Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Forward (+)

60581594 .. 60582153

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG428600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCACATGTTGGTCGCGGGGGTCAGGGAGATGTTGGACAGAAGATTTGTAATGAAATACTTGTAATTCAGAGAAACAATGACTGCAAGAATGGCATGATGGAGGAATGGCACCAAAAGTTGCACAATAGTAGTAGCCCAGATGATGTGATAATTTGTGAGGCACTCTTACATTACATTAAGACTGATTTTAGAATCGATGTTTATTGGAAACCATTAACTGCAAATGGTCTCACAAAAGAGAAGCTTGGAGTCACGACTGCCCCATTGTCTCAGAGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

94

Amino Acids

10.52

Weight (kDa)

6.39

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	18
AflIII	ACRYGT	1 cut(s)	7
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	236, 276
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
BanI	GGYRCC	1 cut(s)	111
BccI	CCATC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	236, 276
BfaI	CTAG	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	236, 276
Bso31I	GGTCTC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	18
BstMAI	GTCTC	2 cut(s)	236, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	11
BstUI	CGCG	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	198
CviAII	CATG	2 cut(s)	8, 97
CviJI	RGCY	3 cut(s)	138, 247, 279
CviKI_1	RGCY	3 cut(s)	138, 247, 279
DdeI	CTNAG	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	236
FaeI	CATG	2 cut(s)	11, 100
FaiI	YATR	2 cut(s)	9, 98
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	2 cut(s)	7, 96
FauI	CCCGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	11, 100
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	195, 252
Hpy188I	TCNGA	2 cut(s)	72, 276
Hpy188III	TCNNGA	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	87, 124, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	11, 100
LpnPI	CCDG	2 cut(s)	11, 153
MaeI	CTAG	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	55
MluCI	AATT	2 cut(s)	66, 153
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	2 cut(s)	97, 154
MseI	TTAA	2 cut(s)	180, 218
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	11, 100
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	11
PciI	ACATGT	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	180, 218
SchI	GAGTC	1 cut(s)	261
SetI	ASST	1 cut(s)	249
Sse9I	AATT	2 cut(s)	66, 153
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	283
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	66, 153
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	2 cut(s)	180, 218
Tru9I	TTAA	2 cut(s)	180, 218
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	69
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.