Rh7CG442300

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006510
Physical Location & Seq
Reverse (-)
57962050 .. 57968712
6663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG442300.1

Sequence Viewer

Length: 1026 bp
ATGATTAAGTGGACACTTACTCAGTTAGCTGTTGGCCACTTGGGCAAGCCTGACAAAAGACTTGGTGTTCGTATGGCATTAGTCAATGACAGGGTTGCACAAAGTGGAAGTTTGGCCAAGGCTTCTGAAATCCTGGCATTTGATCTTGTTCAAGGGGCACTTGTAAAATGGAGTTCTGTTATGGACAAGTCATTGCCCGAGCCCCCAACAGCTGTTTTTCTGCATGGAATTCTAGGTAGCAGGAAAAATTGGGGAACATTCACTAGGAGATTGGCCCAGGAATTTCCAACGTGGCAGTTCCTATTGGTGGACCTGCGGTGTCATGGTGATTCAGCCTCAGTTAAGAAAACAGGCCCCCATAATGTTTCTTCAACTGCTCTTGATGTCTTAAAACTAGTTCGGCAGCTTAGAATAACACCTCGAGTTTTGGTTGGTCACAGTTTCGGGGGGAAAGTTGCCTTGAGCATGGTGGAGCAAGCTGCAAAGCCTCTTGCACGACCAGTCAGAGTTTGGGTTCTAGACGCTACTCCTGGAAAGGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCTGTCCTAAGTACTCTACCCAAAGAGGTTTCCTCAAAGCGGGATGTTGTGGAAGCTTTAGTTCAAAAAGGATTCTCCAAAGATGTGGCACAGTGGGTGGTTACTAATCTTCGACCTAGTGGTCCTCTTGGTTCAACACCATCCACCTTCTCTTGGACATTCGATCTCAATGGAATTTCTGAAATGTATCAATCTTATGAAGAAACAAATTTATGGAAAATTGTAGAAGATGTGCCCCGAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCTCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTTGAGGAGGGAGGTGGAGTTGAAATGCATGTCCTTGAGGATGCAGGTCACTGGGTGCATGCGGATAATCCGGATGGGCTCTTTAGGATTCTTTCTTCTTCTTTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

341

Amino Acids

37.58

Weight (kDa)

7.92

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 72 - 333 4.3e-20 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 72 - 176 5.4e-11 alpha/beta hydrolase fold
Hydrolase_4 PF12146 72 - 175 3.3e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 702
Acc36I ACCTGC 2 cut(s) 321, 950
AccIII TCCGGA 1 cut(s) 985
AciI CCGC 3 cut(s) 316, 622, 977
AcoI YGGCCR 2 cut(s) 34, 114
AcsI RAATTY 4 cut(s) 228, 281, 756, 790
AdeI CACNNNGTG 2 cut(s) 104, 970
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 3 cut(s) 307, 621, 735
AgsI TTSAA 6 cut(s) 152, 372, 647, 717, 844, 938
AhlI ACTAGT 1 cut(s) 394
AjnI CCWGG 4 cut(s) 132, 276, 529, 544
AluBI AGCT 7 cut(s) 29, 212, 406, 479, 638, 858, 910
AluI AGCT 7 cut(s) 29, 212, 406, 479, 638, 858, 910
Ama87I CYCGRG 3 cut(s) 197, 420, 819
Aor13HI TCCGGA 1 cut(s) 985
AoxI GGCC 4 cut(s) 34, 114, 273, 352
ApeKI GCWGC 3 cut(s) 403, 479, 899
ApoI RAATTY 4 cut(s) 228, 281, 756, 790
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AseI ATTAAT 1 cut(s) 578
AspS9I GGNCC 5 cut(s) 274, 310, 353, 562, 704
AsuHPI GGTGA 1 cut(s) 338
AvaI CYCGRG 3 cut(s) 197, 420, 819
AvaII GGWCC 3 cut(s) 310, 562, 704
BaeGI GKGCMC 2 cut(s) 160, 819
BalI TGGCCA 2 cut(s) 36, 116
BanII GRGCYC 3 cut(s) 204, 874, 996
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 3 cut(s) 415, 466, 886
BccI CCATC 5 cut(s) 548, 573, 730, 861, 983
BciT130I CCWGG 4 cut(s) 134, 278, 531, 546
BcuI ACTAGT 1 cut(s) 394
BfaI CTAG 6 cut(s) 233, 264, 395, 518, 699, 875
BfuAI ACCTGC 2 cut(s) 321, 950
BglI GCCNNNNNGGC 1 cut(s) 42
BglII AGATCT 1 cut(s) 880
BisI GCNGC 3 cut(s) 404, 480, 900
BlsI GCNGC 3 cut(s) 405, 481, 901
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 4 cut(s) 134, 278, 531, 546
Bme18I GGWCC 3 cut(s) 310, 562, 704
BmeT110I CYCGRG 3 cut(s) 197, 420, 819
BmgT120I GGNCC 5 cut(s) 274, 310, 353, 562, 704
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 4 cut(s) 134, 278, 531, 546
BmrI ACTGGG 1 cut(s) 976
BmsI GCATC 1 cut(s) 946
BmuI ACTGGG 1 cut(s) 976
BplI GAGNNNNNCTC 2 cut(s) 599, 631
BpmI CTGGAG 1 cut(s) 869
Bpu10I CCTNAGC 1 cut(s) 903
BpuEI CTTGAG 2 cut(s) 481, 971
BsaJI CCNNGG 3 cut(s) 117, 276, 820
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 621, 735
Bse1I ACTGG 3 cut(s) 500, 971, 1021
Bse3DI GCAATG 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 985
BseBI CCWGG 4 cut(s) 134, 278, 531, 546
BseDI CCNNGG 3 cut(s) 117, 276, 820
BseGI GGATG 6 cut(s) 559, 565, 631, 722, 961, 994
BseLI CCNNNNNNNGG 3 cut(s) 307, 621, 735
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 3 cut(s) 35, 351, 894
BseNI ACTGG 3 cut(s) 500, 971, 1021
BseRI GAGGAG 2 cut(s) 920, 935
BseSI GKGCMC 2 cut(s) 160, 819
BseXI GCAGC 3 cut(s) 415, 466, 886
BshFI GGCC 4 cut(s) 36, 116, 275, 354
BsiHKCI CYCGRG 3 cut(s) 197, 420, 819
BsiSI CCGG 1 cut(s) 986
BslI CCNNNNNNNGG 3 cut(s) 307, 621, 735
BsnI GGCC 4 cut(s) 36, 116, 275, 354
BsoBI CYCGRG 3 cut(s) 197, 420, 819
Bsp1286I GDGCHC 5 cut(s) 160, 204, 819, 874, 996
Bsp13I TCCGGA 1 cut(s) 985
Bsp143I GATC 3 cut(s) 142, 745, 880
BspACI CCGC 3 cut(s) 316, 622, 977
BspANI GGCC 4 cut(s) 36, 116, 275, 354
BspCNI CTCAG 3 cut(s) 34, 350, 895
BspEI TCCGGA 1 cut(s) 985
BspLI GGNNCC 1 cut(s) 355
BspMI ACCTGC 2 cut(s) 321, 950
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 3 cut(s) 500, 971, 1021
BssECI CCNNGG 3 cut(s) 117, 276, 820
BssMI GATC 3 cut(s) 142, 745, 880
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 4 cut(s) 134, 278, 531, 546
Bst4CI ACNGT 2 cut(s) 440, 675
BstC8I GCNNGC 5 cut(s) 47, 477, 860, 912, 975
BstDEI CTNAG 5 cut(s) 21, 337, 407, 590, 903
BstF5I GGATG 6 cut(s) 559, 565, 631, 722, 961, 994
BstKTI GATC 3 cut(s) 145, 748, 883
BstMBI GATC 3 cut(s) 142, 745, 880
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 4 cut(s) 134, 278, 531, 546
BstNSI RCATGY 2 cut(s) 947, 977
BstSCI CCNGG 4 cut(s) 132, 276, 529, 544
BstSLI GKGCMC 2 cut(s) 160, 819
BstV1I GCAGC 3 cut(s) 415, 466, 886
BstX2I RGATCY 1 cut(s) 880
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 1 cut(s) 880
BsuRI GGCC 4 cut(s) 36, 116, 275, 354
BtsCI GGATG 6 cut(s) 559, 565, 631, 722, 961, 994
BtsIMutI CAGTG 2 cut(s) 680, 964
BveI ACCTGC 2 cut(s) 321, 950
Cac8I GCNNGC 5 cut(s) 47, 477, 860, 912, 975
Cfr13I GGNCC 5 cut(s) 274, 310, 353, 562, 704
CseI GACGC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 594
CviAII CATG 7 cut(s) 224, 323, 466, 830, 896, 944, 974
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 5 cut(s) 21, 337, 407, 590, 903
DpnI GATC 3 cut(s) 144, 747, 882
DpnII GATC 3 cut(s) 142, 745, 880
DraIII CACNNNGTG 2 cut(s) 104, 970
DrdI GACNNNNNNGTC 1 cut(s) 702
DseDI GACNNNNNNGTC 1 cut(s) 702
EaeI YGGCCR 2 cut(s) 34, 114
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 3 cut(s) 204, 874, 996
Eco47I GGWCC 3 cut(s) 310, 562, 704
Eco88I CYCGRG 3 cut(s) 197, 420, 819
EcoO109I RGGNCCY 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 4 cut(s) 132, 276, 529, 544
EcoT14I CCWWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 945
EcoT38I GRGCYC 3 cut(s) 204, 874, 996
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 7 cut(s) 227, 326, 469, 833, 899, 947, 977
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 7 cut(s) 223, 322, 465, 829, 895, 943, 973
FauI CCCGC 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 404, 480, 900
FokI GGATG 6 cut(s) 552, 566, 638, 709, 968, 1001
FriOI GRGCYC 3 cut(s) 204, 874, 996
Fsp4HI GCNGC 3 cut(s) 404, 480, 900
FspBI CTAG 6 cut(s) 233, 264, 395, 518, 699, 875
GluI GCNGC 3 cut(s) 404, 480, 900
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 4 cut(s) 36, 116, 275, 354
HapII CCGG 1 cut(s) 986
HgaI GACGC 1 cut(s) 530
Hin1II CATG 7 cut(s) 227, 326, 469, 833, 899, 947, 977
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 4 cut(s) 329, 654, 892, 1003
HpaII CCGG 1 cut(s) 986
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 3 cut(s) 12, 310, 835
Hpy188I TCNGA 3 cut(s) 127, 506, 763
Hpy188III TCNNGA 6 cut(s) 380, 518, 841, 875, 886, 986
Hpy8I GTNNAC 3 cut(s) 12, 310, 835
HpyAV CCTTC 1 cut(s) 739
HpyCH4III ACNGT 2 cut(s) 440, 675
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 8 cut(s) 98, 223, 482, 494, 862, 943, 959, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 5 cut(s) 21, 337, 407, 590, 903
HpySE526I ACGT 1 cut(s) 290
Hsp92II CATG 7 cut(s) 227, 326, 469, 833, 899, 947, 977
Kpn2I TCCGGA 1 cut(s) 985
Kzo9I GATC 3 cut(s) 142, 745, 880
LmnI GCTCC 3 cut(s) 472, 855, 907
Lsp1109I GCAGC 3 cut(s) 415, 466, 886
LweI GCATC 1 cut(s) 946
MaeI CTAG 6 cut(s) 233, 264, 395, 518, 699, 875
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 3 cut(s) 434, 682, 962
MalI GATC 3 cut(s) 144, 747, 882
MboI GATC 3 cut(s) 142, 745, 880
MboII GAAGA 7 cut(s) 360, 683, 794, 821, 890, 1002, 1005
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 5 cut(s) 160, 204, 819, 874, 996
MlsI TGGCCA 2 cut(s) 36, 116
MluCI AATT 7 cut(s) 228, 247, 281, 575, 756, 790, 801
MluNI TGGCCA 2 cut(s) 36, 116
MmeI TCCRAC 1 cut(s) 311
Mox20I TGGCCA 2 cut(s) 36, 116
Mph1103I ATGCAT 1 cut(s) 945
MroI TCCGGA 1 cut(s) 985
MscI TGGCCA 2 cut(s) 36, 116
MseI TTAA 4 cut(s) 6, 342, 389, 578
Msp20I TGGCCA 2 cut(s) 36, 116
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 986
MspR9I CCNGG 4 cut(s) 134, 278, 531, 546
MvaI CCWGG 4 cut(s) 134, 278, 531, 546
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 3 cut(s) 142, 745, 880
NlaIII CATG 7 cut(s) 227, 326, 469, 833, 899, 947, 977
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 434, 962
NsiI ATGCAT 1 cut(s) 945
NspI RCATGY 2 cut(s) 947, 977
PaeI GCATGC 1 cut(s) 977
PaeR7I CTCGAG 1 cut(s) 420
PfeI GAWTC 4 cut(s) 329, 654, 892, 1003
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 3 cut(s) 405, 481, 901
PshBI ATTAAT 1 cut(s) 578
Psp6I CCWGG 4 cut(s) 132, 276, 529, 544
PspGI CCWGG 4 cut(s) 132, 276, 529, 544
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 5 cut(s) 274, 310, 353, 562, 704
PspXI VCTCGAGB 1 cut(s) 420
PsuI RGATCY 1 cut(s) 880
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
SaqAI TTAA 4 cut(s) 6, 342, 389, 578
SatI GCNGC 3 cut(s) 404, 480, 900
Sau3AI GATC 3 cut(s) 142, 745, 880
Sau96I GGNCC 5 cut(s) 274, 310, 353, 562, 704
ScaI AGTACT 1 cut(s) 595
ScrFI CCNGG 4 cut(s) 134, 278, 531, 546
SduI GDGCHC 5 cut(s) 160, 204, 819, 874, 996
SfaNI GCATC 1 cut(s) 946
Sfr274I CTCGAG 1 cut(s) 420
SinI GGWCC 3 cut(s) 310, 562, 704
SlaI CTCGAG 1 cut(s) 420
SmlI CTYRAG 3 cut(s) 420, 460, 950
SmoI CTYRAG 3 cut(s) 420, 460, 950
SpeI ACTAGT 1 cut(s) 394
SphI GCATGC 1 cut(s) 977
Sse9I AATT 7 cut(s) 228, 247, 281, 575, 756, 790, 801
SsiI CCGC 3 cut(s) 316, 622, 977
SspMI CTAG 6 cut(s) 233, 264, 395, 518, 699, 875
StyD4I CCNGG 4 cut(s) 132, 276, 529, 544
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 440, 675
TaiI ACGT 1 cut(s) 293
TaqI TCGA 3 cut(s) 421, 694, 744
TasI AATT 7 cut(s) 228, 247, 281, 575, 756, 790, 801
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 4 cut(s) 329, 654, 892, 1003
Tru1I TTAA 4 cut(s) 6, 342, 389, 578
Tru9I TTAA 4 cut(s) 6, 342, 389, 578
TscAI CASTG 2 cut(s) 680, 971
TseFI GTSAC 2 cut(s) 434, 962
TseI GCWGC 3 cut(s) 403, 479, 899
Tsp45I GTSAC 2 cut(s) 434, 962
TspDTI ATGAA 2 cut(s) 795, 884
TspRI CASTG 2 cut(s) 680, 971
VpaK11BI GGWCC 3 cut(s) 310, 562, 704
VspI ATTAAT 1 cut(s) 578
XapI RAATTY 4 cut(s) 228, 281, 756, 790
XbaI TCTAGA 2 cut(s) 517, 874
XceI RCATGY 2 cut(s) 947, 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 507
XhoI CTCGAG 1 cut(s) 420
XspI CTAG 6 cut(s) 233, 264, 395, 518, 699, 875
ZrmI AGTACT 1 cut(s) 595
Zsp2I ATGCAT 1 cut(s) 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.