Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Forward (+)

13930342 .. 13933270

Gene Structure 2929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGAGATTTTGGACATCGGCGGCCGCCGCTGAGATTCTCCGACGTGATGAGCACGTAGTGAGAAAGCTCTTGAACCCTCGTGTGTACTCCAAACTCGTTAATGCATTCTCTGAAACTGAAACCAAATTGAGATCGCTATGTGAGGATTCAAATCCTCAGCTCAAGAATGCGGTTTCAGTTTTCCAACAAGCAGTCGACTCCGGTAGCTCTCTTGCTTTCGCCGGAAATAATCTCATGGCAAAGCTGGTACGCTCTAGAAACCACGAACTAGCATTTTCATTTTACCGCAAGATGCTTGAGACTGATACTTTCATCAATTTCGTGTCGCTGAGTGGGTTGCTTGAATGTTATGTGCAAATGCGTAAGACCGGGTTTGCGTTCGGGGTTCTCGCGTTGATGTTGAAGCGTGGGTTTGCTTTCAATGTGTACAATCACAATATCCTCTTAAAGGGTTTATGTAGGAATCTGGAATGTGGTAAAGCTGTTAGTTTACTGAGAGAAATGAGACGAAATTCTTTGATGCCTGATGTTTTTAGCTACAACACGGTTATTAGAGGCTTCTGCGAGGGAAAAGAGTTAGAGAAAGCATTGGAATTAGCTAATGAAATGAAAGGTAGTGGCTGTTCCTGGAGTTTGGTGACTTGGGGGATTCTGATAGATGCCTTTTGCAAGGCTGGTAAGATGGATGAGGCGATGGGCTTTCTTAAAGAAATGAAATTTATGGGTTTAGAGGCAGATCTTGTTGTGTATACTTCTCTGATTCGAGGGTTTTGTGATTGTGGTGAGTTAGATAGAGGGAAGGCGCTCTTTGATGAGGTTCTGGAAAGAGGAGATTCTCCCTGTGCGATTACATATAACACTCTAATTCGAGGTTTTTGCAAGTTAGGACAGTTGAAAGAAGCCTCAGAGATATTTGAGTTTATGATAGAGCGTGGAGTTCGTCCAAATGTTTACACGTACACGGGTCTAATCGATGGCCTTTGCGGAGTAGGTAAGACTAAGGAAGCCCTGCAACTTTTGAATCTGATGATAGAGAAGGATGAAGAACCGAATGCTGTGACTTATAACATTATTATTAACAAGCTGTGCAAGGATGGCCTTGTGGCGGATGCTGTAGAAATTGTTGAGTTAATGAAGAAGAGGCGTACAAGACCTGATAACATAACATACAATATTTTACTGGGAGGACTCTGTGCCAAAGGTGACCTAGACGAAGCAAGTAAGCTTCTCTATTTGATGCTGAAAGATAGTAGTTATACGGATCCAGATGTTATATCATATAATGCGTTAATCCACGGGCTGTGCAAGGAAAACCGTCTTCATCAAGCTTTAGATATTTATGATTTGCTGGTTGAGAAATTGGGTGCTGGAGATAGAGTAACCACTAATATATTGCTTAATAGCACTCTCAAGGCTGGAGATGTAAATAAGGCAATGGAACTTTGGAAACAAATATCTGATTCCAAAATTGTTCGAAATTCAGATACCTATACCGCTATGATTGATGGGTTTTGCAAAACTGGCATGCTTAATGTTGCTAAAGGATTGCTTTGCAAAATGAGAGTGTCTGAGCTACAGCCTAGTGTTTTTGACTACAACTGTCTATTGTCATCTTTATGCAAAGAGGGAAGCTTGGACCAGGCATGGAGATTATTTGAGGAAATGCAGCGTGATAACAATTTTCCCGACGTTGTTTCTTTCAATATTATGATTGATGGAAGTCTTAAAGCAGGGGATATTAAGTCTGCAGAGTCACTTCTTGTTGGGATGTCTCGTGCTGGTCTTTCCCCTGATTTATTTACTTATTCGAAGTTGATAAATAGGTTCCTGAAACTTGGATATTTAGACGAGGCTATCAGTTTCTTTGACAAAATGGTTGATAGCGGCTTTGAACCGGATGCTCATATTTGTGATTCTGTGTTGAAGTATTGTATTTCACAGGGAGAAACAGACAAGTTGACTGAACTTGTAAAAAAACTGGTGGATAAAGATATTGTCCTGGACAAAGAACTTACGTGTACGGTCATGGATTACATGTGTAACAGCTCAGCAAACATGGATCTTGCAAAGCGGTTGCTAAGAGTGACAGATGATAAAGAAGAAAGGGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

704

Amino Acids

79.11

Weight (kDa)

5.74

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	85 - 199	4.3e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	146 - 188	4e-11	PPR repeat family
PPR_3	PF13812	163 - 223	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	173 - 204	9.8e-09	PPR repeat
PPR_2	PF13041	175 - 224	9.2e-15	PPR repeat family
PPR	PF01535	178 - 208	1.5e-06	PPR repeat
PPR_1	PF12854	207 - 239	1.1e-10	PPR repeat
PPR_2	PF13041	212 - 259	1.1e-13	PPR repeat family
PPR	PF01535	213 - 242	6.5e-09	PPR repeat
PPR_3	PF13812	235 - 290	2.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	241 - 272	2.1e-07	PPR repeat
PPR_3	PF13812	269 - 320	2.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	280 - 328	3.3e-19	PPR repeat family
PPR_1	PF12854	282 - 308	1.5e-09	PPR repeat
PPR	PF01535	283 - 313	1.2e-09	PPR repeat
PPR_3	PF13812	304 - 360	2.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	311 - 343	4.8e-10	PPR repeat
PPR_2	PF13041	323 - 364	1.3e-11	PPR repeat family
PPR_1	PF12854	349 - 379	7.1e-11	PPR repeat
PPR_2	PF13041	350 - 398	8.4e-17	PPR repeat family
TPR_24	PF23276	371 - 485	4.4e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	385 - 410	1.4e-08	PPR repeat
PPR_1	PF12854	422 - 446	1.7e-08	PPR repeat
PPR_2	PF13041	422 - 450	6.6e-07	PPR repeat family
PPR_2	PF13041	458 - 506	2.5e-11	PPR repeat family
PPR_1	PF12854	491 - 521	7.3e-07	PPR repeat
PPR_2	PF13041	493 - 530	9.7e-06	PPR repeat family
TPR_24	PF23276	495 - 585	5.3e-08	Fungal tetratrico peptide repeats
PPR	PF01535	496 - 522	5.2e-06	PPR repeat
PPR_1	PF12854	525 - 556	2.5e-10	PPR repeat
PPR_2	PF13041	527 - 573	3.4e-15	PPR repeat family
PPR	PF01535	532 - 559	1.5e-06	PPR repeat
PPR_long	PF17177	545 - 677	3.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	550 - 608	6.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	562 - 610	1.1e-11	PPR repeat family
PPR_1	PF12854	594 - 626	7.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1065
AccI	GTMKAC	2 cut(s)	195, 749
AccII	CGCG	1 cut(s)	392
AclWI	GGATC	3 cut(s)	1256, 1269, 2067
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	3 cut(s)	511, 716, 1477
AdeI	CACNNNGTG	1 cut(s)	58
AfaI	GTAC	6 cut(s)	86, 249, 428, 959, 1147, 2020
AfiI	CCNNNNNNNGG	2 cut(s)	448, 1105
AflIII	ACRYGT	3 cut(s)	954, 2015, 2034
AjiI	CACGTC	1 cut(s)	44
AjnI	CCWGG	3 cut(s)	626, 1638, 1998
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	3 cut(s)	293, 499, 1776
AlwI	GGATC	3 cut(s)	1256, 1269, 2067
AoxI	GGCC	3 cut(s)	21, 976, 1096
ApeKI	GCWGC	1 cut(s)	1666
ApoI	RAATTY	3 cut(s)	511, 716, 1477
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	1 cut(s)	1636
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	3 cut(s)	649, 794, 1214
AsuII	TTCGAA	2 cut(s)	1474, 1808
AvaII	GGWCC	1 cut(s)	1636
BamHI	GGATCC	1 cut(s)	1261
BauI	CACGAG	2 cut(s)	78, 1773
BbsI	GAAGAC	1 cut(s)	1310
Bbv12I	GWGCWC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	1678
BccI	CCATC	6 cut(s)	676, 688, 968, 1088, 1499, 1709
BcgI	CGANNNNNNTGC	2 cut(s)	858, 892
BciT130I	CCWGG	3 cut(s)	628, 1640, 2000
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	293, 499, 1776
BfaI	CTAG	4 cut(s)	255, 269, 1208, 1581
BfmI	CTRYAG	3 cut(s)	1113, 1574, 1746
BfoI	RGCGCY	1 cut(s)	806
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	5 cut(s)	21, 24, 27, 1667, 1885
BlpI	GCTNAGC	1 cut(s)	2047
BlsI	GCNGC	5 cut(s)	22, 25, 28, 1668, 1886
Bme1390I	CCNGG	4 cut(s)	370, 628, 1640, 2000
Bme18I	GGWCC	1 cut(s)	1636
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	1636
BmiI	GGNNCC	2 cut(s)	1263, 1826
BmrFI	CCNGG	4 cut(s)	370, 628, 1640, 2000
BmrI	ACTGGG	1 cut(s)	1190
BmsI	GCATC	6 cut(s)	282, 510, 649, 1099, 1227, 1888
BmuI	ACTGGG	1 cut(s)	1190
BpiI	GAAGAC	1 cut(s)	1310
BpmI	CTGGAG	3 cut(s)	649, 1389, 1437
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	2047
Bpu14I	TTCGAA	2 cut(s)	1474, 1808
BpuEI	CTTGAG	3 cut(s)	146, 317, 1394
BpuMI	CCSGG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	972
BsaAI	YACGTR	3 cut(s)	55, 957, 2016
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	1294
BsaWI	WCCGGW	2 cut(s)	200, 1894
BsaXI	ACNNNNNCTCC	2 cut(s)	1362, 1392
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 1105
Bse1I	ACTGG	3 cut(s)	1185, 1525, 1983
Bse3DI	GCAATG	1 cut(s)	1440
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	628, 1640, 2000
BseCI	ATCGAT	1 cut(s)	972
BseDI	CCNNGG	1 cut(s)	1294
BseGI	GGATG	6 cut(s)	691, 1045, 1099, 1114, 1773, 1903
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	448, 1105
BseMI	GCAATG	1 cut(s)	1440
BseMII	CTCAG	7 cut(s)	21, 170, 320, 485, 918, 1560, 2061
BseNI	ACTGG	3 cut(s)	1185, 1525, 1983
BseRI	GAGGAG	1 cut(s)	843
BseX3I	CGGCCG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	1678
Bsh1236I	CGCG	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	23, 978, 1098
BshVI	ATCGAT	1 cut(s)	972
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	4 cut(s)	201, 222, 369, 1895
BslI	CCNNNNNNNGG	2 cut(s)	448, 1105
BsmAI	GTCTC	3 cut(s)	293, 499, 1776
BsmBI	CGTCTC	1 cut(s)	499
BsmI	GAATGC	3 cut(s)	104, 172, 1057
BsnI	GGCC	3 cut(s)	23, 978, 1098
Bsp119I	TTCGAA	2 cut(s)	1474, 1808
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	131, 736, 1261, 2059
Bsp1720I	GCTNAGC	1 cut(s)	2047
BspANI	GGCC	3 cut(s)	23, 978, 1098
BspCNI	CTCAG	7 cut(s)	22, 169, 321, 486, 917, 1561, 2060
BspDI	ATCGAT	1 cut(s)	972
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	1263, 1826
BspMAI	CTGCAG	1 cut(s)	1750
BspPI	GGATC	3 cut(s)	1256, 1269, 2067
BspT104I	TTCGAA	2 cut(s)	1474, 1808
BsrDI	GCAATG	1 cut(s)	1440
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	1185, 1525, 1983
BssECI	CCNNGG	1 cut(s)	1294
BssMI	GATC	4 cut(s)	131, 736, 1261, 2059
BssNAI	GTATAC	1 cut(s)	750
BssSI	CACGAG	2 cut(s)	78, 1773
Bst1107I	GTATAC	1 cut(s)	750
Bst2BI	CACGAG	2 cut(s)	78, 1773
Bst2UI	CCWGG	3 cut(s)	628, 1640, 2000
Bst4CI	ACNGT	5 cut(s)	547, 891, 1316, 1601, 2023
Bst6I	CTCTTC	1 cut(s)	1133
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	3 cut(s)	55, 957, 2016
BstBI	TTCGAA	2 cut(s)	1474, 1808
BstC8I	GCNNGC	1 cut(s)	1526
BstDEI	CTNAG	9 cut(s)	30, 156, 329, 494, 904, 999, 1569, 2047, 2078
BstDSI	CCRYGG	1 cut(s)	1294
BstEII	GGTNACC	1 cut(s)	1202
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	6 cut(s)	691, 1045, 1099, 1114, 1773, 1903
BstFNI	CGCG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	4 cut(s)	134, 739, 1264, 2062
BstMAI	GTCTC	3 cut(s)	293, 499, 1776
BstMBI	GATC	4 cut(s)	131, 736, 1261, 2059
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 1095, 1521
BstNI	CCWGG	3 cut(s)	628, 1640, 2000
BstNSI	RCATGY	2 cut(s)	1528, 2038
BstPI	GGTNACC	1 cut(s)	1202
BstSCI	CCNGG	4 cut(s)	368, 626, 1638, 1998
BstSFI	CTRYAG	3 cut(s)	1113, 1574, 1746
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	1678
BstV2I	GAAGAC	1 cut(s)	1310
BstX2I	RGATCY	3 cut(s)	736, 1261, 2059
BstYI	RGATCY	3 cut(s)	736, 1261, 2059
BstZ17I	GTATAC	1 cut(s)	750
BstZI	CGGCCG	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	972
BsuRI	GGCC	3 cut(s)	23, 978, 1098
BsuTUI	ATCGAT	1 cut(s)	972
BtgI	CCRYGG	1 cut(s)	1294
BtgZI	GCGATG	1 cut(s)	707
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	6 cut(s)	691, 1045, 1099, 1114, 1773, 1903
Cac8I	GCNNGC	1 cut(s)	1526
CciNI	GCGGCCGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	1636
ClaI	ATCGAT	1 cut(s)	972
Csp6I	GTAC	6 cut(s)	85, 248, 427, 958, 1146, 2019
CviAII	CATG	6 cut(s)	235, 1525, 1644, 2026, 2035, 2056
CviQI	GTAC	6 cut(s)	85, 248, 427, 958, 1146, 2019
DdeI	CTNAG	9 cut(s)	30, 156, 329, 494, 904, 999, 1569, 2047, 2078
DpnI	GATC	4 cut(s)	133, 738, 1263, 2061
DpnII	GATC	4 cut(s)	131, 736, 1261, 2059
DraIII	CACNNNGTG	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	21
EagI	CGGCCG	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	1133
EarI	CTCTTC	1 cut(s)	1133
EciI	GGCGGA	1 cut(s)	1121
EclXI	CGGCCG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	1636
Eco52I	CGGCCG	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	1202
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO65I	GGTNACC	1 cut(s)	1202
EcoRII	CCWGG	3 cut(s)	626, 1638, 1998
EcoT22I	ATGCAT	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	6 cut(s)	238, 1528, 1647, 2029, 2038, 2059
FalI	AAGNNNNNCTT	4 cut(s)	791, 823, 1533, 1565
FatI	CATG	6 cut(s)	234, 1524, 1643, 2025, 2034, 2055
FblI	GTMKAC	2 cut(s)	195, 749
Fnu4HI	GCNGC	5 cut(s)	21, 24, 27, 1667, 1885
FokI	GGATG	6 cut(s)	698, 1052, 1106, 1121, 1780, 1910
Fsp4HI	GCNGC	5 cut(s)	21, 24, 27, 1667, 1885
FspBI	CTAG	4 cut(s)	255, 269, 1208, 1581
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	5 cut(s)	21, 24, 27, 1667, 1885
GsuI	CTGGAG	3 cut(s)	649, 1389, 1437
HaeII	RGCGCY	1 cut(s)	806
HaeIII	GGCC	3 cut(s)	23, 978, 1098
HapII	CCGG	4 cut(s)	201, 222, 369, 1895
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	6 cut(s)	238, 1528, 1647, 2029, 2038, 2059
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HincII	GTYRAC	2 cut(s)	196, 1959
HindII	GTYRAC	2 cut(s)	196, 1959
HindIII	AAGCTT	3 cut(s)	1223, 1326, 1630
HpaII	CCGG	4 cut(s)	201, 222, 369, 1895
HphI	GGTGA	3 cut(s)	649, 794, 1214
Hpy166II	GTNNAC	9 cut(s)	85, 196, 427, 491, 750, 952, 960, 1959, 2019
Hpy188I	TCNGA	9 cut(s)	41, 112, 654, 759, 907, 1026, 1459, 1483, 1570
Hpy188III	TCNNGA	8 cut(s)	70, 163, 255, 467, 821, 1265, 1685, 1828
Hpy8I	GTNNAC	9 cut(s)	85, 196, 427, 491, 750, 952, 960, 1959, 2019
Hpy99I	CGWCG	2 cut(s)	45, 1691
HpyAV	CCTTC	2 cut(s)	793, 1030
HpyCH4III	ACNGT	5 cut(s)	547, 891, 1316, 1601, 2023
HpyCH4IV	ACGT	5 cut(s)	43, 54, 956, 1689, 2015
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 1095, 1521
HpyF3I	CTNAG	9 cut(s)	30, 156, 329, 494, 904, 999, 1569, 2047, 2078
HpySE526I	ACGT	5 cut(s)	43, 54, 956, 1689, 2015
Hsp92II	CATG	6 cut(s)	238, 1528, 1647, 2029, 2038, 2059
HspAI	GCGC	1 cut(s)	803
Kzo9I	GATC	4 cut(s)	131, 736, 1261, 2059
Lsp1109I	GCAGC	1 cut(s)	1678
LweI	GCATC	6 cut(s)	282, 510, 649, 1099, 1227, 1888
MaeI	CTAG	4 cut(s)	255, 269, 1208, 1581
MaeII	ACGT	5 cut(s)	43, 54, 956, 1689, 2015
MaeIII	GTNAC	7 cut(s)	637, 1057, 1202, 1378, 1752, 2039, 2083
MalI	GATC	4 cut(s)	133, 738, 1263, 2061
MboI	GATC	4 cut(s)	131, 736, 1261, 2059
MboII	GAAGA	5 cut(s)	1055, 1147, 1150, 1310, 2111
MflI	RGATCY	3 cut(s)	736, 1261, 2059
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	191, 1182, 1760
MmeI	TCCRAC	2 cut(s)	64, 208
Mph1103I	ATGCAT	1 cut(s)	106
MslI	CAYNNNNRTG	2 cut(s)	1615, 1908
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	4 cut(s)	201, 222, 369, 1895
MspR9I	CCNGG	4 cut(s)	370, 628, 1640, 2000
Mva1269I	GAATGC	3 cut(s)	104, 172, 1057
MvaI	CCWGG	3 cut(s)	628, 1640, 2000
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	26, 1095, 1521
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	4 cut(s)	131, 736, 1261, 2059
NlaIII	CATG	6 cut(s)	238, 1528, 1647, 2029, 2038, 2059
NlaIV	GGNNCC	2 cut(s)	1263, 1826
NmuCI	GTSAC	5 cut(s)	637, 1057, 1202, 1752, 2083
NotI	GCGGCCGC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	2 cut(s)	1528, 2038
NspV	TTCGAA	2 cut(s)	1474, 1808
PaeI	GCATGC	1 cut(s)	1528
PciI	ACATGT	1 cut(s)	2034
PctI	GAATGC	3 cut(s)	104, 172, 1057
PfeI	GAWTC	9 cut(s)	34, 146, 463, 649, 760, 833, 1021, 1460, 1913
PfoI	TCCNGGA	2 cut(s)	626, 1998
PkrI	GCNGC	5 cut(s)	22, 25, 28, 1668, 1886
PleI	GAGTC	3 cut(s)	191, 1182, 1759
PpsI	GAGTC	3 cut(s)	191, 1182, 1759
Ppu21I	YACGTR	3 cut(s)	55, 957, 2016
PscI	ACATGT	1 cut(s)	2034
PsiI	TTATAA	1 cut(s)	1065
Psp6I	CCWGG	3 cut(s)	626, 1638, 1998
PspEI	GGTNACC	1 cut(s)	1202
PspGI	CCWGG	3 cut(s)	626, 1638, 1998
PspN4I	GGNNCC	2 cut(s)	1263, 1826
PspPI	GGNCC	1 cut(s)	1636
PsrI	GAACNNNNNNTAC	2 cut(s)	607, 639
PstI	CTGCAG	1 cut(s)	1750
PsuI	RGATCY	3 cut(s)	736, 1261, 2059
RsaI	GTAC	6 cut(s)	86, 249, 428, 959, 1147, 2020
RsaNI	GTAC	6 cut(s)	85, 248, 427, 958, 1146, 2019
RseI	CAYNNNNRTG	2 cut(s)	1615, 1908
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	5 cut(s)	21, 24, 27, 1667, 1885
Sau3AI	GATC	4 cut(s)	131, 736, 1261, 2059
Sau96I	GGNCC	1 cut(s)	1636
SchI	GAGTC	3 cut(s)	191, 1182, 1760
ScrFI	CCNGG	4 cut(s)	370, 628, 1640, 2000
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	6 cut(s)	282, 510, 649, 1099, 1227, 1888
SfcI	CTRYAG	3 cut(s)	1113, 1574, 1746
SfuI	TTCGAA	2 cut(s)	1474, 1808
SinI	GGWCC	1 cut(s)	1636
SmiMI	CAYNNNNRTG	2 cut(s)	1615, 1908
SmlI	CTYRAG	3 cut(s)	161, 296, 1409
SmoI	CTYRAG	3 cut(s)	161, 296, 1409
SphI	GCATGC	1 cut(s)	1528
SspI	AATATT	2 cut(s)	1174, 1705
SspMI	CTAG	4 cut(s)	255, 269, 1208, 1581
StyD4I	CCNGG	4 cut(s)	368, 626, 1638, 1998
TaaI	ACNGT	5 cut(s)	547, 891, 1316, 1601, 2023
TaiI	ACGT	5 cut(s)	46, 57, 959, 1692, 2018
TaqI	TCGA	6 cut(s)	195, 763, 868, 972, 1474, 1808
TatI	WGTACW	2 cut(s)	84, 426
TauI	GCSGC	4 cut(s)	23, 26, 29, 1887
TfiI	GAWTC	9 cut(s)	34, 146, 463, 649, 760, 833, 1021, 1460, 1913
TseFI	GTSAC	5 cut(s)	637, 1057, 1202, 1752, 2083
TseI	GCWGC	1 cut(s)	1666
Tsp45I	GTSAC	5 cut(s)	637, 1057, 1202, 1752, 2083
TspDTI	ATGAA	8 cut(s)	267, 301, 618, 623, 728, 1056, 1148, 1310
TspGWI	ACGGA	1 cut(s)	1274
VpaK11BI	GGWCC	1 cut(s)	1636
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	3 cut(s)	511, 716, 1477
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	2 cut(s)	1528, 2038
XmiI	GTMKAC	2 cut(s)	195, 749
XspI	CTAG	4 cut(s)	255, 269, 1208, 1581
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.