Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Forward (+)

54869740 .. 54872325

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCAATAGAAGTAAAGTCGGCAAATATTATTATCAGTGACAGCAGTACGTCCGTCTTTTCATTCAAGTCTTTTGCTACTCAATCCATTCATCAAGGATTTGCCTTAAAAAAGAAAATTTTCTGCGGTAGATATGCTATTTCAGTCGGGGAGTTCACCAATGAGATGGTTGGTGCAAAATCTTGCAACATAAGATTTTTGAGAGGAAGGGTGCCAACATGGATTAAAATTCCCATGTCAGTCGCCATACTATTTGGAGCCTTTGAAAAGGTCCTATCAGAAGATGTTAATAAGGATATAGCATATAAGATTTCTTCATTTTACAAATGTGTGAAGAGCGGAGACCTCTCTAAACTTCAAGCAATACAAGAAACTATTGTACAAATGAATGCTCCTTTTTCTTTGACCCATCAACTTAAGAGCATAATGAAGAGTTCAAGAATACCTTGGCCTGGTGATGAAGGTGATGAGATGTGGAATCAAGCTTGGTGCGCAATAAAGAAGGTTTGGGCTTCAAAGTGGAACGAAAGAGCTTTTATTAGTTGTAAGAAAGCATGGCTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

188

Amino Acids

21.3

Weight (kDa)

9.53

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	339
AciI	CCGC	2 cut(s)	126, 339
AcsI	RAATTY	2 cut(s)	117, 228
AfaI	GTAC	2 cut(s)	49, 381
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	5 cut(s)	67, 266, 359, 438, 516
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	2 cut(s)	485, 533
AluI	AGCT	2 cut(s)	485, 533
Alw26I	GTCTC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	117, 228
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	148, 467, 476
AvaII	GGWCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	211
BccI	CCATC	2 cut(s)	160, 417
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	336
BfrI	CTTAAG	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	213, 259
BmrFI	CCNGG	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	379
BspACI	CCGC	2 cut(s)	126, 339
BspANI	GGCC	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	213, 259
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	329, 425
BstAFI	CTTAAG	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	494
BstMAI	GTCTC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	43
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	48, 380
CviAII	CATG	3 cut(s)	219, 235, 555
CviJI	RGCY	6 cut(s)	260, 451, 485, 512, 533, 559
CviKI_1	RGCY	6 cut(s)	260, 451, 485, 512, 533, 559
CviQI	GTAC	2 cut(s)	48, 380
Eam1104I	CTCTTC	2 cut(s)	329, 425
EarI	CTCTTC	2 cut(s)	329, 425
Eco130I	CCWWGG	1 cut(s)	446
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	222, 238, 558
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FatI	CATG	3 cut(s)	218, 234, 554
FspI	TGCGCA	1 cut(s)	493
GlaI	GCGC	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	3 cut(s)	222, 238, 558
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	3 cut(s)	148, 467, 476
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	3 cut(s)	201, 455, 496
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	176, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	222, 238, 558
HspAI	GCGC	1 cut(s)	492
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	257, 397
LpnPI	CCDG	2 cut(s)	438, 465
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	38
MbiI	CCGCTC	1 cut(s)	339
MboII	GAAGA	4 cut(s)	293, 306, 346, 442
MluCI	AATT	2 cut(s)	117, 228
MnlI	CCTC	2 cut(s)	197, 356
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	4 cut(s)	107, 225, 288, 417
MspCI	CTTAAG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	491
NlaIII	CATG	3 cut(s)	222, 238, 558
NlaIV	GGNNCC	2 cut(s)	213, 259
NmuCI	GTSAC	1 cut(s)	38
NsbI	TGCGCA	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	329
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	478
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	213, 259
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
RsaI	GTAC	2 cut(s)	49, 381
RsaNI	GTAC	2 cut(s)	48, 380
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	107, 225, 288, 417
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	453
SetI	ASST	8 cut(s)	53, 273, 348, 448, 466, 487, 507, 535
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	117, 228
SsiI	CCGC	2 cut(s)	126, 339
SspI	AATATT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	446
TaiI	ACGT	1 cut(s)	53
TasI	AATT	2 cut(s)	117, 228
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	4 cut(s)	107, 225, 288, 417
Tru9I	TTAA	4 cut(s)	107, 225, 288, 417
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	6 cut(s)	51, 80, 306, 401, 443, 474
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	2 cut(s)	117, 228
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.