, 351
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	189, 290
HpyF3I	CTNAG	2 cut(s)	241, 252
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	117, 156, 199
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	275, 348
MaeI	CTAG	1 cut(s)	233
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	6 cut(s)	114, 126, 190, 223, 298, 308
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	3 cut(s)	49, 91, 115
Mva1269I	GAATGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	181, 184
PpuMI	RGGWCCY	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	2 cut(s)	180, 183
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	91, 175, 218, 289
SfaNI	GCATC	2 cut(s)	275, 348
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	6 cut(s)	114, 126, 190, 223, 298, 308
SsiI	CCGC	2 cut(s)	160, 180
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	4 cut(s)	65, 131, 218, 271
TasI	AATT	6 cut(s)	114, 126, 190, 223, 298, 308
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	128, 243
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	3 cut(s)	114, 298, 308
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.