Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006510

Physical Location & Seq

Genomic Coordinates Reverse (-)

43811471 .. 43818550

Gene Structure 7080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG396400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAACAGTGGAAATTGCTATTACTGTCTGGGGAATTCGGGGCCTCAAGACACTTTGACTCAGTTAGCTGTTGGCCACTTGGGCAAGGCTGACAAAAGACTTGGTGTTCGTATGGCATTAGTCAATGACAGGGTTGCACAAAGTGGAAGTTTGGCCAAGGCTTCTGAAATTCTGGCATTTGATCTTGTTCAAGGGGCACTTGTAAAATGGAGTTCTGTTATGGACAAGTCATTGCCCGAGCCCCCAACAGCTGTTTTTCTGCATGGAATTGTAGGTAGCAGGAAAAATTGGGGAACATTCACTAGGAGATTGGCACAGGAATTTCCAACGTGGCAGTTCCTATTGGTGGACCTGCGGTGTCATGGTGATTCAGCCTCAGTTAAGAAAACAGGCCCCCATAATGTTTCTTCAACTGCTCTTGATGTCTTAAAACTAGTTCGGCAGCTTAGAATAACACCTCGAGTTTTGGTTGGTCACAGTTTCGGGGGGAAAGTTGCCTTGAGCATGGTGGAGCAAGCTGCAAAGCCTCTTGCACGACCAGTCAGAGTTTGGGTTCTAGACGCTACTCCTGGAAAGGTTCGTCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCTGTCTTAAGTACTCTACCCAAAGAGGTTTCCGCAAAGCGGGATGTTGTGGAAGCTTTAGTTCAAAAAGGATTCTCCAAAGATGTGGCACAGTGGGTGGTTACTAATCTTCGACCTAGTGGGCCTCTTGGTTCAACACCATCCACCTTCTCTTGGACATTCGATCTCAATGGAATTTCTGAAATGTATCAATCTTATGAAGAAACAAATTTATGGAAAATTGTAGAAGATGTGCCCCGAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCCCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTTGAGGAGGGAGGTGGAGTTGAAATGCATGTCCTTGAGGATGCAGGTCACTGGGTGCATGCGGATAATCCAGATGGGCTCTTTAAGATTCTTTCTTCTTCTTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

354

Amino Acids

38.74

Weight (kDa)

6.87

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	85 - 346	3e-20	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	85 - 189	1.2e-10	alpha/beta hydrolase fold
Hydrolase_4	PF12146	85 - 186	1.9e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10030
fragaria_vesca	FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210 FvH4_5g33210
malus_domestica	MD08G1214000.v1.1 MD08G1214300.v1.1 MD15G1397200.v1.1
prunus_persica	Prupe.1G546000_v2.0.a1
pyrus_communis	pycom08g18360 pycom08g18370 pycom08g18410 pycom15g35690
rosa_chinensis	RchiOBHm_Chr7g0231591
rosa_laevigata	RLG00000001408
rosa_multiflora	Rmu_co8305357.1_g000001 Rmu_sc0001377.1_g000024
rosa_roxburghii	Rroxscaffold_3G00229070
rosa_rugosa	Rorug07G0267300
rosa_samantha	Rh7AG422100 Rh7BG396400 Rh7CG442300 Rh7DG414400
rosa_wichuraiana	Rw7G034800 Rw7G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	360, 989
AciI	CCGC	4 cut(s)	355, 654, 661, 1016
AcoI	YGGCCR	2 cut(s)	73, 153
AcsI	RAATTY	5 cut(s)	34, 168, 320, 795, 829
AdeI	CACNNNGTG	2 cut(s)	143, 1009
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	3 cut(s)	346, 660, 774
AflII	CTTAAG	1 cut(s)	628
AgsI	TTSAA	6 cut(s)	191, 411, 686, 756, 883, 977
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	568, 583
AluBI	AGCT	7 cut(s)	68, 251, 445, 518, 677, 897, 949
AluI	AGCT	7 cut(s)	68, 251, 445, 518, 677, 897, 949
Ama87I	CYCGRG	3 cut(s)	236, 459, 858
AoxI	GGCC	6 cut(s)	41, 73, 153, 391, 743, 909
ApaI	GGGCCC	1 cut(s)	913
ApeKI	GCWGC	3 cut(s)	442, 518, 938
ApoI	RAATTY	5 cut(s)	34, 168, 320, 795, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AseI	ATTAAT	1 cut(s)	617
AspS9I	GGNCC	7 cut(s)	41, 349, 392, 601, 743, 909, 910
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	3 cut(s)	236, 459, 858
AvaII	GGWCC	2 cut(s)	349, 601
BaeGI	GKGCMC	3 cut(s)	199, 858, 913
BalI	TGGCCA	2 cut(s)	75, 155
BanII	GRGCYC	3 cut(s)	243, 913, 1035
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	3 cut(s)	454, 505, 925
BccI	CCATC	5 cut(s)	587, 612, 769, 900, 1022
BciT130I	CCWGG	2 cut(s)	570, 585
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	5 cut(s)	303, 434, 557, 738, 914
BfrI	CTTAAG	1 cut(s)	628
BfuAI	ACCTGC	2 cut(s)	360, 989
BglI	GCCNNNNNGGC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	919
BisI	GCNGC	3 cut(s)	443, 519, 939
BlsI	GCNGC	3 cut(s)	444, 520, 940
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	570, 585
Bme18I	GGWCC	2 cut(s)	349, 601
BmeT110I	CYCGRG	3 cut(s)	236, 459, 858
BmgT120I	GGNCC	7 cut(s)	41, 349, 392, 601, 743, 909, 910
BmiI	GGNNCC	3 cut(s)	42, 394, 911
BmrFI	CCNGG	2 cut(s)	570, 585
BmrI	ACTGGG	1 cut(s)	1015
BmsI	GCATC	1 cut(s)	985
BmuI	ACTGGG	1 cut(s)	1015
BpmI	CTGGAG	1 cut(s)	908
Bpu10I	CCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	3 cut(s)	30, 520, 1010
BsaJI	CCNNGG	2 cut(s)	156, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 660, 774
Bse1I	ACTGG	3 cut(s)	539, 1010, 1060
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	570, 585
BseDI	CCNNGG	2 cut(s)	156, 859
BseGI	GGATG	5 cut(s)	598, 604, 670, 761, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	346, 660, 774
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	3 cut(s)	74, 390, 933
BseNI	ACTGG	3 cut(s)	539, 1010, 1060
BseRI	GAGGAG	2 cut(s)	959, 974
BseSI	GKGCMC	3 cut(s)	199, 858, 913
BseXI	GCAGC	3 cut(s)	454, 505, 925
BshFI	GGCC	6 cut(s)	43, 75, 155, 393, 745, 911
BsiHKCI	CYCGRG	3 cut(s)	236, 459, 858
BslI	CCNNNNNNNGG	3 cut(s)	346, 660, 774
BsnI	GGCC	6 cut(s)	43, 75, 155, 393, 745, 911
BsoBI	CYCGRG	3 cut(s)	236, 459, 858
Bsp120I	GGGCCC	1 cut(s)	909
Bsp1286I	GDGCHC	5 cut(s)	199, 243, 858, 913, 1035
Bsp143I	GATC	3 cut(s)	181, 784, 919
BspACI	CCGC	4 cut(s)	355, 654, 661, 1016
BspANI	GGCC	6 cut(s)	43, 75, 155, 393, 745, 911
BspCNI	CTCAG	3 cut(s)	73, 389, 934
BspLI	GGNNCC	3 cut(s)	42, 394, 911
BspMI	ACCTGC	2 cut(s)	360, 989
BspTI	CTTAAG	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	539, 1010, 1060
BssECI	CCNNGG	2 cut(s)	156, 859
BssMI	GATC	3 cut(s)	181, 784, 919
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	570, 585
Bst4CI	ACNGT	4 cut(s)	8, 26, 479, 714
BstAFI	CTTAAG	1 cut(s)	628
BstC8I	GCNNGC	4 cut(s)	516, 899, 951, 1014
BstDEI	CTNAG	4 cut(s)	60, 376, 446, 942
BstF5I	GGATG	5 cut(s)	598, 604, 670, 761, 1000
BstKTI	GATC	3 cut(s)	184, 787, 922
BstMBI	GATC	3 cut(s)	181, 784, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	2 cut(s)	570, 585
BstNSI	RCATGY	2 cut(s)	986, 1016
BstSCI	CCNGG	2 cut(s)	568, 583
BstSLI	GKGCMC	3 cut(s)	199, 858, 913
BstV1I	GCAGC	3 cut(s)	454, 505, 925
BstX2I	RGATCY	1 cut(s)	919
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	919
BsuRI	GGCC	6 cut(s)	43, 75, 155, 393, 745, 911
BtsCI	GGATG	5 cut(s)	598, 604, 670, 761, 1000
BtsIMutI	CAGTG	3 cut(s)	13, 719, 1003
BveI	ACCTGC	2 cut(s)	360, 989
Cac8I	GCNNGC	4 cut(s)	516, 899, 951, 1014
Cfr13I	GGNCC	7 cut(s)	41, 349, 392, 601, 743, 909, 910
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	7 cut(s)	263, 362, 505, 869, 935, 983, 1013
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	4 cut(s)	60, 376, 446, 942
DpnI	GATC	3 cut(s)	183, 786, 921
DpnII	GATC	3 cut(s)	181, 784, 919
DraIII	CACNNNGTG	2 cut(s)	143, 1009
EaeI	YGGCCR	2 cut(s)	73, 153
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	3 cut(s)	243, 913, 1035
Eco47I	GGWCC	2 cut(s)	349, 601
Eco88I	CYCGRG	3 cut(s)	236, 459, 858
EcoO109I	RGGNCCY	3 cut(s)	41, 392, 910
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	568, 583
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	984
EcoT38I	GRGCYC	3 cut(s)	243, 913, 1035
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	7 cut(s)	266, 365, 508, 872, 938, 986, 1016
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	7 cut(s)	262, 361, 504, 868, 934, 982, 1012
FauI	CCCGC	1 cut(s)	654
Fnu4HI	GCNGC	3 cut(s)	443, 519, 939
FokI	GGATG	5 cut(s)	591, 605, 677, 748, 1007
FriOI	GRGCYC	3 cut(s)	243, 913, 1035
Fsp4HI	GCNGC	3 cut(s)	443, 519, 939
FspBI	CTAG	5 cut(s)	303, 434, 557, 738, 914
GluI	GCNGC	3 cut(s)	443, 519, 939
GsuI	CTGGAG	1 cut(s)	908
HaeIII	GGCC	6 cut(s)	43, 75, 155, 393, 745, 911
HgaI	GACGC	1 cut(s)	569
Hin1II	CATG	7 cut(s)	266, 365, 508, 872, 938, 986, 1016
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	5 cut(s)	58, 368, 693, 931, 1042
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	349, 874
Hpy188I	TCNGA	3 cut(s)	166, 545, 802
Hpy188III	TCNNGA	6 cut(s)	47, 419, 557, 880, 925, 1025
Hpy8I	GTNNAC	2 cut(s)	349, 874
HpyAV	CCTTC	1 cut(s)	778
HpyCH4III	ACNGT	4 cut(s)	8, 26, 479, 714
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	8 cut(s)	137, 262, 521, 533, 901, 982, 998, 1012
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	4 cut(s)	60, 376, 446, 942
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	7 cut(s)	266, 365, 508, 872, 938, 986, 1016
Kzo9I	GATC	3 cut(s)	181, 784, 919
LmnI	GCTCC	3 cut(s)	511, 894, 946
Lsp1109I	GCAGC	3 cut(s)	454, 505, 925
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	5 cut(s)	303, 434, 557, 738, 914
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	3 cut(s)	473, 721, 1001
MalI	GATC	3 cut(s)	183, 786, 921
MboI	GATC	3 cut(s)	181, 784, 919
MboII	GAAGA	7 cut(s)	399, 722, 833, 860, 929, 1041, 1044
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	5 cut(s)	199, 243, 858, 913, 1035
MlsI	TGGCCA	2 cut(s)	75, 155
MluNI	TGGCCA	2 cut(s)	75, 155
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	350
Mox20I	TGGCCA	2 cut(s)	75, 155
Mph1103I	ATGCAT	1 cut(s)	984
MscI	TGGCCA	2 cut(s)	75, 155
MseI	TTAA	5 cut(s)	381, 428, 617, 629, 1038
Msp20I	TGGCCA	2 cut(s)	75, 155
MspA1I	CMGCKG	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	628
MspR9I	CCNGG	2 cut(s)	570, 585
MvaI	CCWGG	2 cut(s)	570, 585
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	3 cut(s)	181, 784, 919
NlaIII	CATG	7 cut(s)	266, 365, 508, 872, 938, 986, 1016
NlaIV	GGNNCC	3 cut(s)	42, 394, 911
NmuCI	GTSAC	2 cut(s)	473, 1001
NsiI	ATGCAT	1 cut(s)	984
NspI	RCATGY	2 cut(s)	986, 1016
PaeI	GCATGC	1 cut(s)	1016
PaeR7I	CTCGAG	1 cut(s)	459
PfeI	GAWTC	4 cut(s)	368, 693, 931, 1042
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	3 cut(s)	444, 520, 940
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	568, 583
PspGI	CCWGG	2 cut(s)	568, 583
PspN4I	GGNNCC	3 cut(s)	42, 394, 911
PspOMI	GGGCCC	1 cut(s)	909
PspPI	GGNCC	7 cut(s)	41, 349, 392, 601, 743, 909, 910
PspXI	VCTCGAGB	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	381, 428, 617, 629, 1038
SatI	GCNGC	3 cut(s)	443, 519, 939
Sau3AI	GATC	3 cut(s)	181, 784, 919
Sau96I	GGNCC	7 cut(s)	41, 349, 392, 601, 743, 909, 910
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	570, 585
SduI	GDGCHC	5 cut(s)	199, 243, 858, 913, 1035
SfaNI	GCATC	1 cut(s)	985
Sfr274I	CTCGAG	1 cut(s)	459
SinI	GGWCC	2 cut(s)	349, 601
SlaI	CTCGAG	1 cut(s)	459
SmlI	CTYRAG	5 cut(s)	45, 459, 499, 628, 989
SmoI	CTYRAG	5 cut(s)	45, 459, 499, 628, 989
SpeI	ACTAGT	1 cut(s)	433
SphI	GCATGC	1 cut(s)	1016
SsiI	CCGC	4 cut(s)	355, 654, 661, 1016
SspMI	CTAG	5 cut(s)	303, 434, 557, 738, 914
StyD4I	CCNGG	2 cut(s)	568, 583
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	8, 26, 479, 714
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	3 cut(s)	460, 733, 783
TatI	WGTACW	1 cut(s)	632
TfiI	GAWTC	4 cut(s)	368, 693, 931, 1042
Tru1I	TTAA	5 cut(s)	381, 428, 617, 629, 1038
Tru9I	TTAA	5 cut(s)	381, 428, 617, 629, 1038
TscAI	CASTG	3 cut(s)	13, 719, 1010
TseFI	GTSAC	2 cut(s)	473, 1001
TseI	GCWGC	3 cut(s)	442, 518, 938
Tsp45I	GTSAC	2 cut(s)	473, 1001
TspDTI	ATGAA	3 cut(s)	17, 834, 923
TspRI	CASTG	3 cut(s)	13, 719, 1010
Vha464I	CTTAAG	1 cut(s)	628
VpaK11BI	GGWCC	2 cut(s)	349, 601
VspI	ATTAAT	1 cut(s)	617
XapI	RAATTY	5 cut(s)	34, 168, 320, 795, 829
XbaI	TCTAGA	1 cut(s)	556
XceI	RCATGY	2 cut(s)	986, 1016
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XhoI	CTCGAG	1 cut(s)	459
XspI	CTAG	5 cut(s)	303, 434, 557, 738, 914
ZrmI	AGTACT	1 cut(s)	634
Zsp2I	ATGCAT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.