Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006510

Physical Location & Seq

Genomic Coordinates Forward (+)

27694494 .. 27696965

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1214000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCGCACAGTGCAATTAATTTCACTTGGTGCTGGCAAGTGCCTTCGCCCATGAGCGATAGGTCTCAGTGGGTGGTTACTAATCTTCGACCAACCAATTCTCTTGGTTCATCACCATCAACCTTTTCATGGGTGTTTGATCTGAAGGGAATCACTGAAATGTATAAATCTTATGAAGAAACAAATTTATGGAAAATTGTTGAAGATGTGCCTCGGGGTGTCCATGTGAACTTTTTGAAAGCAGAAAGGAGCTTGCACGGATGGGCTTTAGGAATCTCCAGAGAATTCATGCGGCTGAGGAAGCAGGTGGAGTGGAAATGCATGTCCTTGAGGATGCAGGCCACTGGGTATGTCCATGCTGATAATCCGGACGGGCTGTTTAGGATCCTTTCCTCTTCTTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

136

Amino Acids

15.72

Weight (kDa)

9.03

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10030
fragaria_vesca	FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210
malus_domestica	MD08G1214000.v1.1 MD08G1214300.v1.1 MD15G1397200.v1.1
prunus_persica	Prupe.1G546000_v2.0.a1
pyrus_communis	pycom08g18360 pycom08g18370 pycom08g18410 pycom15g35690
rosa_chinensis	RchiOBHm_Chr7g0231591
rosa_laevigata	RLG00000001408
rosa_multiflora	Rmu_co8305357.1_g000001 Rmu_sc0001377.1_g000024
rosa_roxburghii	Rroxscaffold_3G00229070
rosa_rugosa	Rorug07G0267300
rosa_samantha	Rh7AG422100 Rh7BG396400 Rh7CG442300 Rh7DG414400
rosa_wichuraiana	Rw7G034800 Rw7G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	2 cut(s)	379, 392
AcsI	RAATTY	2 cut(s)	184, 284
AcuI	CTGAAG	1 cut(s)	164
AdeI	CACNNNGTG	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	203, 238
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	379, 392
Ama87I	CYCGRG	1 cut(s)	213
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	1 cut(s)	339
ApoI	RAATTY	2 cut(s)	184, 284
AseI	ATTAAT	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	124, 255
BcoDI	GTCTC	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	266, 339
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	80, 287
BseNI	ACTGG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	139, 384
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	2 cut(s)	79, 288
BspEI	TCCGGA	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	386
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	379, 392
BspTNI	GGTCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	139, 384
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	35, 254, 339
BstDEI	CTNAG	2 cut(s)	66, 296
BstF5I	GGATG	2 cut(s)	266, 339
BstKTI	GATC	2 cut(s)	142, 387
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	139, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	266, 339
BtsIMutI	CAGTG	4 cut(s)	16, 74, 153, 342
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	3 cut(s)	35, 254, 339
CviAII	CATG	6 cut(s)	52, 129, 224, 289, 322, 356
CviJI	RGCY	5 cut(s)	252, 266, 295, 341, 376
CviKI_1	RGCY	5 cut(s)	252, 266, 295, 341, 376
DdeI	CTNAG	2 cut(s)	66, 296
DpnI	GATC	2 cut(s)	141, 386
DpnII	GATC	2 cut(s)	139, 384
DraIII	CACNNNGTG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	284
EcoT22I	ATGCAT	1 cut(s)	323
FaeI	CATG	6 cut(s)	55, 132, 227, 292, 325, 359
FatI	CATG	6 cut(s)	51, 128, 223, 288, 321, 355
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	273, 346
Fsp4HI	GCNGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	6 cut(s)	55, 132, 227, 292, 325, 359
HinfI	GANTC	2 cut(s)	150, 273
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	279, 368
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	54, 139
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	4 cut(s)	14, 256, 321, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	66, 296
Hsp92II	CATG	6 cut(s)	55, 132, 227, 292, 325, 359
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	139, 384
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	6 cut(s)	19, 290, 292, 323, 330, 381
LweI	GCATC	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	141, 386
MboI	GATC	2 cut(s)	139, 384
MboII	GAAGA	4 cut(s)	77, 188, 215, 387
MflI	RGATCY	1 cut(s)	384
MluCI	AATT	6 cut(s)	15, 19, 97, 184, 195, 284
MnlI	CCTC	4 cut(s)	222, 291, 324, 403
Mph1103I	ATGCAT	1 cut(s)	323
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	2 cut(s)	139, 384
NlaIII	CATG	6 cut(s)	55, 132, 227, 292, 325, 359
NlaIV	GGNNCC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	1 cut(s)	325
PaqCI	CACCTGC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	150, 273
PkrI	GCNGC	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	139, 384
SetI	ASST	4 cut(s)	65, 125, 254, 309
SfaNI	GCATC	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	6 cut(s)	15, 19, 97, 184, 195, 284
SsiI	CCGC	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	88
TasI	AATT	6 cut(s)	15, 19, 97, 184, 195, 284
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	2 cut(s)	150, 273
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	4 cut(s)	16, 74, 160, 349
TspDTI	ATGAA	4 cut(s)	99, 117, 189, 277
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	4 cut(s)	16, 74, 160, 349
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	2 cut(s)	184, 284
XceI	RCATGY	1 cut(s)	325
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.