Rroxscaffold_3G00229070

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006510
Physical Location & Seq
Forward (+)
13595241 .. 13603270
8030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229070.1

Sequence Viewer

Length: 561 bp
ATGGTGGAGCAAGCTGCAAAGCCTCTTGCACGACCAGTCAGAGTTTGGGTTCTAGACGCTACTCCTGGAAAGGTTCATCCTGGTGGGGATGGGGAGGACCATCCAGCAGAATTAATATCCGTCCTAAGTACTCTACCCAAAGAGGTTTCCTCAAAGCGGGATGTTGTGGAAGCTTTAGTTCAAAAAGGATTCTCCAAAGATGTGGCACAGTGGGTGGTTACTAATCTTCGACCTAGTGGTCCTCTTGGTTCAACACCATCCACCTTCTCTTGGACATTCGATCTCAATGGAATTTCTGAAATGTATCAATCATATGAAGAAACAAATTTATGGAAAATTGTAGAAGATGTGCCCCGAGGTGTCCATGTGAACTTCTTGAAAGCAGAAAGGAGCTTGCACAGATGGGCTCTAGAAGATCTCCAGAGGATTCATGCTGCTGAGGAGCTTGCTGTTGAGGAGGGAGGTGGAGTTGAAATGCATGTCCTTGAGGATGCAGGTCACTGGGTGCATGCGGATAATCCAGATGGGCTCTTTAGGATTCTTTCTTCTTCTTTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

186

Amino Acids

20.63

Weight (kDa)

5.11

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 485
AciI CCGC 2 cut(s) 157, 512
AcsI RAATTY 2 cut(s) 291, 325
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 156, 270
AgsI TTSAA 4 cut(s) 182, 252, 379, 473
AjnI CCWGG 2 cut(s) 64, 79
AluBI AGCT 4 cut(s) 14, 173, 393, 445
AluI AGCT 4 cut(s) 14, 173, 393, 445
Ama87I CYCGRG 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 14, 434
ApoI RAATTY 2 cut(s) 291, 325
AseI ATTAAT 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 97, 239
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 2 cut(s) 97, 239
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 2 cut(s) 409, 531
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 421
BccI CCATC 5 cut(s) 83, 108, 265, 396, 518
BciT130I CCWGG 2 cut(s) 66, 81
BfaI CTAG 3 cut(s) 53, 234, 410
BfuAI ACCTGC 1 cut(s) 485
BglII AGATCT 1 cut(s) 415
BisI GCNGC 2 cut(s) 15, 435
BlsI GCNGC 2 cut(s) 16, 436
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 66, 81
Bme18I GGWCC 2 cut(s) 97, 239
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 97, 239
BmrFI CCNGG 2 cut(s) 66, 81
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 511
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 270
Bse1I ACTGG 3 cut(s) 35, 506, 556
BseBI CCWGG 2 cut(s) 66, 81
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 6 cut(s) 76, 94, 100, 166, 257, 496
BseLI CCNNNNNNNGG 2 cut(s) 156, 270
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 3 cut(s) 35, 506, 556
BseRI GAGGAG 2 cut(s) 455, 470
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 156, 270
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 3 cut(s) 354, 409, 531
Bsp143I GATC 2 cut(s) 280, 415
BspACI CCGC 2 cut(s) 157, 512
BspCNI CTCAG 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 485
BsrI ACTGG 3 cut(s) 35, 506, 556
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 280, 415
Bst2UI CCWGG 2 cut(s) 66, 81
Bst4CI ACNGT 1 cut(s) 210
BstC8I GCNNGC 4 cut(s) 12, 395, 447, 510
BstDEI CTNAG 2 cut(s) 125, 438
BstF5I GGATG 6 cut(s) 76, 94, 100, 166, 257, 496
BstKTI GATC 2 cut(s) 283, 418
BstMBI GATC 2 cut(s) 280, 415
BstNI CCWGG 2 cut(s) 66, 81
BstNSI RCATGY 2 cut(s) 482, 512
BstSCI CCNGG 2 cut(s) 64, 79
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 415
BtsCI GGATG 6 cut(s) 76, 94, 100, 166, 257, 496
BtsIMutI CAGTG 2 cut(s) 215, 499
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 4 cut(s) 12, 395, 447, 510
Cfr13I GGNCC 2 cut(s) 97, 239
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 129
CviAII CATG 4 cut(s) 365, 431, 479, 509
CviJI RGCY 7 cut(s) 14, 22, 173, 393, 407, 445, 529
CviKI_1 RGCY 7 cut(s) 14, 22, 173, 393, 407, 445, 529
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 2 cut(s) 125, 438
DpnI GATC 2 cut(s) 282, 417
DpnII GATC 2 cut(s) 280, 415
DraIII CACNNNGTG 1 cut(s) 505
DrdI GACNNNNNNGTC 1 cut(s) 237
DseDI GACNNNNNNGTC 1 cut(s) 237
Eco24I GRGCYC 2 cut(s) 409, 531
Eco47I GGWCC 2 cut(s) 97, 239
Eco88I CYCGRG 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 64, 79
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 2 cut(s) 409, 531
FaeI CATG 4 cut(s) 368, 434, 482, 512
FaiI YATR 7 cut(s) 313, 315, 331, 366, 432, 480, 510
FatI CATG 4 cut(s) 364, 430, 478, 508
FauI CCCGC 1 cut(s) 150
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 15, 435
FokI GGATG 6 cut(s) 63, 87, 101, 173, 244, 503
FriOI GRGCYC 2 cut(s) 409, 531
Fsp4HI GCNGC 2 cut(s) 15, 435
FspBI CTAG 3 cut(s) 53, 234, 410
GluI GCNGC 2 cut(s) 15, 435
GsuI CTGGAG 1 cut(s) 404
HgaI GACGC 1 cut(s) 65
Hin1II CATG 4 cut(s) 368, 434, 482, 512
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 189, 427, 538
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 41, 298
Hpy188III TCNNGA 5 cut(s) 53, 376, 410, 421, 521
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 6 cut(s) 17, 29, 397, 478, 494, 508
HpyF3I CTNAG 2 cut(s) 125, 438
Hsp92II CATG 4 cut(s) 368, 434, 482, 512
Kzo9I GATC 2 cut(s) 280, 415
LmnI GCTCC 3 cut(s) 7, 390, 442
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 481
MaeI CTAG 3 cut(s) 53, 234, 410
MaeIII GTNAC 2 cut(s) 217, 497
MalI GATC 2 cut(s) 282, 417
MboI GATC 2 cut(s) 280, 415
MboII GAAGA 6 cut(s) 218, 329, 356, 425, 537, 540
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 3 cut(s) 354, 409, 531
MluCI AATT 4 cut(s) 110, 291, 325, 336
Mph1103I ATGCAT 1 cut(s) 480
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 66, 81
MvaI CCWGG 2 cut(s) 66, 81
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 280, 415
NlaIII CATG 4 cut(s) 368, 434, 482, 512
NmuCI GTSAC 1 cut(s) 497
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 2 cut(s) 482, 512
PaeI GCATGC 1 cut(s) 512
PfeI GAWTC 3 cut(s) 189, 427, 538
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 16, 436
PshBI ATTAAT 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 64, 79
PspGI CCWGG 2 cut(s) 64, 79
PspPI GGNCC 2 cut(s) 97, 239
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 15, 435
Sau3AI GATC 2 cut(s) 280, 415
Sau96I GGNCC 2 cut(s) 97, 239
ScaI AGTACT 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 66, 81
SduI GDGCHC 3 cut(s) 354, 409, 531
SfaNI GCATC 1 cut(s) 481
SinI GGWCC 2 cut(s) 97, 239
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SphI GCATGC 1 cut(s) 512
Sse9I AATT 4 cut(s) 110, 291, 325, 336
SsiI CCGC 2 cut(s) 157, 512
SspMI CTAG 3 cut(s) 53, 234, 410
StyD4I CCNGG 2 cut(s) 64, 79
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 229, 279
TasI AATT 4 cut(s) 110, 291, 325, 336
TatI WGTACW 1 cut(s) 128
TfiI GAWTC 3 cut(s) 189, 427, 538
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 2 cut(s) 215, 506
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 2 cut(s) 14, 434
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 3 cut(s) 65, 330, 419
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 2 cut(s) 215, 506
VpaK11BI GGWCC 2 cut(s) 97, 239
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 2 cut(s) 291, 325
XbaI TCTAGA 2 cut(s) 52, 409
XceI RCATGY 2 cut(s) 482, 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XspI CTAG 3 cut(s) 53, 234, 410
ZrmI AGTACT 1 cut(s) 130
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.