Rw7G034870

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006510
Physical Location & Seq
Forward (+)
51946444 .. 51955737
9294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034870.1

Sequence Viewer

Length: 1098 bp
ATGGGTCCTCAGAGACGATTAAGTATTTATGTTGGATACGAATCCCCAACAATTATACGCTATTTGGAAACCTTGACAGGCGATCTCTCTACCGCTAGATTTGCGGATTATCAACCAAGCAAACCTTTGTGGCTACCTCCTCGAACCACTCAGAGATCATTGTTCTACATGAGGCGGCAACAACTCATGCACCATTTCGTCTTTGACTTGGCACAAGGGGGAGTAAAATGGAGTTCTGTTATGGACAAGTCATTGCCCGAGCCCCCAACAGCTGTTTTTCTGCATGGAATTCTAGGTAGCAGGAAAAATTGGGGAACATTCACTAGGAGATTGGCACAGGAATTTCCAACGTGGCAGTTCCTATTGGTGGACCTGCGGTGTCATGGTGATTCAGCCTCAGTTAAGAAAACAGGCCCCCATAATGTTTCTTCAACCGCTCTTGATGTCTTAAAACTAGTTCGGCAGCTTAGAATAACACCTCGAGTTTTGGTTGGTCACAGTTTCGGGGGGAAAGTTGCCTTGAGCATGGTGGAGCAAGCTGCAAAGCCTCTTGCACGACCAGTCAGAGTTTGGGTTCTAGACGCTACTCCTGGAAAGGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCTGTCCTAAGTACTCTACCCAAAGAGGTTTCCTCAAAGCGGGATGTTGTGGGAGCTTTAGTTCAAAAAGGATTCTCCAAAGATGTGGCACAGTGGGTGGTTACTAATCTTCGACCTAGTGGTCCTCTTGGTTCAACACCATCCACCTTCTCTTGGACATTCGATCTCAATGGAATTTCTGAAATGTATCAATCTTATGAAAAACAAATTTATGAAGATGTGCCCCGAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCTCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTTGAGGAGGGAGGTGGAGTTGAAATGCATGTCCTTGAGGATGCAGGTCACTGGGTGCATGCGGATAATCCGGATGGGCTCTTTAGGATTCTTTTCTTCTTCTTTCCAGTGAGTCAAAACTTCAGGGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

365

Amino Acids

41.09

Weight (kDa)

9.06

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 92 - 349 3.3e-20 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 92 - 345 1.4e-11 alpha/beta hydrolase fold
Hydrolase_4 PF12146 92 - 193 4e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 762
Acc36I ACCTGC 2 cut(s) 381, 998
AccBSI CCGCTC 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 1033
AciI CCGC 7 cut(s) 93, 104, 175, 376, 435, 682, 1025
AcsI RAATTY 4 cut(s) 288, 341, 816, 849
AcuI CTGAAG 1 cut(s) 1069
AdeI CACNNNGTG 1 cut(s) 1018
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 3 cut(s) 367, 681, 795
AgsI TTSAA 5 cut(s) 432, 707, 777, 892, 986
AhlI ACTAGT 1 cut(s) 454
AjnI CCWGG 2 cut(s) 589, 604
AloI GAACNNNNNNTCC 2 cut(s) 687, 719
AluBI AGCT 7 cut(s) 272, 466, 539, 698, 906, 958, 1093
AluI AGCT 7 cut(s) 272, 466, 539, 698, 906, 958, 1093
Alw26I GTCTC 1 cut(s) 7
Ama87I CYCGRG 3 cut(s) 257, 480, 867
Aor13HI TCCGGA 1 cut(s) 1033
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 3 cut(s) 463, 539, 947
ApoI RAATTY 4 cut(s) 288, 341, 816, 849
AseI ATTAAT 1 cut(s) 638
AspS9I GGNCC 5 cut(s) 5, 370, 413, 622, 764
AsuHPI GGTGA 1 cut(s) 398
AvaI CYCGRG 3 cut(s) 257, 480, 867
AvaII GGWCC 4 cut(s) 5, 370, 622, 764
BaeGI GKGCMC 1 cut(s) 867
BanII GRGCYC 3 cut(s) 264, 922, 1044
BbvCI CCTCAGC 1 cut(s) 951
BbvI GCAGC 3 cut(s) 475, 526, 934
BccI CCATC 5 cut(s) 608, 633, 790, 909, 1031
BciT130I CCWGG 2 cut(s) 591, 606
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 7
BcuI ACTAGT 1 cut(s) 454
BfaI CTAG 7 cut(s) 96, 293, 324, 455, 578, 759, 923
BfuAI ACCTGC 2 cut(s) 381, 998
BfuI GTATCC 1 cut(s) 29
BglII AGATCT 1 cut(s) 928
BisI GCNGC 4 cut(s) 176, 464, 540, 948
BlsI GCNGC 4 cut(s) 177, 465, 541, 949
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 2 cut(s) 591, 606
Bme18I GGWCC 4 cut(s) 5, 370, 622, 764
BmeT110I CYCGRG 3 cut(s) 257, 480, 867
BmgT120I GGNCC 5 cut(s) 5, 370, 413, 622, 764
BmiI GGNNCC 2 cut(s) 6, 415
BmrFI CCNGG 2 cut(s) 591, 606
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 1 cut(s) 994
BmuI ACTGGG 1 cut(s) 1024
BplI GAGNNNNNCTC 2 cut(s) 659, 691
BpmI CTGGAG 1 cut(s) 917
Bpu10I CCTNAGC 1 cut(s) 951
BpuEI CTTGAG 2 cut(s) 541, 1019
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 868
BsaWI WCCGGW 1 cut(s) 1033
BsaXI ACNNNNNCTCC 4 cut(s) 687, 717, 966, 996
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 681, 795
Bse1I ACTGG 3 cut(s) 560, 1019, 1070
Bse3DI GCAATG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 1033
BseBI CCWGG 2 cut(s) 591, 606
BseDI CCNNGG 1 cut(s) 868
BseGI GGATG 6 cut(s) 619, 625, 691, 782, 1009, 1042
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 3 cut(s) 367, 681, 795
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 4 cut(s) 23, 164, 411, 942
BseNI ACTGG 3 cut(s) 560, 1019, 1070
BseRI GAGGAG 3 cut(s) 129, 968, 983
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 3 cut(s) 475, 526, 934
BshFI GGCC 1 cut(s) 414
BsiHKCI CYCGRG 3 cut(s) 257, 480, 867
BsiSI CCGG 1 cut(s) 1034
BslI CCNNNNNNNGG 3 cut(s) 367, 681, 795
BsmAI GTCTC 1 cut(s) 7
BsmBI CGTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 414
BsoBI CYCGRG 3 cut(s) 257, 480, 867
Bsp1286I GDGCHC 4 cut(s) 264, 867, 922, 1044
Bsp13I TCCGGA 1 cut(s) 1033
Bsp143I GATC 4 cut(s) 82, 155, 805, 928
BspACI CCGC 7 cut(s) 93, 104, 175, 376, 435, 682, 1025
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 4 cut(s) 22, 163, 410, 943
BspEI TCCGGA 1 cut(s) 1033
BspLI GGNNCC 2 cut(s) 6, 415
BspMI ACCTGC 2 cut(s) 381, 998
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 251
BsrI ACTGG 3 cut(s) 560, 1019, 1070
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 4 cut(s) 82, 155, 805, 928
Bst2UI CCWGG 2 cut(s) 591, 606
Bst4CI ACNGT 2 cut(s) 500, 735
BstC8I GCNNGC 4 cut(s) 537, 908, 960, 1023
BstDEI CTNAG 6 cut(s) 9, 150, 397, 467, 650, 951
BstF5I GGATG 6 cut(s) 619, 625, 691, 782, 1009, 1042
BstKTI GATC 4 cut(s) 85, 158, 808, 931
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 4 cut(s) 82, 155, 805, 928
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 2 cut(s) 591, 606
BstNSI RCATGY 2 cut(s) 995, 1025
BstSCI CCNGG 2 cut(s) 589, 604
BstSLI GKGCMC 1 cut(s) 867
BstV1I GCAGC 3 cut(s) 475, 526, 934
BstX2I RGATCY 1 cut(s) 928
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 1 cut(s) 928
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 414
BtsCI GGATG 6 cut(s) 619, 625, 691, 782, 1009, 1042
BtsIMutI CAGTG 3 cut(s) 740, 1012, 1077
BveI ACCTGC 2 cut(s) 381, 998
Cac8I GCNNGC 4 cut(s) 537, 908, 960, 1023
Cfr13I GGNCC 5 cut(s) 5, 370, 413, 622, 764
CseI GACGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 654
CviAII CATG 9 cut(s) 169, 187, 284, 383, 526, 878, 944, 992, 1022
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 6 cut(s) 9, 150, 397, 467, 650, 951
DpnI GATC 4 cut(s) 84, 157, 807, 930
DpnII GATC 4 cut(s) 82, 155, 805, 928
DraIII CACNNNGTG 1 cut(s) 1018
DrdI GACNNNNNNGTC 1 cut(s) 762
DseDI GACNNNNNNGTC 1 cut(s) 762
Eco24I GRGCYC 3 cut(s) 264, 922, 1044
Eco47I GGWCC 4 cut(s) 5, 370, 622, 764
Eco57I CTGAAG 1 cut(s) 1069
Eco88I CYCGRG 3 cut(s) 257, 480, 867
EcoO109I RGGNCCY 2 cut(s) 5, 413
EcoRI GAATTC 1 cut(s) 288
EcoRII CCWGG 2 cut(s) 589, 604
EcoT22I ATGCAT 1 cut(s) 993
EcoT38I GRGCYC 3 cut(s) 264, 922, 1044
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 9 cut(s) 172, 190, 287, 386, 529, 881, 947, 995, 1025
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 9 cut(s) 168, 186, 283, 382, 525, 877, 943, 991, 1021
FauI CCCGC 1 cut(s) 675
Fnu4HI GCNGC 4 cut(s) 176, 464, 540, 948
FokI GGATG 6 cut(s) 612, 626, 698, 769, 1016, 1049
FriOI GRGCYC 3 cut(s) 264, 922, 1044
Fsp4HI GCNGC 4 cut(s) 176, 464, 540, 948
FspBI CTAG 7 cut(s) 96, 293, 324, 455, 578, 759, 923
GluI GCNGC 4 cut(s) 176, 464, 540, 948
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 1 cut(s) 414
HapII CCGG 1 cut(s) 1034
HgaI GACGC 1 cut(s) 590
Hin1II CATG 9 cut(s) 172, 190, 287, 386, 529, 881, 947, 995, 1025
HinfI GANTC 6 cut(s) 41, 389, 714, 940, 1051, 1075
HpaII CCGG 1 cut(s) 1034
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 370, 883
Hpy188I TCNGA 4 cut(s) 12, 153, 566, 823
Hpy188III TCNNGA 6 cut(s) 440, 578, 889, 923, 934, 1034
Hpy8I GTNNAC 2 cut(s) 370, 883
HpyAV CCTTC 1 cut(s) 799
HpyCH4III ACNGT 2 cut(s) 500, 735
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 8 cut(s) 190, 283, 542, 554, 910, 991, 1007, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 6 cut(s) 9, 150, 397, 467, 650, 951
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 9 cut(s) 172, 190, 287, 386, 529, 881, 947, 995, 1025
Kpn2I TCCGGA 1 cut(s) 1033
Kzo9I GATC 4 cut(s) 82, 155, 805, 928
LmnI GCTCC 5 cut(s) 532, 695, 903, 955, 1090
Lsp1109I GCAGC 3 cut(s) 475, 526, 934
LweI GCATC 1 cut(s) 994
MaeI CTAG 7 cut(s) 96, 293, 324, 455, 578, 759, 923
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 494, 742, 1010
MalI GATC 4 cut(s) 84, 157, 807, 930
MbiI CCGCTC 1 cut(s) 437
MboI GATC 4 cut(s) 82, 155, 805, 928
MboII GAAGA 6 cut(s) 420, 743, 869, 938, 1051, 1054
MflI RGATCY 1 cut(s) 928
MhlI GDGCHC 4 cut(s) 264, 867, 922, 1044
MluCI AATT 7 cut(s) 51, 288, 307, 341, 635, 816, 849
MlyI GAGTC 1 cut(s) 1084
MmeI TCCRAC 2 cut(s) 13, 371
Mph1103I ATGCAT 1 cut(s) 993
MroI TCCGGA 1 cut(s) 1033
MseI TTAA 4 cut(s) 20, 402, 449, 638
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 1034
MspR9I CCNGG 2 cut(s) 591, 606
MvaI CCWGG 2 cut(s) 591, 606
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 4 cut(s) 82, 155, 805, 928
NlaIII CATG 9 cut(s) 172, 190, 287, 386, 529, 881, 947, 995, 1025
NlaIV GGNNCC 2 cut(s) 6, 415
NmuCI GTSAC 2 cut(s) 494, 1010
NsiI ATGCAT 1 cut(s) 993
NspI RCATGY 2 cut(s) 995, 1025
PaeI GCATGC 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 480
PfeI GAWTC 5 cut(s) 41, 389, 714, 940, 1051
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 4 cut(s) 177, 465, 541, 949
PleI GAGTC 1 cut(s) 1083
PpsI GAGTC 1 cut(s) 1083
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 2 cut(s) 589, 604
PspGI CCWGG 2 cut(s) 589, 604
PspN4I GGNNCC 2 cut(s) 6, 415
PspPI GGNCC 5 cut(s) 5, 370, 413, 622, 764
PspPPI RGGWCCY 1 cut(s) 5
PspXI VCTCGAGB 1 cut(s) 480
PsuI RGATCY 1 cut(s) 928
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
SaqAI TTAA 4 cut(s) 20, 402, 449, 638
SatI GCNGC 4 cut(s) 176, 464, 540, 948
Sau3AI GATC 4 cut(s) 82, 155, 805, 928
Sau96I GGNCC 5 cut(s) 5, 370, 413, 622, 764
ScaI AGTACT 1 cut(s) 655
SchI GAGTC 1 cut(s) 1084
ScrFI CCNGG 2 cut(s) 591, 606
SduI GDGCHC 4 cut(s) 264, 867, 922, 1044
SfaNI GCATC 1 cut(s) 994
Sfr274I CTCGAG 1 cut(s) 480
SinI GGWCC 4 cut(s) 5, 370, 622, 764
SlaI CTCGAG 1 cut(s) 480
SmlI CTYRAG 3 cut(s) 480, 520, 998
SmoI CTYRAG 3 cut(s) 480, 520, 998
SpeI ACTAGT 1 cut(s) 454
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 7 cut(s) 51, 288, 307, 341, 635, 816, 849
SsiI CCGC 7 cut(s) 93, 104, 175, 376, 435, 682, 1025
SspMI CTAG 7 cut(s) 96, 293, 324, 455, 578, 759, 923
StyD4I CCNGG 2 cut(s) 589, 604
TaaI ACNGT 2 cut(s) 500, 735
TaiI ACGT 1 cut(s) 353
TaqI TCGA 4 cut(s) 142, 481, 754, 804
TasI AATT 7 cut(s) 51, 288, 307, 341, 635, 816, 849
TatI WGTACW 1 cut(s) 653
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 5 cut(s) 41, 389, 714, 940, 1051
Tru1I TTAA 4 cut(s) 20, 402, 449, 638
Tru9I TTAA 4 cut(s) 20, 402, 449, 638
TscAI CASTG 3 cut(s) 740, 1019, 1077
TseFI GTSAC 2 cut(s) 494, 1010
TseI GCWGC 3 cut(s) 463, 539, 947
Tsp45I GTSAC 2 cut(s) 494, 1010
TspDTI ATGAA 3 cut(s) 855, 870, 932
TspRI CASTG 3 cut(s) 740, 1019, 1077
VpaK11BI GGWCC 4 cut(s) 5, 370, 622, 764
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 4 cut(s) 288, 341, 816, 849
XbaI TCTAGA 2 cut(s) 577, 922
XceI RCATGY 2 cut(s) 995, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XhoI CTCGAG 1 cut(s) 480
XspI CTAG 7 cut(s) 96, 293, 324, 455, 578, 759, 923
ZrmI AGTACT 1 cut(s) 655
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.