Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Forward (+)

47701729 .. 47704440

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGATGTGTTTATCATCTTTGACTTTGATACTGACATTTCATGCCTCAAAATGCAGTGGCATGCGGTCATTACAGGTTTCCAAGACACGGCTCTTCTCCTCACTGCCATCTATTACTCCCCTCTCTGATGTAGAAACCCAATTGAGAGCTTTTTGGAAGGACCCGGATCCTAAAATTTCGGACGCGCTTTCACTTTTTCATCATGCCATACATTCCAACCGCCTGCCTCCGGGGTCAGCCTCAGCCTGCAACTTCCTTGTAGACACTCTCGCAAGGTCAAAAAATTATGAACTATCATTCTCAGTTTATACCAAGATGACCAAGGTTGGTATTATTCCAAGCTTTATATCATTGAGTTGTTTAGTTTCATATTTTGTCAATACGCGTAAGCTAGAATTCTCACCCGGGGTTTTCGGCTTGGTATTAAAGCGTGGATTTCAGTTAAATGAGTATGTTATGAATCTTGCATTAAACGGTTTTTGTTCTAATGATGAGGTTGACAAGGCAATTGAGTTGTTTAGTGTAATGAGAAGACATTTTGTAAAGCCTGGTATTCGTAGTTATAACATTCTTATAAATGGACTTTGCAAAGCGAAAAAGTTGAAAGAAGCAGTGGAATTGTTGGTTGATATGGAGGTGTCGGATTCTGAACCGAATGTGGTAACATACAGCACATTGATTAATGGATTTTGTAAACAGGGTAGAGTGGATGAGGCCATGGGTTTCTTGGAGGAGATGAGGCAAAAGGGTTTGGAAATGGATGTTTTTGTATATGGGGCCCTTATAAGTGGTTTTTGTGCTAAAGGGAGTTTTGATAGAGGAAAACAACTTTTTGATGAGATGTTAAACAAGGGTATTTCTCCTAATGTGGTTACGTATAGTTGTTTGATTAATTATCTTTCAAAGACAGGTAAGTGGAAAGAAGTCACTGTGATGGTAAATGATATGACACAATGTGGAGTTCCCCCTGATGCTATTACTTACACAGGTATCCTTGATGGGCTTTTCAAAAATGGAATGTCTACAAAAGCCATGGCGATATTCAATTTAATGCTATTGAAGGGTACAGAGCCTAATAATGTAACATACAACGTTATGATTGATGGATTATGCAAGGAGGGGTTGGTGGATGATGCTTTAAAGATCTTAGAAATGATGAAAGGGAAAGGTGTAAAGCCTGATGTAATCACTTACAACACATTACTAATGGGACTATCTTGTGATGGGAAGGTTGATGAGATGATGCAACTTTTCAGTAAGATAACAAATGATGAGAACTTTGTTGAGCCAGATGTTATGACATATAACATGCTCATTTTGGGACTGTGCAAGGAAGGTAATCTTGATCAGGCTATGGAGATGTATCATACAATGGTTGAAAGGGGCATTTCTGGTAGCTTATGTACTTATAACACTTTGATCGACAGATGCATACAGGAAGGGTTAGTTGACAAGGCCATAGAATTCTGGAGACATGCAGTTGACTTGGGAGTTATACCTAACTCAATCACTTATGGTGTCTTGATCAATGGATTTTGCAAAAATCAAATGGTCAGGCTTGCAAAAGGACTTTTTAGTAAAATGAGAGCTTCTGGGATTAGTCCTACTGTAATTGACTACAACACTTTGATGTCATCGTTGTGCAAGGAGGGTAGTTTGGAGCAAGCTAGGATGTTGTTTCAAGAAATGAGAACTGCAAATCATTCACCTTGTGTTGTCTCATTTAATACCATAATTGACGGACTTCTTAAAGCTGGAGATATTAAATCTACTAAAGAGTTGCTAGAGGATATGTTCAAATTGGGTTTAATTCCTGATAGAATTACTTTCTCTACATTAGTGAACCGGTTTTCAAAACTTGGGCTATTGGCTGAGGCTAGAATGTGCGTTGAGAAGATGATTGCTCGTGGTATTGAACCTGATGTCTTTGTATTCGATTCTTTATTAAAGGGCTACAGTTCTAAAGGTGAAACAGAAGAAATTGTTAATTTGCTTCATCAGATGGCAGAAAAGGGTGTTGTTCTTGACAAAGATATCACTTCTACCATCTTGGCGTGCCTCTGTCAAATCTCTGATGATGTTGATGTGATGGAGGTTCTCCCTACTTTTTCCAAAGACATATCGAAAGGAATAAGCATTACCTGCAATGAGCTATTGATGAAAGTCAATAAATTTTATCCGGAACTAAAGTTATGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

734

Amino Acids

81.64

Weight (kDa)

6.1

Isoelectric Point (pI)

23.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	137 - 243	6.9e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	149 - 197	6.2e-12	PPR repeat family
PPR_3	PF13812	176 - 230	6.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	181 - 212	5.3e-10	PPR repeat
PPR_2	PF13041	183 - 232	4.5e-17	PPR repeat family
PPR	PF01535	187 - 213	1.3e-06	PPR repeat
PPR_1	PF12854	217 - 247	2.7e-16	PPR repeat
PPR_2	PF13041	218 - 266	5.3e-17	PPR repeat family
PPR	PF01535	221 - 251	2.8e-10	PPR repeat
PPR_3	PF13812	243 - 300	1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	249 - 281	3.5e-08	PPR repeat
PPR_2	PF13041	254 - 301	4.5e-14	PPR repeat family
PPR	PF01535	257 - 286	8e-06	PPR repeat
PPR_2	PF13041	288 - 337	4.4e-14	PPR repeat family
PPR_3	PF13812	312 - 368	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	331 - 372	1.9e-12	PPR repeat family
TPR_24	PF23276	339 - 457	7.4e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	354 - 387	4e-13	PPR repeat
PPR_2	PF13041	361 - 405	1.7e-16	PPR repeat family
PPR	PF01535	361 - 391	3.3e-10	PPR repeat
PPR_3	PF13812	381 - 439	2.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	389 - 420	2.7e-08	PPR repeat
PPR_1	PF12854	428 - 459	4.4e-11	PPR repeat
PPR_3	PF13812	428 - 477	9.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	430 - 477	2.3e-14	PPR repeat family
PPR	PF01535	434 - 463	4.4e-07	PPR repeat
PPR_long	PF17177	444 - 565	4.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	468 - 514	1.1e-12	PPR repeat family
PPR_3	PF13812	492 - 546	2.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	497 - 529	3.1e-08	PPR repeat
PPR_2	PF13041	500 - 537	5.1e-08	PPR repeat family
PPR	PF01535	503 - 533	3.9e-06	PPR repeat
PPR_1	PF12854	532 - 564	1.2e-09	PPR repeat
PPR_2	PF13041	535 - 570	6.8e-07	PPR repeat family
PPR	PF01535	540 - 566	2.4e-06	PPR repeat
PPR_2	PF13041	570 - 619	4.7e-12	PPR repeat family
PPR_2	PF13041	640 - 688	7.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	564, 575, 785, 1410
Acc36I	ACCTGC	1 cut(s)	2150
AccI	GTMKAC	2 cut(s)	261, 1022
AccII	CGCG	2 cut(s)	185, 385
AccIII	TCCGGA	1 cut(s)	2179
AciI	CCGC	2 cut(s)	64, 220
AclI	AACGTT	1 cut(s)	1092
AclWI	GGATC	2 cut(s)	161, 174
AcsI	RAATTY	4 cut(s)	174, 395, 1463, 2171
AdeI	CACNNNGTG	2 cut(s)	956, 1712
AfaI	GTAC	2 cut(s)	1066, 1405
AfiI	CCNNNNNNNGG	2 cut(s)	87, 229
AflIII	ACRYGT	1 cut(s)	383
AgeI	ACCGGT	1 cut(s)	1845
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	8 cut(s)	149, 342, 391, 1398, 1589, 1667, 1754, 2152
AluI	AGCT	8 cut(s)	149, 342, 391, 1398, 1589, 1667, 1754, 2152
Alw26I	GTCTC	2 cut(s)	1465, 1723
AlwI	GGATC	2 cut(s)	161, 174
Ama87I	CYCGRG	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	2179
AoxI	GGCC	3 cut(s)	714, 777, 1455
ApaI	GGGCCC	1 cut(s)	781
ApeKI	GCWGC	1 cut(s)	2198
ApoI	RAATTY	4 cut(s)	174, 395, 1463, 2171
AseI	ATTAAT	2 cut(s)	681, 891
AsiGI	ACCGGT	1 cut(s)	1845
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	160, 777, 778
AsuC2I	CCSGG	4 cut(s)	164, 231, 405, 406
AsuHPI	GGTGA	3 cut(s)	393, 1698, 1979
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	781
BaeI	ACNNNNGTAYC	2 cut(s)	973, 1006
BamHI	GGATCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	781
BauI	CACGAG	1 cut(s)	1905
BbsI	GAAGAC	1 cut(s)	538
BbvCI	CCTCAGC	2 cut(s)	241, 1872
BbvI	GCAGC	1 cut(s)	2185
BccI	CCATC	8 cut(s)	115, 928, 992, 1097, 1217, 1996, 2054, 2083
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	1001
BclI	TGATCA	2 cut(s)	1345, 1524
BcnI	CCSGG	4 cut(s)	164, 231, 405, 406
BcoDI	GTCTC	2 cut(s)	1465, 1723
BfaI	CTAG	4 cut(s)	392, 1668, 1784, 1878
BfmI	CTRYAG	1 cut(s)	1954
BfuAI	ACCTGC	1 cut(s)	2150
BfuI	GTATCC	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	1143
BisI	GCNGC	1 cut(s)	2199
BlsI	GCNGC	1 cut(s)	2200
Bme1390I	CCNGG	5 cut(s)	164, 231, 405, 406, 549
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	160, 777, 778
BmiI	GGNNCC	4 cut(s)	162, 168, 778, 779
BmrFI	CCNGG	5 cut(s)	164, 231, 405, 406, 549
BmsI	GCATC	4 cut(s)	961, 1123, 1233, 1418
BpiI	GAAGAC	1 cut(s)	538
BpmI	CTGGAG	2 cut(s)	1489, 1776
Bpu10I	CCTNAGC	2 cut(s)	241, 1872
BpuMI	CCSGG	4 cut(s)	164, 231, 405, 406
BsaAI	YACGTR	1 cut(s)	876
BsaJI	CCNNGG	6 cut(s)	230, 321, 404, 405, 717, 1032
BsaWI	WCCGGW	2 cut(s)	1845, 2179
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 229
Bse118I	RCCGGY	1 cut(s)	1845
Bse3DI	GCAATG	1 cut(s)	2152
BseAI	TCCGGA	1 cut(s)	2179
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	6 cut(s)	230, 321, 404, 405, 717, 1032
BseGI	GGATG	4 cut(s)	715, 766, 1135, 1677
BseLI	CCNNNNNNNGG	2 cut(s)	87, 229
BseMI	GCAATG	1 cut(s)	2152
BseMII	CTCAG	3 cut(s)	255, 315, 1863
BseRI	GAGGAG	2 cut(s)	88, 746
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	1 cut(s)	2185
Bsh1236I	CGCG	2 cut(s)	185, 385
BshFI	GGCC	3 cut(s)	716, 779, 1457
BshTI	ACCGGT	1 cut(s)	1845
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	5 cut(s)	164, 230, 405, 1846, 2180
BslFI	GGGAC	2 cut(s)	1224, 1335
BslI	CCNNNNNNNGG	2 cut(s)	87, 229
BsmAI	GTCTC	2 cut(s)	1465, 1723
BsmFI	GGGAC	2 cut(s)	1224, 1335
BsnI	GGCC	3 cut(s)	716, 779, 1457
BsoBI	CYCGRG	1 cut(s)	404
Bsp120I	GGGCCC	1 cut(s)	777
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp13I	TCCGGA	1 cut(s)	2179
Bsp143I	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
Bsp19I	CCATGG	2 cut(s)	717, 1032
BspACI	CCGC	2 cut(s)	64, 220
BspANI	GGCC	3 cut(s)	716, 779, 1457
BspCNI	CTCAG	3 cut(s)	254, 314, 1864
BspEI	TCCGGA	1 cut(s)	2179
BspFNI	CGCG	2 cut(s)	185, 385
BspLI	GGNNCC	4 cut(s)	162, 168, 778, 779
BspMI	ACCTGC	1 cut(s)	2150
BspPI	GGATC	2 cut(s)	161, 174
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	2152
BsrFI	RCCGGY	1 cut(s)	1845
BssAI	RCCGGY	1 cut(s)	1845
BssECI	CCNNGG	6 cut(s)	230, 321, 404, 405, 717, 1032
BssMI	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
BssSI	CACGAG	1 cut(s)	1905
BssT1I	CCWWGG	3 cut(s)	321, 717, 1032
Bst2BI	CACGAG	1 cut(s)	1905
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	5 cut(s)	476, 931, 1326, 1609, 1958
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	2142
BstBAI	YACGTR	1 cut(s)	876
BstC8I	GCNNGC	6 cut(s)	62, 224, 247, 1560, 1665, 2056
BstDEI	CTNAG	4 cut(s)	241, 301, 1147, 1872
BstDSI	CCRYGG	2 cut(s)	717, 1032
BstF5I	GGATG	4 cut(s)	715, 766, 1135, 1677
BstFNI	CGCG	2 cut(s)	185, 385
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	5 cut(s)	169, 1146, 1348, 1422, 1527
BstMAI	GTCTC	2 cut(s)	1465, 1723
BstMBI	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
BstMWI	GCNNNNNNNGC	1 cut(s)	2142
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	3 cut(s)	64, 1312, 1478
BstSCI	CCNGG	5 cut(s)	162, 229, 403, 404, 547
BstSFI	CTRYAG	1 cut(s)	1954
BstSLI	GKGCMC	1 cut(s)	781
BstSNI	TACGTA	1 cut(s)	876
BstUI	CGCG	2 cut(s)	185, 385
BstV1I	GCAGC	1 cut(s)	2185
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	166, 1143
BstYI	RGATCY	2 cut(s)	166, 1143
BsuI	GTATCC	1 cut(s)	1001
BsuRI	GGCC	3 cut(s)	716, 779, 1457
BtgI	CCRYGG	2 cut(s)	717, 1032
BtsCI	GGATG	4 cut(s)	715, 766, 1135, 1677
BtsI	GCAGTG	3 cut(s)	61, 101, 618
BtsIMutI	CAGTG	4 cut(s)	61, 101, 618, 927
BveI	ACCTGC	1 cut(s)	2150
Cac8I	GCNNGC	6 cut(s)	62, 224, 247, 1560, 1665, 2056
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	1845
Cfr13I	GGNCC	3 cut(s)	160, 777, 778
Cfr9I	CCCGGG	1 cut(s)	404
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	1065, 1404
CspAI	ACCGGT	1 cut(s)	1845
CviAII	CATG	7 cut(s)	41, 61, 203, 718, 1033, 1309, 1475
CviQI	GTAC	2 cut(s)	1065, 1404
DdeI	CTNAG	4 cut(s)	241, 301, 1147, 1872
DpnI	GATC	5 cut(s)	168, 1145, 1347, 1421, 1526
DpnII	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
DraI	TTTAAA	1 cut(s)	1140
DraIII	CACNNNGTG	2 cut(s)	956, 1712
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco105I	TACGTA	1 cut(s)	876
Eco130I	CCWWGG	3 cut(s)	321, 717, 1032
Eco24I	GRGCYC	1 cut(s)	781
Eco32I	GATATC	1 cut(s)	2035
Eco47I	GGWCC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	404
EcoO109I	RGGNCCY	3 cut(s)	160, 777, 778
EcoRI	GAATTC	2 cut(s)	395, 1463
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	2035
EcoT14I	CCWWGG	3 cut(s)	321, 717, 1032
EcoT22I	ATGCAT	1 cut(s)	1433
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	3 cut(s)	321, 717, 1032
FaeI	CATG	7 cut(s)	44, 64, 206, 721, 1036, 1312, 1478
FalI	AAGNNNNNCTT	2 cut(s)	1326, 1358
FaqI	GGGAC	2 cut(s)	1224, 1335
FatI	CATG	7 cut(s)	40, 60, 202, 717, 1032, 1308, 1474
FbaI	TGATCA	2 cut(s)	1345, 1524
FblI	GTMKAC	2 cut(s)	261, 1022
Fnu4HI	GCNGC	1 cut(s)	2199
FokI	GGATG	4 cut(s)	722, 773, 1142, 1684
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	1 cut(s)	2199
FspBI	CTAG	4 cut(s)	392, 1668, 1784, 1878
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	2199
GsuI	CTGGAG	2 cut(s)	1489, 1776
HaeIII	GGCC	3 cut(s)	716, 779, 1457
HapII	CCGG	5 cut(s)	164, 230, 405, 1846, 2180
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	7 cut(s)	44, 64, 206, 721, 1036, 1312, 1478
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	3 cut(s)	499, 1450, 1483
HindII	GTYRAC	3 cut(s)	499, 1450, 1483
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	460, 644, 1937
HpaII	CCGG	5 cut(s)	164, 230, 405, 1846, 2180
HphI	GGTGA	3 cut(s)	393, 1698, 1979
Hpy166II	GTNNAC	7 cut(s)	262, 499, 695, 1023, 1450, 1483, 1843
Hpy188I	TCNGA	6 cut(s)	127, 181, 643, 649, 2001, 2074
Hpy188III	TCNNGA	7 cut(s)	1343, 1468, 1522, 1682, 1814, 2024, 2180
Hpy8I	GTNNAC	7 cut(s)	262, 499, 695, 1023, 1450, 1483, 1843
HpyAV	CCTTC	5 cut(s)	151, 1054, 1222, 1328, 1433
HpyCH4III	ACNGT	5 cut(s)	476, 931, 1326, 1609, 1958
HpyCH4IV	ACGT	2 cut(s)	875, 1092
HpyF10VI	GCNNNNNNNGC	1 cut(s)	2142
HpyF3I	CTNAG	4 cut(s)	241, 301, 1147, 1872
HpySE526I	ACGT	2 cut(s)	875, 1092
Hsp92II	CATG	7 cut(s)	44, 64, 206, 721, 1036, 1312, 1478
HspAI	GCGC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	2179
Ksp22I	TGATCA	2 cut(s)	1345, 1524
Kzo9I	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	1660
Lsp1109I	GCAGC	1 cut(s)	2185
LweI	GCATC	4 cut(s)	961, 1123, 1233, 1418
MaeI	CTAG	4 cut(s)	392, 1668, 1784, 1878
MaeII	ACGT	2 cut(s)	875, 1092
MaeIII	GTNAC	4 cut(s)	661, 871, 925, 1081
MalI	GATC	5 cut(s)	168, 1145, 1347, 1421, 1526
MboI	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
MboII	GAAGA	4 cut(s)	85, 543, 1906, 1988
MfeI	CAATTG	2 cut(s)	140, 507
MflI	RGATCY	2 cut(s)	166, 1143
MhlI	GDGCHC	1 cut(s)	781
MluI	ACGCGT	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	240, 621
Mph1103I	ATGCAT	1 cut(s)	1433
MroI	TCCGGA	1 cut(s)	2179
MslI	CAYNNNNRTG	3 cut(s)	932, 1628, 1639
MspI	CCGG	5 cut(s)	164, 230, 405, 1846, 2180
MspR9I	CCNGG	5 cut(s)	164, 231, 405, 406, 549
MunI	CAATTG	2 cut(s)	140, 507
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	2 cut(s)	185, 385
MwoI	GCNNNNNNNGC	1 cut(s)	2142
NciI	CCSGG	4 cut(s)	164, 231, 405, 406
NcoI	CCATGG	2 cut(s)	717, 1032
NdeII	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
NlaIII	CATG	7 cut(s)	44, 64, 206, 721, 1036, 1312, 1478
NlaIV	GGNNCC	4 cut(s)	162, 168, 778, 779
NmuCI	GTSAC	1 cut(s)	925
NsiI	ATGCAT	1 cut(s)	1433
NspI	RCATGY	3 cut(s)	64, 1312, 1478
PaeI	GCATGC	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	460, 644, 1937
PinAI	ACCGGT	1 cut(s)	1845
PkrI	GCNGC	1 cut(s)	2200
Ppu21I	YACGTR	1 cut(s)	876
PpuMI	RGGWCCY	1 cut(s)	160
PshBI	ATTAAT	2 cut(s)	681, 891
PsiI	TTATAA	4 cut(s)	564, 575, 785, 1410
Psp1406I	AACGTT	1 cut(s)	1092
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	4 cut(s)	162, 168, 778, 779
PspOMI	GGGCCC	1 cut(s)	777
PspPI	GGNCC	3 cut(s)	160, 777, 778
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	166, 1143
RsaI	GTAC	2 cut(s)	1066, 1405
RsaNI	GTAC	2 cut(s)	1065, 1404
RseI	CAYNNNNRTG	3 cut(s)	932, 1628, 1639
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	2199
Sau3AI	GATC	5 cut(s)	166, 1143, 1345, 1419, 1524
Sau96I	GGNCC	3 cut(s)	160, 777, 778
ScrFI	CCNGG	5 cut(s)	164, 231, 405, 406, 549
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	4 cut(s)	961, 1123, 1233, 1418
SfcI	CTRYAG	1 cut(s)	1954
SinI	GGWCC	1 cut(s)	160
SmaI	CCCGGG	1 cut(s)	406
SmiMI	CAYNNNNRTG	3 cut(s)	932, 1628, 1639
SnaBI	TACGTA	1 cut(s)	876
SphI	GCATGC	1 cut(s)	64
SsiI	CCGC	2 cut(s)	64, 220
SspMI	CTAG	4 cut(s)	392, 1668, 1784, 1878
StyD4I	CCNGG	5 cut(s)	162, 229, 403, 404, 547
StyI	CCWWGG	3 cut(s)	321, 717, 1032
TaaI	ACNGT	5 cut(s)	476, 931, 1326, 1609, 1958
TaiI	ACGT	2 cut(s)	878, 1095
TaqI	TCGA	3 cut(s)	1422, 1935, 2123
TatI	WGTACW	1 cut(s)	1403
TfiI	GAWTC	3 cut(s)	460, 644, 1937
TscAI	CASTG	4 cut(s)	61, 108, 618, 934
TseFI	GTSAC	1 cut(s)	925
TseI	GCWGC	1 cut(s)	2198
Tsp45I	GTSAC	1 cut(s)	925
TspDTI	ATGAA	8 cut(s)	29, 188, 303, 357, 473, 1172, 1985, 2174
TspGWI	ACGGA	1 cut(s)	1755
TspMI	CCCGGG	1 cut(s)	404
TspRI	CASTG	4 cut(s)	61, 108, 618, 934
VpaK11BI	GGWCC	1 cut(s)	160
VspI	ATTAAT	2 cut(s)	681, 891
XapI	RAATTY	4 cut(s)	174, 395, 1463, 2171
XceI	RCATGY	3 cut(s)	64, 1312, 1478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XmaI	CCCGGG	1 cut(s)	404
XmiI	GTMKAC	2 cut(s)	261, 1022
XspI	CTAG	4 cut(s)	392, 1668, 1784, 1878
Zsp2I	ATGCAT	1 cut(s)	1433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.