Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Reverse (-)

15270810 .. 15271507

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACGTTCCCTTTCTACGTTTACTTGCAGCTCTTCTCCTCACTGCCATCTATTACTTCTCTCTCGAATGTAGAAACCCAATTGAGAGCTCTTTTGGAGGACCCAGATCCTAAAATTTCAGAGGCAATTTCAATTTTTCATCATGCCATACATTCCATCCGCTTGCCTTCAGGTTCAGCCGCAGCCTGCAATTTTCTCGTAGACACTCTCTCAAGGTCGAAAAATTATGAACTAGCATTCTCAGTTTATACTAAGATGACCAAGCGTGGATTTCAGTTAAATGAGTGTGTTATGAATCTTGCATTAAAGGGTTTTTGTTCGAATGATGAAGTTGACAAGGCAATCGAGTTGTTTAGAGGTGGAATGGACGAGGCCATGGGTTTCTTGGAGGAAATGAGGCAAAAGGGTTTGGAAATAGCAAAGAGTCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

5.59

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	61 - 106	3.6e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	160, 180
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	132
AluBI	AGCT	2 cut(s)	31, 89
AluI	AGCT	2 cut(s)	31, 89
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	28, 182
ApoI	RAATTY	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	40, 194
BccI	CCATC	2 cut(s)	55, 164
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	3 cut(s)	29, 180, 183
BlsI	GCNGC	3 cut(s)	30, 181, 184
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	40, 194
BshFI	GGCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	106
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	160, 180
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	164, 187
BstDEI	CTNAG	2 cut(s)	241, 252
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	40, 194
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	164, 187
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	3 cut(s)	143, 376, 432
CviJI	RGCY	5 cut(s)	31, 89, 179, 185, 374
CviKI_1	RGCY	5 cut(s)	31, 89, 179, 185, 374
DdeI	CTNAG	2 cut(s)	241, 252
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	146, 379, 435
FaiI	YATR	7 cut(s)	144, 149, 228, 249, 293, 377, 433
FatI	CATG	3 cut(s)	142, 375, 431
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	29, 180, 183
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	3 cut(s)	29, 180, 183
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	3 cut(s)	29, 180, 183
HaeIII	GGCC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	146, 379, 435
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	295, 424
Hpy166II	GTNNAC	3 cut(s)	22, 202, 334
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	3 cut(s)	22, 202, 334
HpyAV	CCTTC	1 cut(s)	177
HpyCH4IV	ACGT	2 cut(s)	5, 18
HpyCH4V	TGCA	3 cut(s)	28, 189, 302
HpyF3I	CTNAG	2 cut(s)	241, 252
HpySE526I	ACGT	2 cut(s)	5, 18
Hsp92II	CATG	3 cut(s)	146, 379, 435
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	117, 156, 199
Lsp1109I	GCAGC	2 cut(s)	40, 194
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	2 cut(s)	5, 18
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	25, 419
MfeI	CAATTG	1 cut(s)	80
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	6 cut(s)	80, 114, 126, 132, 190, 223
MlyI	GAGTC	1 cut(s)	433
MnlI	CCTC	7 cut(s)	49, 91, 115, 350, 364, 382, 390
MseI	TTAA	2 cut(s)	278, 305
MunI	CAATTG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	146, 379, 435
NlaIV	GGNNCC	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	30, 181, 184
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	278, 305
SatI	GCNGC	3 cut(s)	29, 180, 183
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	7 cut(s)	8, 21, 33, 91, 175, 218, 361
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	6 cut(s)	80, 114, 126, 132, 190, 223
SsiI	CCGC	2 cut(s)	160, 180
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	375
TaiI	ACGT	2 cut(s)	8, 21
TaqI	TCGA	4 cut(s)	65, 218, 320, 345
TasI	AATT	6 cut(s)	80, 114, 126, 132, 190, 223
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	278, 305
Tru9I	TTAA	2 cut(s)	278, 305
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	2 cut(s)	28, 182
TspDTI	ATGAA	4 cut(s)	128, 243, 308, 342
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.