Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 11 - 128 | 8.6e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 16 - 74 | 2.9e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 25 - 55 | 3.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 27 - 76 | 4.1e-14 | PPR repeat family |
| PPR | PF01535 | 30 - 60 | 5.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 59 - 90 | 1e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 521 |
| AcsI | RAATTY | 1 cut(s) | 114 |
| AgeI | ACCGGT | 1 cut(s) | 216 |
| AgsI | TTSAA | 5 cut(s) | 53, 169, 225, 287, 333 |
| AluBI | AGCT | 3 cut(s) | 38, 125, 523 |
| AluI | AGCT | 3 cut(s) | 38, 125, 523 |
| Alw26I | GTCTC | 1 cut(s) | 94 |
| ApoI | RAATTY | 1 cut(s) | 114 |
| AsiGI | ACCGGT | 1 cut(s) | 216 |
| AsuHPI | GGTGA | 1 cut(s) | 350 |
| BanII | GRGCYC | 1 cut(s) | 237 |
| BccI | CCATC | 3 cut(s) | 367, 425, 454 |
| BclI | TGATCA | 1 cut(s) | 528 |
| BcoDI | GTCTC | 1 cut(s) | 94 |
| BfaI | CTAG | 4 cut(s) | 39, 81, 155, 249 |
| BfmI | CTRYAG | 1 cut(s) | 325 |
| BfuAI | ACCTGC | 1 cut(s) | 521 |
| BpmI | CTGGAG | 1 cut(s) | 147 |
| BsaWI | WCCGGW | 1 cut(s) | 216 |
| Bse118I | RCCGGY | 1 cut(s) | 216 |
| Bse3DI | GCAATG | 1 cut(s) | 523 |
| BseGI | GGATG | 2 cut(s) | 247, 391 |
| BseMI | GCAATG | 1 cut(s) | 523 |
| BshTI | ACCGGT | 1 cut(s) | 216 |
| BsiSI | CCGG | 1 cut(s) | 217 |
| BsmAI | GTCTC | 1 cut(s) | 94 |
| Bsp1286I | GDGCHC | 1 cut(s) | 237 |
| Bsp143I | GATC | 1 cut(s) | 528 |
| BspMI | ACCTGC | 1 cut(s) | 521 |
| BsrDI | GCAATG | 1 cut(s) | 523 |
| BsrFI | RCCGGY | 1 cut(s) | 216 |
| BssAI | RCCGGY | 1 cut(s) | 216 |
| BssMI | GATC | 1 cut(s) | 528 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 513 |
| BstC8I | GCNNGC | 2 cut(s) | 36, 427 |
| BstF5I | GGATG | 2 cut(s) | 247, 391 |
| BstKTI | GATC | 1 cut(s) | 531 |
| BstMAI | GTCTC | 1 cut(s) | 94 |
| BstMBI | GATC | 1 cut(s) | 528 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 513 |
| BstNSI | RCATGY | 1 cut(s) | 429 |
| BstSFI | CTRYAG | 1 cut(s) | 325 |
| BtsCI | GGATG | 2 cut(s) | 247, 391 |
| BveI | ACCTGC | 1 cut(s) | 521 |
| Cac8I | GCNNGC | 2 cut(s) | 36, 427 |
| Cfr10I | RCCGGY | 1 cut(s) | 216 |
| CspAI | ACCGGT | 1 cut(s) | 216 |
| CviAII | CATG | 2 cut(s) | 103, 426 |
| CviJI | RGCY | 6 cut(s) | 38, 125, 235, 248, 324, 523 |
| CviKI_1 | RGCY | 6 cut(s) | 38, 125, 235, 248, 324, 523 |
| DpnI | GATC | 1 cut(s) | 530 |
| DpnII | GATC | 1 cut(s) | 528 |
| Eco24I | GRGCYC | 1 cut(s) | 237 |
| EcoRI | GAATTC | 1 cut(s) | 114 |
| EcoT38I | GRGCYC | 1 cut(s) | 237 |
| FaeI | CATG | 2 cut(s) | 106, 429 |
| FaiI | YATR | 5 cut(s) | 104, 164, 191, 327, 427 |
| FatI | CATG | 2 cut(s) | 102, 425 |
| FbaI | TGATCA | 1 cut(s) | 528 |
| FokI | GGATG | 2 cut(s) | 254, 398 |
| FriOI | GRGCYC | 1 cut(s) | 237 |
| FspBI | CTAG | 4 cut(s) | 39, 81, 155, 249 |
| GsuI | CTGGAG | 1 cut(s) | 147 |
| HapII | CCGG | 1 cut(s) | 217 |
| Hin1II | CATG | 2 cut(s) | 106, 429 |
| HinfI | GANTC | 2 cut(s) | 308, 534 |
| HpaII | CCGG | 1 cut(s) | 217 |
| HphI | GGTGA | 1 cut(s) | 350 |
| Hpy166II | GTNNAC | 1 cut(s) | 214 |
| Hpy188I | TCNGA | 3 cut(s) | 372, 445, 533 |
| Hpy188III | TCNNGA | 3 cut(s) | 53, 185, 395 |
| Hpy8I | GTNNAC | 1 cut(s) | 214 |
| HpyAV | CCTTC | 1 cut(s) | 208 |
| HpyCH4V | TGCA | 3 cut(s) | 15, 68, 516 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 513 |
| Hsp92II | CATG | 2 cut(s) | 106, 429 |
| Ksp22I | TGATCA | 1 cut(s) | 528 |
| Kzo9I | GATC | 1 cut(s) | 528 |
| LpnPI | CCDG | 5 cut(s) | 111, 198, 230, 303, 526 |
| MaeI | CTAG | 4 cut(s) | 39, 81, 155, 249 |
| MalI | GATC | 1 cut(s) | 530 |
| MboI | GATC | 1 cut(s) | 528 |
| MboII | GAAGA | 2 cut(s) | 277, 359 |
| MhlI | GDGCHC | 1 cut(s) | 237 |
| MluCI | AATT | 7 cut(s) | 56, 70, 114, 170, 192, 351, 358 |
| MlyI | GAGTC | 1 cut(s) | 543 |
| MnlI | CCTC | 5 cut(s) | 13, 151, 238, 440, 457 |
| MseI | TTAA | 5 cut(s) | 96, 135, 179, 357, 547 |
| MslI | CAYNNNNRTG | 1 cut(s) | 10 |
| MspI | CCGG | 1 cut(s) | 217 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 513 |
| NdeII | GATC | 1 cut(s) | 528 |
| NlaIII | CATG | 2 cut(s) | 106, 429 |
| NspI | RCATGY | 1 cut(s) | 429 |
| PaeI | GCATGC | 1 cut(s) | 429 |
| PfeI | GAWTC | 1 cut(s) | 308 |
| PinAI | ACCGGT | 1 cut(s) | 216 |
| PleI | GAGTC | 1 cut(s) | 542 |
| PpsI | GAGTC | 1 cut(s) | 542 |
| RseI | CAYNNNNRTG | 1 cut(s) | 10 |
| SaqAI | TTAA | 5 cut(s) | 96, 135, 179, 357, 547 |
| Sau3AI | GATC | 1 cut(s) | 528 |
| SchI | GAGTC | 1 cut(s) | 543 |
| SduI | GDGCHC | 1 cut(s) | 237 |
| SetI | ASST | 9 cut(s) | 40, 44, 127, 200, 292, 340, 468, 515, 525 |
| SfcI | CTRYAG | 1 cut(s) | 325 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 10 |
| SphI | GCATGC | 1 cut(s) | 429 |
| Sse9I | AATT | 7 cut(s) | 56, 70, 114, 170, 192, 351, 358 |
| SspMI | CTAG | 4 cut(s) | 39, 81, 155, 249 |
| TasI | AATT | 7 cut(s) | 56, 70, 114, 170, 192, 351, 358 |
| TfiI | GAWTC | 1 cut(s) | 308 |
| Tru1I | TTAA | 5 cut(s) | 96, 135, 179, 357, 547 |
| Tru9I | TTAA | 5 cut(s) | 96, 135, 179, 357, 547 |
| TspDTI | ATGAA | 1 cut(s) | 356 |
| TspGWI | ACGGA | 1 cut(s) | 126 |
| XapI | RAATTY | 1 cut(s) | 114 |
| XceI | RCATGY | 1 cut(s) | 429 |
| XspI | CTAG | 4 cut(s) | 39, 81, 155, 249 |