Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Forward (+)

24863401 .. 24865851

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34192.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAAGACTATGAGGATGCTTTGATAGAGATACAAAATCAGCTATCCAAAGGAATATCCTTGAATGATTTAAAAAGTTATCATGCTGGCAACTATGAAGTAGTGGTCCTTTCGAAAATGGTTAGGGGGGAGTATCACATCATGGTTGCTACAAACATTAGAGGTGCTACAGTGCTTCACTGGGGTGTTTCAAAAATATCCCCTGGGGAATGGTTGGTTCCTCCACCCGAGATTCGACCTAAAAACTCAAATGTCGTTCCTGGAGCATGCCAGACTTATTTTAACGAGATGTCAATTGGTAACGGAGCCTTTCAGGTTGTAGATATCAATTTTCAGCAAAGCAATTTCATTGGTATCCAATTTGTGATATGGTCTAGCGGGTCCTCGTGGATAAAAGATAATGGCTCCAACTTCTATGTAGCTATAATACCCATGAATTCGAGTGGAAAGGTTGATGGGGCTGGGGAAGAAATTGACAAATGGTTACCTGATGAAATCTCTCGTAGAGAGAAAGAGGCTGAGAGATCATTAATGCACAGATTCAACATTGCTACGGAGCTCACAGAACGCTGCAAAAGTGCTCATTGGCATGTTGGTATGGTTGAGGTTCATGTCGTGCAGGCACCTCACTTGGAACAAAAACTACAATTGAGATTAGTGAAGCTCAAGATAGGTTTACCAGTCTACTACAGAAAATATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

235

Amino Acids

26.54

Weight (kDa)

7.1

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7067	PF23229	2 - 26	9.7e-06	Alpha-glucan water dikinase, DUF7067
Ig_N_CWD1	PF23166	30 - 141	9.4e-23	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	64, 192, 544
AjnI	CCWGG	2 cut(s)	202, 259
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	43, 422, 559, 664
AluI	AGCT	4 cut(s)	43, 422, 559, 664
Alw21I	GWGCWC	2 cut(s)	561, 583
Ama87I	CYCGRG	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	570
ApoI	RAATTY	1 cut(s)	436
AseI	ATTAAT	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	106, 381
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	106, 381
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	561
BauI	CACGAG	1 cut(s)	385
Bbv12I	GWGCWC	2 cut(s)	561, 583
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	2 cut(s)	204, 261
BciVI	GTATCC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	2 cut(s)	168, 688
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	1 cut(s)	571
BlsI	GCNGC	1 cut(s)	572
Bme1390I	CCNGG	2 cut(s)	204, 261
Bme18I	GGWCC	2 cut(s)	106, 381
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	106, 381
BmiI	GGNNCC	5 cut(s)	219, 307, 382, 406, 624
BmrFI	CCNGG	2 cut(s)	204, 261
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	202, 203
Bse1I	ACTGG	2 cut(s)	185, 680
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	204, 261
BseDI	CCNNGG	2 cut(s)	202, 203
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	185, 680
BseXI	GCAGC	1 cut(s)	557
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	638
BshNI	GGYRCC	1 cut(s)	622
BsiHKAI	GWGCWC	2 cut(s)	561, 583
BsiHKCI	CYCGRG	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	561, 583
Bsp143I	GATC	1 cut(s)	524
BspACI	CCGC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	5 cut(s)	219, 307, 382, 406, 624
BspT104I	TTCGAA	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	185, 680
BssECI	CCNNGG	2 cut(s)	202, 203
BssMI	GATC	1 cut(s)	524
BssSI	CACGAG	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	385
Bst2UI	CCWGG	2 cut(s)	204, 261
Bst4CI	ACNGT	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	88, 268, 621
BstDEI	CTNAG	1 cut(s)	519
BstEII	GGTNACC	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	524
BstNI	CCWGG	2 cut(s)	204, 261
BstNSI	RCATGY	2 cut(s)	270, 593
BstPI	GGTNACC	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	202, 259
BstSFI	CTRYAG	2 cut(s)	168, 688
BstV1I	GCAGC	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	177, 178
Cac8I	GCNNGC	3 cut(s)	88, 268, 621
Cfr13I	GGNCC	2 cut(s)	106, 381
CviAII	CATG	6 cut(s)	83, 142, 267, 433, 590, 611
CviJI	RGCY	8 cut(s)	43, 308, 405, 422, 461, 518, 559, 664
CviKI_1	RGCY	8 cut(s)	43, 308, 405, 422, 461, 518, 559, 664
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
DraI	TTTAAA	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	559
Eco24I	GRGCYC	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	106, 381
Eco53kI	GAGCTC	1 cut(s)	559
Eco88I	CYCGRG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	381
EcoO65I	GGTNACC	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	202, 259
EcoRV	GATATC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	561
FaeI	CATG	6 cut(s)	86, 145, 270, 436, 593, 614
FatI	CATG	6 cut(s)	82, 141, 266, 432, 589, 610
FauI	CCCGC	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	571
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	1 cut(s)	571
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	571
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	282
Hin1II	CATG	6 cut(s)	86, 145, 270, 436, 593, 614
HinfI	GANTC	2 cut(s)	232, 540
Hpy166II	GTNNAC	2 cut(s)	677, 685
Hpy188III	TCNNGA	1 cut(s)	667
Hpy8I	GTNNAC	2 cut(s)	677, 685
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	535, 573, 619
HpyF3I	CTNAG	1 cut(s)	519
Hsp92II	CATG	6 cut(s)	86, 145, 270, 436, 593, 614
Kzo9I	GATC	1 cut(s)	524
LmnI	GCTCC	4 cut(s)	263, 305, 410, 556
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	299, 483
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MboII	GAAGA	1 cut(s)	479
MfeI	CAATTG	2 cut(s)	294, 647
MhlI	GDGCHC	2 cut(s)	561, 583
MluCI	AATT	7 cut(s)	294, 328, 343, 359, 436, 471, 647
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	7 cut(s)	7, 155, 231, 394, 508, 598, 636
MseI	TTAA	3 cut(s)	71, 282, 530
MslI	CAYNNNNRTG	2 cut(s)	183, 588
MspR9I	CCNGG	2 cut(s)	204, 261
MunI	CAATTG	2 cut(s)	294, 647
MvaI	CCWGG	2 cut(s)	204, 261
NdeII	GATC	1 cut(s)	524
NlaIII	CATG	6 cut(s)	86, 145, 270, 436, 593, 614
NlaIV	GGNNCC	5 cut(s)	219, 307, 382, 406, 624
NspI	RCATGY	2 cut(s)	270, 593
NspV	TTCGAA	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	232, 540
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	202, 259
PspEI	GGTNACC	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	202, 259
PspN4I	GGNNCC	5 cut(s)	219, 307, 382, 406, 624
PspPI	GGNCC	2 cut(s)	106, 381
PspPPI	RGGWCCY	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
RseI	CAYNNNNRTG	2 cut(s)	183, 588
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	3 cut(s)	71, 282, 530
SatI	GCNGC	1 cut(s)	571
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	2 cut(s)	106, 381
ScrFI	CCNGG	2 cut(s)	204, 261
SduI	GDGCHC	2 cut(s)	561, 583
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	2 cut(s)	168, 688
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	2 cut(s)	106, 381
SmiMI	CAYNNNNRTG	2 cut(s)	183, 588
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	7 cut(s)	294, 328, 343, 359, 436, 471, 647
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	202, 259
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	113, 235, 440
TasI	AATT	7 cut(s)	294, 328, 343, 359, 436, 471, 647
TfiI	GAWTC	2 cut(s)	232, 540
Tru1I	TTAA	3 cut(s)	71, 282, 530
Tru9I	TTAA	3 cut(s)	71, 282, 530
TscAI	CASTG	2 cut(s)	177, 185
TseI	GCWGC	1 cut(s)	570
TspDTI	ATGAA	6 cut(s)	17, 111, 337, 449, 507, 599
TspGWI	ACGGA	2 cut(s)	318, 569
TspRI	CASTG	2 cut(s)	177, 185
VpaK11BI	GGWCC	2 cut(s)	106, 381
VspI	ATTAAT	1 cut(s)	530
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	2 cut(s)	270, 593
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.