Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Reverse (-)

10843446 .. 10853976

Gene Structure 10531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTTTCAGAAGTTACTAGAATCTCATATTGAGCTTCGCCCTCTTCTGATCACCTCCCTTAGAAGATTAAAAGATATGCTGTTCCTTGATCTTGCTTTGGCTTCAGCTGTCAAAACAACTGTGGAAAGGGGACTCACAGATCTACTTTTTTCTAACCCACAGATTGATACTTTTTCTGAGGAGTTAATAAGGGCTGGATCAGAGACTATTCTGTCTACTCTCATCAATCGTTTTGACCCCATTCTGAGAAAAGCGGCTAACTTAGGCCATTGGAAGGTTATCAGCCCAGTTGAAGTGCAGGGTTTGATAACTTTGGTTAATGAGCTAATTAGTATCCAGAACAAAGTCTATAAAAAGCCAACCATTCTAATTGCAACTACGGTAACTGGGGAAGAGGAGATTCCAGATGGAGTAGTTGCTGTCCTGACACCTGATACGCTAGATGTTCTATCTCATGTCTCTATAAGACCAATAAATAGCAAGGTATGCTTTGCCACCTGCTTTGATACGAATATTCTCAGGGATCTCAGGTTGAAAGAAGCCAAACCAATGTCAATAGAAGTAAAGTTGGCAAATATTATTATCAGTGACAGCAGTAGGTCCATCTTTTCATGCAAGTCTTTTGCTACTCAATCCATTCATCAGGGATTTACTTTAAAAAAGAAAATTGTCTGCGGTAGATGTGCTATTTCAGTTGAGGGGTTCACCAATGAGATGGTTGGTGCAAAATCTTGCAACATAAGATTTTTGAGAGGAAGGGTGCCAGCATGGATTAAAATTCCTATATCAGTTGCCATACCATTTGGAGCCTTTGATAAGGTCCTATTAGAAGATGTTAATAAGAGCCATCAACTTAAGAGCATAATGAAGAGTTCAAGAATACCTTGGCCTGGTGATGAAGGTGACGAGAGGTGGAATCAAGCTTGGTGTGCAATAAAGAAGATAGTTAAGGGCTTGGGAGAGACTTTGGTGGGTGCATATCCTGGACGAGCCATGAGCTTCATAACCCAAAAAGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

340

Amino Acids

37.77

Weight (kDa)

9.27

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWD1_pHisD	PF22973	91 - 200	7.1e-46	Alpha-glucan water dikinase, phosphohistidine-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
AasI	GACNNNNNNGTC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	760
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	2 cut(s)	254, 675
AclWI	GGATC	2 cut(s)	205, 531
AcsI	RAATTY	1 cut(s)	777
AcuI	CTGAAG	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	274, 890
AflII	CTTAAG	1 cut(s)	854
AgsI	TTSAA	3 cut(s)	293, 535, 876
AjnI	CCWGG	2 cut(s)	889, 982
AluBI	AGCT	5 cut(s)	34, 107, 325, 923, 999
AluI	AGCT	5 cut(s)	34, 107, 325, 923, 999
Alw26I	GTCTC	3 cut(s)	197, 463, 956
AlwI	GGATC	2 cut(s)	205, 531
AoxI	GGCC	2 cut(s)	265, 887
ApoI	RAATTY	1 cut(s)	777
AspS9I	GGNCC	2 cut(s)	600, 820
AsuHPI	GGTGA	4 cut(s)	43, 697, 905, 914
AvaII	GGWCC	2 cut(s)	600, 820
BanI	GGYRCC	1 cut(s)	760
BccI	CCATC	4 cut(s)	401, 611, 709, 855
BciT130I	CCWGG	2 cut(s)	891, 984
BciVI	GTATCC	1 cut(s)	344
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	3 cut(s)	197, 463, 956
BfaI	CTAG	2 cut(s)	17, 440
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	891, 984
Bme18I	GGWCC	2 cut(s)	600, 820
BmgT120I	GGNCC	2 cut(s)	600, 820
BmiI	GGNNCC	2 cut(s)	762, 808
BmrFI	CCNGG	2 cut(s)	891, 984
BmrI	ACTGGG	2 cut(s)	281, 396
BmuI	ACTGGG	2 cut(s)	281, 396
BsaJI	CCNNGG	1 cut(s)	884
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 890
Bse1I	ACTGG	2 cut(s)	287, 391
BseBI	CCWGG	2 cut(s)	891, 984
BseDI	CCNNGG	1 cut(s)	884
BseLI	CCNNNNNNNGG	2 cut(s)	274, 890
BseMII	CTCAG	4 cut(s)	168, 236, 532, 541
BseNI	ACTGG	2 cut(s)	287, 391
BseRI	GAGGAG	2 cut(s)	194, 410
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	267, 889
BshNI	GGYRCC	1 cut(s)	760
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	274, 890
BsmAI	GTCTC	3 cut(s)	197, 463, 956
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	267, 889
Bsp143I	GATC	5 cut(s)	48, 88, 139, 197, 523
BspACI	CCGC	2 cut(s)	254, 675
BspANI	GGCC	2 cut(s)	267, 889
BspCNI	CTCAG	4 cut(s)	169, 237, 531, 540
BspLI	GGNNCC	2 cut(s)	762, 808
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	205, 531
BspT107I	GGYRCC	1 cut(s)	760
BspTI	CTTAAG	1 cut(s)	854
BsrI	ACTGG	2 cut(s)	287, 391
BssECI	CCNNGG	1 cut(s)	884
BssMI	GATC	5 cut(s)	48, 88, 139, 197, 523
BssT1I	CCWWGG	1 cut(s)	884
Bst2UI	CCWGG	2 cut(s)	891, 984
Bst4CI	ACNGT	2 cut(s)	121, 382
Bst6I	CTCTTC	3 cut(s)	48, 387, 863
BstAFI	CTTAAG	1 cut(s)	854
BstAPI	GCANNNNNTGC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	6 cut(s)	59, 177, 245, 262, 518, 527
BstKTI	GATC	5 cut(s)	51, 91, 142, 200, 526
BstMAI	GTCTC	3 cut(s)	197, 463, 956
BstMBI	GATC	5 cut(s)	48, 88, 139, 197, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 929
BstNI	CCWGG	2 cut(s)	891, 984
BstSCI	CCNGG	2 cut(s)	889, 982
BstX2I	RGATCY	2 cut(s)	139, 523
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	2 cut(s)	139, 523
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	267, 889
BtsIMutI	CAGTG	1 cut(s)	592
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	600, 820
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	4 cut(s)	455, 612, 768, 994
DdeI	CTNAG	6 cut(s)	59, 177, 245, 262, 518, 527
DpnI	GATC	5 cut(s)	50, 90, 141, 199, 525
DpnII	GATC	5 cut(s)	48, 88, 139, 197, 523
DraI	TTTAAA	1 cut(s)	657
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	48, 387, 863
EarI	CTCTTC	3 cut(s)	48, 387, 863
Eco130I	CCWWGG	1 cut(s)	884
Eco47I	GGWCC	2 cut(s)	600, 820
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	820
EcoRII	CCWGG	2 cut(s)	889, 982
EcoT14I	CCWWGG	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	4 cut(s)	458, 615, 771, 997
FalI	AAGNNNNNCTT	4 cut(s)	473, 505, 868, 900
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	4 cut(s)	454, 611, 767, 993
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	2 cut(s)	17, 440
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	267, 889
Hin1II	CATG	4 cut(s)	458, 615, 771, 997
HindIII	AAGCTT	1 cut(s)	921
HinfI	GANTC	4 cut(s)	20, 132, 400, 916
HphI	GGTGA	4 cut(s)	43, 697, 905, 914
Hpy166II	GTNNAC	2 cut(s)	216, 705
Hpy188I	TCNGA	5 cut(s)	9, 48, 178, 202, 246
Hpy188III	TCNNGA	4 cut(s)	337, 404, 424, 876
Hpy8I	GTNNAC	2 cut(s)	216, 705
HpyAV	CCTTC	3 cut(s)	268, 750, 893
HpyCH4III	ACNGT	2 cut(s)	121, 382
HpyCH4V	TGCA	7 cut(s)	298, 374, 615, 725, 735, 932, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 929
HpyF3I	CTNAG	6 cut(s)	59, 177, 245, 262, 518, 527
Hsp92II	CATG	4 cut(s)	458, 615, 771, 997
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	5 cut(s)	48, 88, 139, 197, 523
LmnI	GCTCC	1 cut(s)	806
MaeI	CTAG	2 cut(s)	17, 440
MaeIII	GTNAC	4 cut(s)	12, 382, 587, 902
MalI	GATC	5 cut(s)	50, 90, 141, 199, 525
MboI	GATC	5 cut(s)	48, 88, 139, 197, 523
MboII	GAAGA	6 cut(s)	35, 75, 404, 842, 880, 952
MflI	RGATCY	2 cut(s)	139, 523
MluCI	AATT	4 cut(s)	327, 369, 666, 777
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	51, 64, 172, 388, 691, 746, 903
MseI	TTAA	8 cut(s)	68, 185, 318, 656, 774, 837, 855, 948
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	854
MspR9I	CCNGG	2 cut(s)	891, 984
MvaI	CCWGG	2 cut(s)	891, 984
MwoI	GCNNNNNNNGC	2 cut(s)	486, 929
NdeII	GATC	5 cut(s)	48, 88, 139, 197, 523
NlaIII	CATG	4 cut(s)	458, 615, 771, 997
NlaIV	GGNNCC	2 cut(s)	762, 808
NmuCI	GTSAC	2 cut(s)	587, 902
PaqCI	CACCTGC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	20, 400, 916
PfoI	TCCNGGA	1 cut(s)	982
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PpuMI	RGGWCCY	1 cut(s)	820
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	2 cut(s)	889, 982
PspGI	CCWGG	2 cut(s)	889, 982
PspN4I	GGNNCC	2 cut(s)	762, 808
PspPI	GGNCC	2 cut(s)	600, 820
PspPPI	RGGWCCY	1 cut(s)	820
PsuI	RGATCY	2 cut(s)	139, 523
PvuII	CAGCTG	1 cut(s)	107
SaqAI	TTAA	8 cut(s)	68, 185, 318, 656, 774, 837, 855, 948
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	5 cut(s)	48, 88, 139, 197, 523
Sau96I	GGNCC	2 cut(s)	600, 820
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	891, 984
SinI	GGWCC	2 cut(s)	600, 820
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	4 cut(s)	327, 369, 666, 777
SsiI	CCGC	2 cut(s)	254, 675
SspI	AATATT	2 cut(s)	514, 577
SspMI	CTAG	2 cut(s)	17, 440
StyD4I	CCNGG	2 cut(s)	889, 982
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	2 cut(s)	121, 382
TasI	AATT	4 cut(s)	327, 369, 666, 777
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	20, 400, 916
Tru1I	TTAA	8 cut(s)	68, 185, 318, 656, 774, 837, 855, 948
Tru9I	TTAA	8 cut(s)	68, 185, 318, 656, 774, 837, 855, 948
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	2 cut(s)	587, 902
Tsp45I	GTSAC	2 cut(s)	587, 902
TspDTI	ATGAA	5 cut(s)	600, 629, 881, 912, 991
TspRI	CASTG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	2 cut(s)	600, 820
XapI	RAATTY	1 cut(s)	777
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	2 cut(s)	17, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.