Rw7G034800

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006510
Physical Location & Seq
Reverse (-)
51699478 .. 51706805
7328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034800.1

Sequence Viewer

Length: 1110 bp
ATGGCGGCGATTTCGAATCTCGCCGGATGCGGTCTCGCCGCCGGGAGGAGCAGCGCAGTCAGTTTCGGAGAGAGGAGGTACTCCGAGCTCCGTTCACTTCCCGGTTTGAATTCTCGGATCTCTTTTCCCTCTAAGACTCAGTTAGCTGTTGGCCACTTGGGCAAGGCTGACAAAAGACTTGGTGTTCGTATGGCATTAGTCAATGACAGGGTTGCACAAAGTGGAAGTTTGGCCAAGGCTTCTGAAATCCTGGCATTTGATCTTGTTCAAGGGGCACTTGTAAAATGGAGTTCTGTTATGGACAAGTCATTGCCCGAGCCCCCAACAGCTGTTTTTCTGCATGGAATTCTAGGTAGCAGGAAAAATTGGGGTACGAACATCACTAGGAGATTGGCACAGGAATTTCCAACGTTCCTATTGGTGGACCTGCGGTGTCATGGTGATTCAGCCTCAGTTAAGAAAACAGGCCCCCATAATGTTTCTTCAACCGCTCTTGATGTCTTAAAACTAGTTCGGCAGCTTAGAATAACACCTCGAGTTTTGGTTGGTCACATTGCCTTGAGCATGGTGGAGCAAGCTGCAAAGCCTCTTGCACGACCAGTCAGAGTTTGGGTTCTAGACGCTACTCCTGGAAAGGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCTGTCCTAAGTACTCTACCCAAAGAGGTTTCCTCAAAGCGGGATGTTGTGGGAGCTTTAGTTCAAAAAGGATTCTCCAAAGATGTGGCACAGTGGGTGGTTACTAATCTTCGACCTAGTGGTCCTCTTGGTTCAACACCATCCACCTTCTCTTGGACATTCGATCTCAATGGAATTTCTGAAATGTATCAATCTTATGAAGAAACAAATTTATGGAAAATTGTAGAAGATGTGCCCCGAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCTCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTTGAGGAGGGAGGTGGAGTTGAAATGCATGTCCTTTATGTGCATGCGGATAATCCGGATGGGCTCTTTAGGATTCTTTCTTCTTCTTTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

369

Amino Acids

40.14

Weight (kDa)

9.3

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 111 - 361 3.7e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 801
Acc36I ACCTGC 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 491
AccIII TCCGGA 1 cut(s) 1069
AciI CCGC 7 cut(s) 5, 30, 39, 430, 489, 721, 1061
AclI AACGTT 1 cut(s) 410
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 2 cut(s) 151, 231
AcsI RAATTY 5 cut(s) 109, 345, 401, 855, 889
AdeI CACNNNGTG 1 cut(s) 221
AfaI GTAC 3 cut(s) 80, 373, 694
AfiI CCNNNNNNNGG 4 cut(s) 45, 421, 720, 834
AgsI TTSAA 7 cut(s) 109, 269, 486, 746, 816, 943, 1037
AhlI ACTAGT 1 cut(s) 508
AjnI CCWGG 3 cut(s) 249, 628, 643
AloI GAACNNNNNNTCC 2 cut(s) 726, 758
AluBI AGCT 8 cut(s) 88, 146, 329, 520, 578, 737, 957, 1009
AluI AGCT 8 cut(s) 88, 146, 329, 520, 578, 737, 957, 1009
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 3 cut(s) 314, 534, 918
Aor13HI TCCGGA 1 cut(s) 1069
AoxI GGCC 3 cut(s) 151, 231, 466
ApeKI GCWGC 4 cut(s) 51, 517, 578, 998
ApoI RAATTY 5 cut(s) 109, 345, 401, 855, 889
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
AseI ATTAAT 1 cut(s) 677
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 4 cut(s) 424, 467, 661, 803
AsuC2I CCSGG 2 cut(s) 43, 102
AsuHPI GGTGA 1 cut(s) 452
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 3 cut(s) 314, 534, 918
AvaII GGWCC 3 cut(s) 424, 661, 803
BaeGI GKGCMC 2 cut(s) 277, 918
BalI TGGCCA 2 cut(s) 153, 233
BanII GRGCYC 4 cut(s) 90, 321, 973, 1080
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 1002
BbvI GCAGC 4 cut(s) 63, 529, 565, 985
BccI CCATC 5 cut(s) 647, 672, 829, 960, 1067
BciT130I CCWGG 3 cut(s) 251, 630, 645
BcnI CCSGG 2 cut(s) 43, 102
BcoDI GTCTC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 6 cut(s) 350, 384, 509, 617, 798, 974
BfuAI ACCTGC 1 cut(s) 435
BglI GCCNNNNNGGC 1 cut(s) 159
BglII AGATCT 1 cut(s) 979
BisI GCNGC 6 cut(s) 6, 39, 52, 518, 579, 999
BlsI GCNGC 6 cut(s) 7, 40, 53, 519, 580, 1000
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 5 cut(s) 43, 102, 251, 630, 645
Bme18I GGWCC 3 cut(s) 424, 661, 803
BmeT110I CYCGRG 3 cut(s) 314, 534, 918
BmgT120I GGNCC 4 cut(s) 424, 467, 661, 803
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 5 cut(s) 43, 102, 251, 630, 645
BmsI GCATC 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 698, 730
BpmI CTGGAG 1 cut(s) 968
Bpu10I CCTNAGC 1 cut(s) 1002
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 580
BpuMI CCSGG 2 cut(s) 43, 102
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 234, 919
BsaWI WCCGGW 1 cut(s) 1069
BsaXI ACNNNNNCTCC 4 cut(s) 726, 756, 1017, 1047
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 421, 720, 834
Bse1I ACTGG 2 cut(s) 599, 1105
Bse3DI GCAATG 2 cut(s) 308, 552
BseAI TCCGGA 1 cut(s) 1069
BseBI CCWGG 3 cut(s) 251, 630, 645
BseDI CCNNGG 2 cut(s) 234, 919
BseGI GGATG 6 cut(s) 32, 658, 664, 730, 821, 1078
BseLI CCNNNNNNNGG 4 cut(s) 45, 421, 720, 834
BseMI GCAATG 2 cut(s) 308, 552
BseMII CTCAG 3 cut(s) 152, 465, 993
BseNI ACTGG 2 cut(s) 599, 1105
BseRI GAGGAG 4 cut(s) 61, 88, 1019, 1034
BseSI GKGCMC 2 cut(s) 277, 918
BseXI GCAGC 4 cut(s) 63, 529, 565, 985
BshFI GGCC 3 cut(s) 153, 233, 468
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 3 cut(s) 314, 534, 918
BsiSI CCGG 4 cut(s) 24, 42, 102, 1070
BslI CCNNNNNNNGG 4 cut(s) 45, 421, 720, 834
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 3 cut(s) 153, 233, 468
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 3 cut(s) 314, 534, 918
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 6 cut(s) 90, 277, 321, 918, 973, 1080
Bsp13I TCCGGA 1 cut(s) 1069
Bsp143I GATC 4 cut(s) 117, 259, 844, 979
BspACI CCGC 7 cut(s) 5, 30, 39, 430, 489, 721, 1061
BspANI GGCC 3 cut(s) 153, 233, 468
BspCNI CTCAG 3 cut(s) 151, 464, 994
BspEI TCCGGA 1 cut(s) 1069
BspLI GGNNCC 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 491
BsrDI GCAATG 2 cut(s) 308, 552
BsrI ACTGG 2 cut(s) 599, 1105
BssECI CCNNGG 2 cut(s) 234, 919
BssMI GATC 4 cut(s) 117, 259, 844, 979
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 3 cut(s) 251, 630, 645
Bst4CI ACNGT 1 cut(s) 774
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 576, 959, 1011, 1059
BstDEI CTNAG 6 cut(s) 132, 138, 451, 521, 689, 1002
BstF5I GGATG 6 cut(s) 32, 658, 664, 730, 821, 1078
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 120, 262, 847, 982
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 4 cut(s) 117, 259, 844, 979
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 3 cut(s) 251, 630, 645
BstNSI RCATGY 2 cut(s) 1046, 1061
BstSCI CCNGG 5 cut(s) 41, 100, 249, 628, 643
BstSLI GKGCMC 2 cut(s) 277, 918
BstV1I GCAGC 4 cut(s) 63, 529, 565, 985
BstX2I RGATCY 2 cut(s) 117, 979
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 2 cut(s) 117, 979
BsuRI GGCC 3 cut(s) 153, 233, 468
BtsCI GGATG 6 cut(s) 32, 658, 664, 730, 821, 1078
BtsIMutI CAGTG 1 cut(s) 779
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 4 cut(s) 576, 959, 1011, 1059
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 4 cut(s) 424, 467, 661, 803
CseI GACGC 1 cut(s) 629
Csp6I GTAC 3 cut(s) 79, 372, 693
CviAII CATG 7 cut(s) 341, 437, 565, 929, 995, 1043, 1058
CviQI GTAC 3 cut(s) 79, 372, 693
DdeI CTNAG 6 cut(s) 132, 138, 451, 521, 689, 1002
DpnI GATC 4 cut(s) 119, 261, 846, 981
DpnII GATC 4 cut(s) 117, 259, 844, 979
DraIII CACNNNGTG 1 cut(s) 221
DrdI GACNNNNNNGTC 1 cut(s) 801
DseDI GACNNNNNNGTC 1 cut(s) 801
EaeI YGGCCR 2 cut(s) 151, 231
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 4 cut(s) 90, 321, 973, 1080
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 3 cut(s) 424, 661, 803
Eco53kI GAGCTC 1 cut(s) 88
Eco88I CYCGRG 3 cut(s) 314, 534, 918
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 467
EcoRI GAATTC 2 cut(s) 109, 345
EcoRII CCWGG 3 cut(s) 249, 628, 643
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 1044
EcoT38I GRGCYC 4 cut(s) 90, 321, 973, 1080
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 7 cut(s) 344, 440, 568, 932, 998, 1046, 1061
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 7 cut(s) 340, 436, 564, 928, 994, 1042, 1057
FauI CCCGC 1 cut(s) 714
Fnu4HI GCNGC 6 cut(s) 6, 39, 52, 518, 579, 999
FokI GGATG 6 cut(s) 39, 651, 665, 737, 808, 1085
FriOI GRGCYC 4 cut(s) 90, 321, 973, 1080
Fsp4HI GCNGC 6 cut(s) 6, 39, 52, 518, 579, 999
FspBI CTAG 6 cut(s) 350, 384, 509, 617, 798, 974
GlaI GCGC 1 cut(s) 55
GluI GCNGC 6 cut(s) 6, 39, 52, 518, 579, 999
GsuI CTGGAG 1 cut(s) 968
HaeIII GGCC 3 cut(s) 153, 233, 468
HapII CCGG 4 cut(s) 24, 42, 102, 1070
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 56
Hin1II CATG 7 cut(s) 344, 440, 568, 932, 998, 1046, 1061
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 6 cut(s) 16, 136, 443, 753, 991, 1087
HpaII CCGG 4 cut(s) 24, 42, 102, 1070
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 3 cut(s) 95, 424, 934
Hpy188I TCNGA 6 cut(s) 68, 85, 117, 244, 605, 862
Hpy188III TCNNGA 6 cut(s) 494, 617, 940, 974, 985, 1070
Hpy8I GTNNAC 3 cut(s) 95, 424, 934
HpyAV CCTTC 1 cut(s) 838
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 7 cut(s) 215, 340, 581, 593, 961, 1042, 1057
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 6 cut(s) 132, 138, 451, 521, 689, 1002
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 7 cut(s) 344, 440, 568, 932, 998, 1046, 1061
HspAI GCGC 1 cut(s) 54
Kpn2I TCCGGA 1 cut(s) 1069
Kzo9I GATC 4 cut(s) 117, 259, 844, 979
LmnI GCTCC 6 cut(s) 48, 93, 571, 734, 954, 1006
Lsp1109I GCAGC 4 cut(s) 63, 529, 565, 985
LweI GCATC 1 cut(s) 17
MaeI CTAG 6 cut(s) 350, 384, 509, 617, 798, 974
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 548, 781
MalI GATC 4 cut(s) 119, 261, 846, 981
MbiI CCGCTC 1 cut(s) 491
MboI GATC 4 cut(s) 117, 259, 844, 979
MboII GAAGA 7 cut(s) 474, 782, 893, 920, 989, 1086, 1089
MflI RGATCY 2 cut(s) 117, 979
MhlI GDGCHC 6 cut(s) 90, 277, 321, 918, 973, 1080
MlsI TGGCCA 2 cut(s) 153, 233
MluCI AATT 8 cut(s) 109, 345, 364, 401, 674, 855, 889, 900
MluNI TGGCCA 2 cut(s) 153, 233
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 431
Mox20I TGGCCA 2 cut(s) 153, 233
Mph1103I ATGCAT 1 cut(s) 1044
MroI TCCGGA 1 cut(s) 1069
MscI TGGCCA 2 cut(s) 153, 233
MseI TTAA 3 cut(s) 456, 503, 677
Msp20I TGGCCA 2 cut(s) 153, 233
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 4 cut(s) 24, 42, 102, 1070
MspR9I CCNGG 5 cut(s) 43, 102, 251, 630, 645
MvaI CCWGG 3 cut(s) 251, 630, 645
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 43, 102
NdeII GATC 4 cut(s) 117, 259, 844, 979
NlaIII CATG 7 cut(s) 344, 440, 568, 932, 998, 1046, 1061
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 1044
NspI RCATGY 2 cut(s) 1046, 1061
NspV TTCGAA 1 cut(s) 14
PaeI GCATGC 1 cut(s) 1061
PaeR7I CTCGAG 1 cut(s) 534
PfeI GAWTC 5 cut(s) 16, 443, 753, 991, 1087
PfoI TCCNGGA 1 cut(s) 628
PkrI GCNGC 6 cut(s) 7, 40, 53, 519, 580, 1000
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PshBI ATTAAT 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 410
Psp6I CCWGG 3 cut(s) 249, 628, 643
PspGI CCWGG 3 cut(s) 249, 628, 643
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 4 cut(s) 424, 467, 661, 803
PspXI VCTCGAGB 1 cut(s) 534
PsuI RGATCY 2 cut(s) 117, 979
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 3 cut(s) 80, 373, 694
RsaNI GTAC 3 cut(s) 79, 372, 693
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 3 cut(s) 456, 503, 677
SatI GCNGC 6 cut(s) 6, 39, 52, 518, 579, 999
Sau3AI GATC 4 cut(s) 117, 259, 844, 979
Sau96I GGNCC 4 cut(s) 424, 467, 661, 803
ScaI AGTACT 1 cut(s) 694
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 5 cut(s) 43, 102, 251, 630, 645
SduI GDGCHC 6 cut(s) 90, 277, 321, 918, 973, 1080
SfaNI GCATC 1 cut(s) 17
Sfr274I CTCGAG 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 3 cut(s) 424, 661, 803
SlaI CTCGAG 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 534, 559
SmoI CTYRAG 2 cut(s) 534, 559
SpeI ACTAGT 1 cut(s) 508
SphI GCATGC 1 cut(s) 1061
Sse9I AATT 8 cut(s) 109, 345, 364, 401, 674, 855, 889, 900
SsiI CCGC 7 cut(s) 5, 30, 39, 430, 489, 721, 1061
SspMI CTAG 6 cut(s) 350, 384, 509, 617, 798, 974
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 5 cut(s) 41, 100, 249, 628, 643
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 774
TaiI ACGT 1 cut(s) 413
TaqI TCGA 4 cut(s) 14, 535, 793, 843
TasI AATT 8 cut(s) 109, 345, 364, 401, 674, 855, 889, 900
TatI WGTACW 1 cut(s) 692
TauI GCSGC 2 cut(s) 8, 41
TfiI GAWTC 5 cut(s) 16, 443, 753, 991, 1087
Tru1I TTAA 3 cut(s) 456, 503, 677
Tru9I TTAA 3 cut(s) 456, 503, 677
TscAI CASTG 1 cut(s) 779
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 4 cut(s) 51, 517, 578, 998
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 2 cut(s) 894, 983
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 779
VpaK11BI GGWCC 3 cut(s) 424, 661, 803
VspI ATTAAT 1 cut(s) 677
XapI RAATTY 5 cut(s) 109, 345, 401, 855, 889
XbaI TCTAGA 2 cut(s) 616, 973
XceI RCATGY 2 cut(s) 1046, 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 534
XspI CTAG 6 cut(s) 350, 384, 509, 617, 798, 974
ZrmI AGTACT 1 cut(s) 694
Zsp2I ATGCAT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.