Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001535

Physical Location & Seq

Genomic Coordinates Reverse (-)

51958109 .. 51960536

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGACATTCGCTAATATGACTTTCCCTTTCTACGTTTACTTGCAGCTCTTCTCCTCACTGCCATCTATTACTTCTCTCTCGAATGTAGAAACCCAATTGAGAGCTCTTTTGGAGGACCCAGATCCTAAAATTTCAGAGGCAATTTCGATTTTTCATTATGCCATACATTCCAACCGCTTGCCTTCAGGTTCAGCCGCAGCCTGCAATTTTCTCGTAGACACTCTCTCAAGGTCGAAAAATTATGAACTAGCATTCTCAGTTTATACTAAGATGACCAAGGTTGGTATTTTTACAAGCTTTGTATCATTGAGTTGTTTGGTTTCATATTTTGTCAATATCCGTAAGCCCGAATTTGCACATGGGGTTTACTGCTTGGTATTAAAGCGTGGATTTCAGTTAAATGAGTGTGTTATGAATCTTGCATTAAAGGGGTTTTGTTCGAATGATGAAGTTGACAAGGCAATCGATTTGTTTAGAGTAATGGGAAGACATTTTGTAATGCCTGGCATTCGTAGTTATAACATTCTTATAGATGGACTTTGCAAAGCAAAAAAGTTGAAAGAAGCAGTGGAATTGTTGGTTGATATGGAGGTGTCAGATTCTGAACCGAATGTGGTAACGTACAGCACATTGATTAATGGATTTTGTAAACAGGGTAGAATGGACGAGGCCATGGGTTTCTTGGAGGAAATGAGGCAGAAGGGTTTGGAAATAGATGTTTTTGTATATAGTGCCCTTATAAGTGGTTTTTGTGCTAAAGGGAGTTTTGATAGAGGAAAACAACTGTTCGATGAGATGTTAAACAAGGGTATTTCTCCTAATGTGGTTACATATAGTTGTTTGATTAATTTTCTTTCAAAGGCAGGGAAGTGGAAAGAAGTCACTGTGATGATAAATGATATGACACAAAGTGGAGTTCCCCCTGATGCTGTTACTTACACAGGTATCCTTGATGGGCTTTTCAAAAATGGAATGGCTACAAAAGCCATGGGGATGTTCACTTTAATGCTCATGAAGGGTAAAGAGCCTAATAATGTAACATACAACGTTATGATTGATGGACTATGCAAGGAGGGGTTGATGGATGATGCTTTAAAGATCTTAGAAATGATGAAAGGGAAAGGTGTAAAGCCTGATGTAATTACTTACAACACATTACTAATGGGACTATTCTGTGATGGGAAGGTTGATGAGGCAATGAAACTTTTCAGTAAGATAACAAACGATGAGAACTTTGTCGAGCCAGATGTTATCACATATAACATGGTCATTTTGGGACTGTGCAAGGAAGGTAATCTTGATGAGGCTATGGAGATTTATCATACAATGATTGAAAGGGGCATTTCTGGTAGCTTATGTACTTATAATACTTTGATAGATAGATGCCTACAGGAAGGATTAGCTGACAAGGCCATAGAATTCTGGAGACATGCAGTGGACTTGGGAGTTATTCCTAATTCAATCACTTACGGTGTCATGATCAATGGATTTTGCAAAAATCAAATGTTCAGGGTTGCAAAAGGACTTTTTACTAAAATGAGAGCTTCTGGGATTAGTCCTACTGTAAATGACTACAACGCTTTGATGTCATCGTTGTGCAAGGAGGGTAGTTTGGGGCAAGCTAGGATGTTCTTTCAAGAAATGAGAACGGCAAATTATTTGCCTAGTGTTGTCTCATTTAATACTATAATTAATGGAATTCTAAAAGCTGGAGATGTTAAATCTGCTAAAGAGTTGCTAGAAGACATGTTCAAATTGGGTTTAACTCCTGATATAATTACATTCTCTACATTAGTAAACCCGTTTTCAAAACTTGGGCTCTTGGATGAGGCTAGAATGTGTGTTGAGAAGATGATTGCTCGTGGTTTTGAACCTGATGTCTTTGTATTTGATTCTTTATTAAAGGGCTATAGTTCAAAAGGTGAAACAGAAGAAATTGTTAACTTGCTTCATCAGATGGCAGACAAGGGTGTTATTCTTGACAAAGAAATAACTTCTACCATCTTGGCGTGCCTCTGTCAAATCTCTGACGATGTTGATGTGATGGAGGTTCTCCCAACTTTTTCCAAAGAGACATCAAAAGGAATAAGCAGTACCTGCAATGAGCTATTGATGAAAGTCAATAAATCTTTCCCGGAACTTAAGTTACGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

719

Amino Acids

79.99

Weight (kDa)

5.51

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	67 - 233	5.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	134 - 182	3.6e-10	PPR repeat family
PPR_1	PF12854	167 - 197	1.5e-09	PPR repeat
PPR_2	PF13041	168 - 217	6.7e-17	PPR repeat family
PPR	PF01535	172 - 198	1.6e-06	PPR repeat
PPR_1	PF12854	202 - 232	7.1e-16	PPR repeat
PPR_2	PF13041	203 - 251	5.7e-18	PPR repeat family
PPR	PF01535	206 - 236	2e-10	PPR repeat
PPR_3	PF13812	228 - 285	5.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	234 - 266	1.1e-08	PPR repeat
PPR_2	PF13041	239 - 286	2.9e-14	PPR repeat family
PPR	PF01535	242 - 271	2.7e-06	PPR repeat
PPR_long	PF17177	255 - 331	7.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	269 - 301	8e-06	PPR repeat
PPR_2	PF13041	273 - 322	4.4e-14	PPR repeat family
PPR_3	PF13812	298 - 353	2.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	305 - 336	8.7e-06	PPR repeat
PPR_2	PF13041	311 - 357	8.5e-13	PPR repeat family
TPR_24	PF23276	325 - 442	9.2e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	339 - 372	1e-12	PPR repeat
PPR_2	PF13041	343 - 390	8.9e-18	PPR repeat family
PPR	PF01535	346 - 376	2.7e-10	PPR repeat
PPR_3	PF13812	366 - 428	3.9e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	374 - 405	4.8e-12	PPR repeat
PPR_2	PF13041	378 - 406	6.2e-06	PPR repeat family
PPR_1	PF12854	413 - 443	6.8e-11	PPR repeat
PPR_3	PF13812	413 - 462	1.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	415 - 462	3.4e-14	PPR repeat family
PPR	PF01535	418 - 448	5.1e-08	PPR repeat
PPR_long	PF17177	428 - 541	4.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	453 - 499	2.9e-12	PPR repeat family
PPR_1	PF12854	482 - 514	5.7e-07	PPR repeat
PPR	PF01535	488 - 518	1e-05	PPR repeat
PPR_1	PF12854	517 - 549	1.2e-06	PPR repeat
PPR_long	PF17177	541 - 656	6.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	545 - 601	5.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	553 - 583	1.4e-06	PPR repeat
PPR_2	PF13041	555 - 602	1.9e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28010
fragaria_vesca	FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_3g35120 FvH4_5g33200 FvH4_5g33200 FvH4_5g33200
malus_domestica	MD08G1215500.v1.1 MD15G1399800.v1.1 MD15G1400000.v1.1
prunus_persica	Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1 Prupe.1G547200_v2.0.a1
pyrus_communis	pycom08g18660 pycom15g35860
rosa_chinensis	RchiOBHm_Chr5g0048941 RchiOBHm_Chr7g0231581
rosa_laevigata	RLG00000001411 RLG00000001412 RLG00000034570
rosa_multiflora	Rmu_sc0007946.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032970 Rroxscaffold_3G00229080
rosa_rugosa	Rorug05G0241400 Rorug07G0267200 Rorug07G0267300
rosa_samantha	Rh5AG321400 Rh5CG357100 Rh5DG343500 Rh7AG421600 Rh7AG421700 Rh7AG421900 Rh7BG396300 Rh7CG441900 Rh7CG442200 Rh7DG414300
rosa_wichuraiana	Rw5G030330 Rw7G034790 Rw7G034880 Rw7G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	519, 740, 1365
Acc36I	ACCTGC	1 cut(s)	2105
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	2 cut(s)	175, 195
AclI	AACGTT	1 cut(s)	1047
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	4 cut(s)	129, 350, 1418, 1698
AcuI	CTGAAG	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	911
AfaI	GTAC	3 cut(s)	623, 1360, 2095
AflII	CTTAAG	1 cut(s)	2141
AflIII	ACRYGT	1 cut(s)	1746
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	9 cut(s)	46, 104, 297, 1353, 1403, 1544, 1622, 1709, 2107
AluI	AGCT	9 cut(s)	46, 104, 297, 1353, 1403, 1544, 1622, 1709, 2107
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	3 cut(s)	1420, 1678, 2066
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	2 cut(s)	602, 2097
AoxI	GGCC	2 cut(s)	669, 1410
ApeKI	GCWGC	3 cut(s)	43, 197, 2153
ApoI	RAATTY	4 cut(s)	129, 350, 1418, 1698
AseI	ATTAAT	3 cut(s)	636, 846, 1692
Asp700I	GAANNNNTTC	1 cut(s)	1205
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	2135
AsuHPI	GGTGA	1 cut(s)	1934
AsuII	TTCGAA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	736
BaeI	ACNNNNGTAYC	2 cut(s)	928, 961
BanII	GRGCYC	2 cut(s)	106, 1821
BauI	CACGAG	1 cut(s)	1860
BbsI	GAAGAC	2 cut(s)	493, 1749
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	55, 209, 2140
BccI	CCATC	9 cut(s)	70, 527, 947, 1052, 1075, 1172, 1951, 2009, 2038
BceAI	ACGGC	1 cut(s)	1665
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	956
BclI	TGATCA	1 cut(s)	1479
BcnI	CCSGG	1 cut(s)	2135
BcoDI	GTCTC	3 cut(s)	1420, 1678, 2066
BfaI	CTAG	5 cut(s)	248, 1623, 1665, 1739, 1833
BfmI	CTRYAG	2 cut(s)	1388, 1909
BfrI	CTTAAG	1 cut(s)	2141
BfuAI	ACCTGC	1 cut(s)	2105
BfuI	GTATCC	1 cut(s)	956
BglII	AGATCT	1 cut(s)	1098
BisI	GCNGC	4 cut(s)	44, 195, 198, 2154
BlsI	GCNGC	4 cut(s)	45, 196, 199, 2155
Bme1390I	CCNGG	2 cut(s)	504, 2135
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	504, 2135
BmsI	GCATC	3 cut(s)	916, 1078, 1373
BpiI	GAAGAC	2 cut(s)	493, 1749
BpmI	CTGGAG	2 cut(s)	1444, 1731
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	2135
Bsa29I	ATCGAT	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	2150
BsaJI	CCNNGG	3 cut(s)	276, 672, 987
Bse3DI	GCAATG	2 cut(s)	1203, 2107
BseBI	CCWGG	1 cut(s)	504
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	276, 672, 987
BseGI	GGATG	4 cut(s)	999, 1090, 1632, 1831
BseMI	GCAATG	2 cut(s)	1203, 2107
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	3 cut(s)	55, 209, 2140
BshFI	GGCC	2 cut(s)	671, 1412
BshVI	ATCGAT	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	2135
BslFI	GGGAC	2 cut(s)	1179, 1290
BsmAI	GTCTC	3 cut(s)	1420, 1678, 2066
BsmFI	GGGAC	2 cut(s)	1179, 1290
BsmI	GAATGC	2 cut(s)	251, 507
BsnI	GGCC	2 cut(s)	671, 1412
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	106, 736, 1821
Bsp143I	GATC	3 cut(s)	121, 1098, 1479
Bsp19I	CCATGG	2 cut(s)	672, 987
BspACI	CCGC	2 cut(s)	175, 195
BspANI	GGCC	2 cut(s)	671, 1412
BspCNI	CTCAG	1 cut(s)	269
BspDI	ATCGAT	1 cut(s)	465
BspHI	TCATGA	2 cut(s)	1011, 1476
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	2105
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	440
BspTI	CTTAAG	1 cut(s)	2141
BsrDI	GCAATG	2 cut(s)	1203, 2107
BssECI	CCNNGG	3 cut(s)	276, 672, 987
BssMI	GATC	3 cut(s)	121, 1098, 1479
BssSI	CACGAG	1 cut(s)	1860
BssT1I	CCWWGG	3 cut(s)	276, 672, 987
Bst2BI	CACGAG	1 cut(s)	1860
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	5 cut(s)	786, 886, 1281, 1472, 1564
Bst6I	CTCTTC	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	2141
BstAPI	GCANNNNNTGC	1 cut(s)	2097
BstBAI	YACGTR	1 cut(s)	2150
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	179, 202, 1620, 2011
BstDEI	CTNAG	3 cut(s)	256, 267, 1102
BstDSI	CCRYGG	2 cut(s)	672, 987
BstF5I	GGATG	4 cut(s)	999, 1090, 1632, 1831
BstKTI	GATC	3 cut(s)	124, 1101, 1482
BstMAI	GTCTC	3 cut(s)	1420, 1678, 2066
BstMBI	GATC	3 cut(s)	121, 1098, 1479
BstMWI	GCNNNNNNNGC	3 cut(s)	983, 1409, 2097
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	2 cut(s)	1433, 1750
BstSCI	CCNGG	2 cut(s)	502, 2133
BstSFI	CTRYAG	2 cut(s)	1388, 1909
BstSLI	GKGCMC	1 cut(s)	736
BstV1I	GCAGC	3 cut(s)	55, 209, 2140
BstV2I	GAAGAC	2 cut(s)	493, 1749
BstX2I	RGATCY	2 cut(s)	121, 1098
BstYI	RGATCY	2 cut(s)	121, 1098
Bsu15I	ATCGAT	1 cut(s)	465
BsuI	GTATCC	1 cut(s)	956
BsuRI	GGCC	2 cut(s)	671, 1412
BsuTUI	ATCGAT	1 cut(s)	465
BtgI	CCRYGG	2 cut(s)	672, 987
BtsCI	GGATG	4 cut(s)	999, 1090, 1632, 1831
BtsI	GCAGTG	3 cut(s)	56, 573, 1440
BtsIMutI	CAGTG	4 cut(s)	56, 573, 882, 1440
BveI	ACCTGC	1 cut(s)	2105
Cac8I	GCNNGC	4 cut(s)	179, 202, 1620, 2011
CaiI	CAGNNNCTG	2 cut(s)	602, 2097
CciI	TCATGA	2 cut(s)	1011, 1476
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	465
Csp6I	GTAC	3 cut(s)	622, 1359, 2094
CviAII	CATG	8 cut(s)	359, 673, 988, 1012, 1264, 1430, 1477, 1747
CviQI	GTAC	3 cut(s)	622, 1359, 2094
DdeI	CTNAG	3 cut(s)	256, 267, 1102
DpnI	GATC	3 cut(s)	123, 1100, 1481
DpnII	GATC	3 cut(s)	121, 1098, 1479
DraI	TTTAAA	1 cut(s)	1095
DraIII	CACNNNGTG	1 cut(s)	911
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	3 cut(s)	276, 672, 987
Eco24I	GRGCYC	2 cut(s)	106, 1821
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRI	GAATTC	2 cut(s)	1418, 1698
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	3 cut(s)	276, 672, 987
EcoT38I	GRGCYC	2 cut(s)	106, 1821
ErhI	CCWWGG	3 cut(s)	276, 672, 987
FaeI	CATG	8 cut(s)	362, 676, 991, 1015, 1267, 1433, 1480, 1750
FalI	AAGNNNNNCTT	2 cut(s)	1281, 1313
FaqI	GGGAC	2 cut(s)	1179, 1290
FatI	CATG	8 cut(s)	358, 672, 987, 1011, 1263, 1429, 1476, 1746
FbaI	TGATCA	1 cut(s)	1479
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	44, 195, 198, 2154
FokI	GGATG	4 cut(s)	1006, 1097, 1639, 1838
FriOI	GRGCYC	2 cut(s)	106, 1821
Fsp4HI	GCNGC	4 cut(s)	44, 195, 198, 2154
FspBI	CTAG	5 cut(s)	248, 1623, 1665, 1739, 1833
GluI	GCNGC	4 cut(s)	44, 195, 198, 2154
GsuI	CTGGAG	2 cut(s)	1444, 1731
HaeIII	GGCC	2 cut(s)	671, 1412
HapII	CCGG	1 cut(s)	2135
Hin1II	CATG	8 cut(s)	362, 676, 991, 1015, 1267, 1433, 1480, 1750
HincII	GTYRAC	2 cut(s)	454, 1942
HindII	GTYRAC	2 cut(s)	454, 1942
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	3 cut(s)	415, 599, 1892
HpaI	GTTAAC	1 cut(s)	1942
HpaII	CCGG	1 cut(s)	2135
HphI	GGTGA	1 cut(s)	1934
Hpy166II	GTNNAC	9 cut(s)	37, 217, 367, 454, 650, 999, 1438, 1798, 1942
Hpy188I	TCNGA	5 cut(s)	136, 598, 604, 1956, 2029
Hpy188III	TCNNGA	8 cut(s)	79, 1012, 1298, 1423, 1477, 1637, 1769, 1979
Hpy8I	GTNNAC	9 cut(s)	37, 217, 367, 454, 650, 999, 1438, 1798, 1942
HpyAV	CCTTC	6 cut(s)	192, 694, 1009, 1177, 1283, 1388
HpyCH4III	ACNGT	5 cut(s)	786, 886, 1281, 1472, 1564
HpyCH4IV	ACGT	4 cut(s)	33, 620, 1047, 2149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	983, 1409, 2097
HpyF3I	CTNAG	3 cut(s)	256, 267, 1102
HpySE526I	ACGT	4 cut(s)	33, 620, 1047, 2149
Hsp92II	CATG	8 cut(s)	362, 676, 991, 1015, 1267, 1433, 1480, 1750
Ksp22I	TGATCA	1 cut(s)	1479
KspAI	GTTAAC	1 cut(s)	1942
Kzo9I	GATC	3 cut(s)	121, 1098, 1479
LguI	GCTCTTC	1 cut(s)	53
Lsp1109I	GCAGC	3 cut(s)	55, 209, 2140
LweI	GCATC	3 cut(s)	916, 1078, 1373
MaeI	CTAG	5 cut(s)	248, 1623, 1665, 1739, 1833
MaeII	ACGT	4 cut(s)	33, 620, 1047, 2149
MaeIII	GTNAC	6 cut(s)	616, 826, 880, 931, 1036, 2145
MalI	GATC	3 cut(s)	123, 1100, 1481
MboI	GATC	3 cut(s)	121, 1098, 1479
MboII	GAAGA	5 cut(s)	40, 498, 1754, 1861, 1943
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	2 cut(s)	121, 1098
MhlI	GDGCHC	3 cut(s)	106, 736, 1821
MmeI	TCCRAC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	1205
MslI	CAYNNNNRTG	4 cut(s)	887, 992, 1004, 1594
MspCI	CTTAAG	1 cut(s)	2141
MspI	CCGG	1 cut(s)	2135
MspR9I	CCNGG	2 cut(s)	504, 2135
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	2 cut(s)	251, 507
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	983, 1409, 2097
NciI	CCSGG	1 cut(s)	2135
NcoI	CCATGG	2 cut(s)	672, 987
NdeII	GATC	3 cut(s)	121, 1098, 1479
NlaIII	CATG	8 cut(s)	362, 676, 991, 1015, 1267, 1433, 1480, 1750
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	2 cut(s)	1433, 1750
NspV	TTCGAA	1 cut(s)	440
PagI	TCATGA	2 cut(s)	1011, 1476
PciI	ACATGT	1 cut(s)	1746
PciSI	GCTCTTC	1 cut(s)	53
PctI	GAATGC	2 cut(s)	251, 507
PdmI	GAANNNNTTC	1 cut(s)	1205
PfeI	GAWTC	3 cut(s)	415, 599, 1892
PfoI	TCCNGGA	1 cut(s)	2133
PkrI	GCNGC	4 cut(s)	45, 196, 199, 2155
Ppu21I	YACGTR	1 cut(s)	2150
PpuMI	RGGWCCY	1 cut(s)	115
PscI	ACATGT	1 cut(s)	1746
PshBI	ATTAAT	3 cut(s)	636, 846, 1692
PsiI	TTATAA	3 cut(s)	519, 740, 1365
Psp124BI	GAGCTC	1 cut(s)	106
Psp1406I	AACGTT	1 cut(s)	1047
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
PsrI	GAACNNNNNNTAC	1 cut(s)	2130
PstNI	CAGNNNCTG	2 cut(s)	602, 2097
PsuI	RGATCY	2 cut(s)	121, 1098
RsaI	GTAC	3 cut(s)	623, 1360, 2095
RsaNI	GTAC	3 cut(s)	622, 1359, 2094
RseI	CAYNNNNRTG	4 cut(s)	887, 992, 1004, 1594
SacI	GAGCTC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	53
SatI	GCNGC	4 cut(s)	44, 195, 198, 2154
Sau3AI	GATC	3 cut(s)	121, 1098, 1479
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	504, 2135
SduI	GDGCHC	3 cut(s)	106, 736, 1821
SfaNI	GCATC	3 cut(s)	916, 1078, 1373
SfcI	CTRYAG	2 cut(s)	1388, 1909
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	4 cut(s)	887, 992, 1004, 1594
SmlI	CTYRAG	2 cut(s)	226, 2141
SmoI	CTYRAG	2 cut(s)	226, 2141
SsiI	CCGC	2 cut(s)	175, 195
SspMI	CTAG	5 cut(s)	248, 1623, 1665, 1739, 1833
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	502, 2133
StyI	CCWWGG	3 cut(s)	276, 672, 987
TaaI	ACNGT	5 cut(s)	786, 886, 1281, 1472, 1564
TaiI	ACGT	4 cut(s)	36, 623, 1050, 2152
TaqI	TCGA	7 cut(s)	80, 146, 233, 440, 465, 789, 1239
TatI	WGTACW	1 cut(s)	1358
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	3 cut(s)	415, 599, 1892
TscAI	CASTG	4 cut(s)	63, 573, 889, 1440
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	3 cut(s)	43, 197, 2153
Tsp45I	GTSAC	1 cut(s)	880
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	4 cut(s)	63, 573, 889, 1440
Vha464I	CTTAAG	1 cut(s)	2141
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	3 cut(s)	636, 846, 1692
XapI	RAATTY	4 cut(s)	129, 350, 1418, 1698
XceI	RCATGY	2 cut(s)	1433, 1750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	1205
XspI	CTAG	5 cut(s)	248, 1623, 1665, 1739, 1833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.