Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Forward (+)

24865902 .. 24873116

Gene Structure 7215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34193.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1866 bp

ATGTTGGTTGCCGGGGTCAGGGGAATTGGACAGAAGATTCGTGATGAAATACTTGTGATTCAGAGGAACAATGACTGTAAGAGTGGCATGATGGAGGAATGGCACCAAAAGTTACACAATAATAGTAGCCCGGATGATGTGATAGTTTGTGAGGCACTCTTACATTACATTAAGTCTGATTTCAGACTTGATGTTTATTGGAAAACATTAATTGCAAATTGTCTCAGCAAAGAGAAGCTTGCAAGTTATGACCGCCCCATTGTCTCAGAGCCTCATTTCAGGGCTGATACTAAGGAGGGTCTCGTCCACGACCTCACGGCATACTTGAAGACATTAAAGGCTGTTCATTCAGATGCTGACCTTGAATCTGCTATCGAAGTTTTGATTCCCTCAAATAGGAATCATGATTTCAGAAGCCATATTTGTGATTTCTCCCCTAAACTGCAGGAGTACCTGAACTTTGTCAAAGCACATCACAGCGACGGAGATATTTTACCACTCATGGAGAAGTTACTAGAATCTCATATTGAGCTTCACCCTCTTCTCAACACCTCCCACAGAAGACTAAAAGATATACTGTTCCTCGATCTTGCTTTGGCTTCAGCTGTCAAAACAACTATGGAAAGGGGACTCAGAGATCTACATTTTTCAAACCCACCGGAGATTATGTTCTTCATTCCTTGGTTCTCGAAAGTTTATGCCTGTCAACAGTTAACAATGAAGATCTCATTTACTGCACCAAGGACTGGTACTGTATTAGTGAACTGTATAAACCCAATCATGAAGAAGAAGATCCAGCCCAGTGCAAAATATCTTGGTAATTTGCTGGGAGTTCAGAAGTTTGCGATTGATACTTTTTCTGAGGAGTTAATGAGGGCTGGATCGGAGACTATTCTGTCTACTCTCATCAAACGTTTTGACCCCATTATTAGAAAGATGGCTAACTTAGGCTGTTGGCAGAGTAAATGGGGAGAGGAGATTCCAGATGGAGTAGTTGCTGTCCTGACACCTGATACACCGGATATTTTATCTCATGTCTCTATAAGAGCAAGAAATAGCAAGGTTGGAGCAAAATCTTGCAACATTAAATTTTTGAGAGGAAGGGTGCCAGCATGGATTAAAATTCCCATGTCAGTTGCCATACCATTTGGAGCCTTTGAAAAGGTCCTATTAGAAGATGTTAATAAGGATATAACATATAAGATTTCTTCATTTTACAAATGTACCCATCAACTTAAGAGCATAATAAAAAGTTCAAGAATACCTTGGCATGGCGTCGAAGGCGACGAGAGGTGGAATCAAGCTTGGCGTGCCATAAAGAAGGTTTGGGCTTCAAAGTGGAATGAAAGAGCTTTTATTAGTTGTAAGAGAGCTAAACTAGATCATGAGAATATATGCATGGCTGTATTGATTCAAGAAGTCATCTGTGCCAATTATGCCTTTGTTATTCACACAAAGAATCTCTTATCAGGGAACACTGCAGAAATTTACACAGAGATAGTTAAGGGCTTGGGAGAGACGTTGGTGGGTGCATATCCTGGACGAGCCATGAGCTTCATAACCCAAAAAGCCAATCTAAACTCTCCAATTTCTATCATATTCAGATCAGACTCAAATGCTGAGGATCTGGAAGGATATGCAGGTGCTGGGCTTTATGACAGTGTAATCATGGATAAAGAGGAGAAAGTTGTATTGGATTACTCAAGCGATCGGATGATCATTGATAGGGGGTTCCAAGTCTCACACTTCTCAAGAATTGCAGAGGCGGGAAAGATATTAGAAGGTCTTGATGGTTGTCCTCAGGACATTGAAGGTGTGGTAAAAGATGGACTTGTATATGTAGCTCAGTCAAGGGCACAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

622

Amino Acids

70.13

Weight (kDa)

8.26

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWD1_pHisD	PF22973	320 - 361	8.1e-14	Alpha-glucan water dikinase, phosphohistidine-like domain
PPDK_N	PF01326	434 - 619	4.9e-15	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1631
AasI	GACNNNNNNGTC	1 cut(s)	895
Acc36I	ACCTGC	1 cut(s)	1631
AccB1I	GGYRCC	2 cut(s)	102, 1105
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	899
AciI	CCGC	2 cut(s)	253, 1766
AclI	AACGTT	1 cut(s)	913
AclWI	GGATC	3 cut(s)	787, 889, 1632
AcsI	RAATTY	3 cut(s)	1088, 1122, 1485
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	1 cut(s)	1275
AfaI	GTAC	3 cut(s)	452, 751, 1225
AfiI	CCNNNNNNNGG	4 cut(s)	18, 396, 746, 1271
AflII	CTTAAG	1 cut(s)	1235
AgsI	TTSAA	8 cut(s)	328, 365, 651, 1160, 1257, 1335, 1415, 1811
AjnI	CCWGG	1 cut(s)	1537
AjuI	GAANNNNNNNTTGG	2 cut(s)	1676, 1708
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
AluBI	AGCT	8 cut(s)	238, 532, 605, 1304, 1352, 1373, 1554, 1844
AluI	AGCT	8 cut(s)	238, 532, 605, 1304, 1352, 1373, 1554, 1844
Alw26I	GTCTC	7 cut(s)	227, 268, 305, 881, 1042, 1511, 1744
AlwI	GGATC	3 cut(s)	787, 889, 1632
AlwNI	CAGNNNCTG	2 cut(s)	356, 1646
ApoI	RAATTY	3 cut(s)	1088, 1122, 1485
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AseI	ATTAAT	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	1165
AsuC2I	CCSGG	2 cut(s)	13, 131
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	1165
AxyI	CCTNAGG	1 cut(s)	1800
BaeGI	GKGCMC	1 cut(s)	1858
BaeI	ACNNNNGTAYC	2 cut(s)	1207, 1240
BanI	GGYRCC	2 cut(s)	102, 1105
BbsI	GAAGAC	2 cut(s)	335, 568
BbvCI	CCTCAGC	1 cut(s)	1620
BccI	CCATC	6 cut(s)	85, 931, 980, 1236, 1784, 1820
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	1539
BclI	TGATCA	1 cut(s)	1716
BcnI	CCSGG	2 cut(s)	13, 131
BcoDI	GTCTC	7 cut(s)	227, 268, 305, 881, 1042, 1511, 1744
BfaI	CTAG	2 cut(s)	515, 1379
BfmI	CTRYAG	2 cut(s)	443, 1479
BfrI	CTTAAG	1 cut(s)	1235
BfuAI	ACCTGC	1 cut(s)	1631
BglII	AGATCT	2 cut(s)	637, 723
Bme1390I	CCNGG	3 cut(s)	13, 131, 1539
Bme18I	GGWCC	1 cut(s)	1165
BmgT120I	GGNCC	1 cut(s)	1165
BmiI	GGNNCC	4 cut(s)	104, 1107, 1153, 1733
BmrFI	CCNGG	3 cut(s)	13, 131, 1539
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	795
BpiI	GAAGAC	2 cut(s)	335, 568
Bpu10I	CCTNAGC	1 cut(s)	1620
BpuEI	CTTGAG	2 cut(s)	1687, 1735
BpuMI	CCSGG	2 cut(s)	13, 131
BsaHI	GRCGYC	1 cut(s)	1275
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	4 cut(s)	12, 680, 740, 1265
BsaWI	WCCGGW	2 cut(s)	658, 1018
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 396, 746, 1271
Bse1I	ACTGG	2 cut(s)	751, 801
Bse21I	CCTNAGG	1 cut(s)	1800
BseBI	CCWGG	1 cut(s)	1539
BseDI	CCNNGG	4 cut(s)	12, 680, 740, 1265
BseGI	GGATG	2 cut(s)	139, 1719
BseLI	CCNNNNNNNGG	4 cut(s)	18, 396, 746, 1271
BseMII	CTCAG	7 cut(s)	238, 279, 646, 852, 1611, 1814, 1859
BseNI	ACTGG	2 cut(s)	751, 801
BseRI	GAGGAG	3 cut(s)	878, 989, 1694
BseSI	GKGCMC	1 cut(s)	1858
BseYI	CCCAGC	2 cut(s)	826, 1646
BsgI	GTGCAG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	1711
BshNI	GGYRCC	2 cut(s)	102, 1105
BsiEI	CGRYCG	1 cut(s)	1711
BsiSI	CCGG	4 cut(s)	12, 131, 659, 1019
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	4 cut(s)	18, 396, 746, 1271
BsmAI	GTCTC	7 cut(s)	227, 268, 305, 881, 1042, 1511, 1744
BsmBI	CGTCTC	1 cut(s)	1511
BsmFI	GGGAC	1 cut(s)	642
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	1858
BspACI	CCGC	2 cut(s)	253, 1766
BspCNI	CTCAG	7 cut(s)	237, 278, 645, 853, 1612, 1813, 1858
BspHI	TCATGA	3 cut(s)	403, 780, 1384
BspLI	GGNNCC	4 cut(s)	104, 1107, 1153, 1733
BspMAI	CTGCAG	2 cut(s)	447, 1483
BspMI	ACCTGC	1 cut(s)	1631
BspPI	GGATC	3 cut(s)	787, 889, 1632
BspT107I	GGYRCC	2 cut(s)	102, 1105
BspTI	CTTAAG	1 cut(s)	1235
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	751, 801
BssECI	CCNNGG	4 cut(s)	12, 680, 740, 1265
BssNI	GRCGYC	1 cut(s)	1275
BssT1I	CCWWGG	3 cut(s)	680, 740, 1265
Bst2UI	CCWGG	1 cut(s)	1539
Bst4CI	ACNGT	6 cut(s)	77, 579, 711, 754, 767, 1661
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	1275
BstAFI	CTTAAG	1 cut(s)	1235
BstC8I	GCNNGC	3 cut(s)	240, 1110, 1311
BstDEI	CTNAG	9 cut(s)	224, 265, 291, 632, 861, 946, 1620, 1800, 1845
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	139, 1719
BstMAI	GTCTC	7 cut(s)	227, 268, 305, 881, 1042, 1511, 1744
BstMCI	CGRYCG	1 cut(s)	1711
BstMWI	GCNNNNNNNGC	3 cut(s)	1281, 1310, 1436
BstNI	CCWGG	1 cut(s)	1539
BstSCI	CCNGG	3 cut(s)	11, 129, 1537
BstSFI	CTRYAG	2 cut(s)	443, 1479
BstSLI	GKGCMC	1 cut(s)	1858
BstV2I	GAAGAC	2 cut(s)	335, 568
BstX2I	RGATCY	4 cut(s)	637, 723, 792, 1624
BstYI	RGATCY	4 cut(s)	637, 723, 792, 1624
Bsu36I	CCTNAGG	1 cut(s)	1800
BtsCI	GGATG	2 cut(s)	139, 1719
BtsI	GCAGTG	1 cut(s)	1476
BtsIMutI	CAGTG	3 cut(s)	808, 1476, 1666
BveI	ACCTGC	1 cut(s)	1631
Cac8I	GCNNGC	3 cut(s)	240, 1110, 1311
CaiI	CAGNNNCTG	2 cut(s)	356, 1646
CciI	TCATGA	3 cut(s)	403, 780, 1384
Cfr13I	GGNCC	1 cut(s)	1165
CseI	GACGC	1 cut(s)	1264
Csp6I	GTAC	3 cut(s)	451, 750, 1224
CviQI	GTAC	3 cut(s)	451, 750, 1224
DdeI	CTNAG	9 cut(s)	224, 265, 291, 632, 861, 946, 1620, 1800, 1845
DrdI	GACNNNNNNGTC	1 cut(s)	895
DseDI	GACNNNNNNGTC	1 cut(s)	895
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	3 cut(s)	680, 740, 1265
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	1165
Eco57I	CTGAAG	1 cut(s)	585
Eco81I	CCTNAGG	1 cut(s)	1800
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	1165
EcoRII	CCWGG	1 cut(s)	1537
EcoT14I	CCWWGG	3 cut(s)	680, 740, 1265
EcoT22I	ATGCAT	1 cut(s)	1400
ErhI	CCWWGG	3 cut(s)	680, 740, 1265
Esp3I	CGTCTC	1 cut(s)	1511
FalI	AAGNNNNNCTT	8 cut(s)	222, 254, 1249, 1281, 1448, 1480, 1815, 1847
FaqI	GGGAC	1 cut(s)	642
FauI	CCCGC	1 cut(s)	1759
FbaI	TGATCA	1 cut(s)	1716
FblI	GTMKAC	1 cut(s)	899
FokI	GGATG	2 cut(s)	146, 1726
FspBI	CTAG	2 cut(s)	515, 1379
GsaI	CCCAGC	2 cut(s)	830, 1650
HapII	CCGG	4 cut(s)	12, 131, 659, 1019
HgaI	GACGC	1 cut(s)	1264
Hin1I	GRCGYC	1 cut(s)	1275
HincII	GTYRAC	2 cut(s)	707, 714
HindII	GTYRAC	2 cut(s)	707, 714
HindIII	AAGCTT	2 cut(s)	236, 1302
HpaI	GTTAAC	1 cut(s)	714
HpaII	CCGG	4 cut(s)	12, 131, 659, 1019
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	5 cut(s)	307, 707, 714, 763, 900
Hpy8I	GTNNAC	5 cut(s)	307, 707, 714, 763, 900
Hpy99I	CGWCG	3 cut(s)	485, 1280, 1289
HpyAV	CCTTC	6 cut(s)	1095, 1274, 1315, 1625, 1775, 1805
HpyCH4III	ACNGT	6 cut(s)	77, 579, 711, 754, 767, 1661
HpyCH4IV	ACGT	2 cut(s)	913, 1520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1281, 1310, 1436
HpyF3I	CTNAG	9 cut(s)	224, 265, 291, 632, 861, 946, 1620, 1800, 1845
HpySE526I	ACGT	2 cut(s)	913, 1520
Hsp92I	GRCGYC	1 cut(s)	1275
Ksp22I	TGATCA	1 cut(s)	1716
KspAI	GTTAAC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	1067, 1151
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	2 cut(s)	515, 1379
MaeII	ACGT	2 cut(s)	913, 1520
MaeIII	GTNAC	2 cut(s)	111, 510
MflI	RGATCY	4 cut(s)	637, 723, 792, 1624
MhlI	GDGCHC	1 cut(s)	1858
MlyI	GAGTC	2 cut(s)	624, 1604
MmeI	TCCRAC	1 cut(s)	1045
Mph1103I	ATGCAT	1 cut(s)	1400
MslI	CAYNNNNRTG	2 cut(s)	351, 423
MspA1I	CMGCKG	1 cut(s)	605
MspCI	CTTAAG	1 cut(s)	1235
MspI	CCGG	4 cut(s)	12, 131, 659, 1019
MspR9I	CCNGG	3 cut(s)	13, 131, 1539
MvaI	CCWGG	1 cut(s)	1539
MwoI	GCNNNNNNNGC	3 cut(s)	1281, 1310, 1436
NciI	CCSGG	2 cut(s)	13, 131
NlaIV	GGNNCC	4 cut(s)	104, 1107, 1153, 1733
NsiI	ATGCAT	1 cut(s)	1400
PagI	TCATGA	3 cut(s)	403, 780, 1384
PaqCI	CACCTGC	1 cut(s)	1631
PcsI	WCGNNNNNNNCGW	1 cut(s)	1284
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	1537
Ple19I	CGATCG	1 cut(s)	1711
PleI	GAGTC	2 cut(s)	624, 1604
PpsI	GAGTC	2 cut(s)	624, 1604
PpuMI	RGGWCCY	1 cut(s)	1165
PshBI	ATTAAT	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	913
Psp5II	RGGWCCY	1 cut(s)	1165
Psp6I	CCWGG	1 cut(s)	1537
PspFI	CCCAGC	2 cut(s)	826, 1646
PspGI	CCWGG	1 cut(s)	1537
PspN4I	GGNNCC	4 cut(s)	104, 1107, 1153, 1733
PspPI	GGNCC	1 cut(s)	1165
PspPPI	RGGWCCY	1 cut(s)	1165
PstI	CTGCAG	2 cut(s)	447, 1483
PstNI	CAGNNNCTG	2 cut(s)	356, 1646
PsuI	RGATCY	4 cut(s)	637, 723, 792, 1624
PvuI	CGATCG	1 cut(s)	1711
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	3 cut(s)	452, 751, 1225
RsaNI	GTAC	3 cut(s)	451, 750, 1224
RseI	CAYNNNNRTG	2 cut(s)	351, 423
Sau96I	GGNCC	1 cut(s)	1165
SchI	GAGTC	2 cut(s)	624, 1604
ScrFI	CCNGG	3 cut(s)	13, 131, 1539
SduI	GDGCHC	1 cut(s)	1858
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	2 cut(s)	443, 1479
SinI	GGWCC	1 cut(s)	1165
SmiMI	CAYNNNNRTG	2 cut(s)	351, 423
SmlI	CTYRAG	3 cut(s)	1235, 1702, 1750
SmoI	CTYRAG	3 cut(s)	1235, 1702, 1750
SsiI	CCGC	2 cut(s)	253, 1766
SspMI	CTAG	2 cut(s)	515, 1379
StyD4I	CCNGG	3 cut(s)	11, 129, 1537
StyI	CCWWGG	3 cut(s)	680, 740, 1265
TaaI	ACNGT	6 cut(s)	77, 579, 711, 754, 767, 1661
TaiI	ACGT	2 cut(s)	916, 1523
TaqI	TCGA	4 cut(s)	375, 585, 689, 1278
TscAI	CASTG	3 cut(s)	808, 1483, 1666
TspDTI	ATGAA	8 cut(s)	60, 335, 664, 734, 797, 1200, 1359, 1546
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	3 cut(s)	808, 1483, 1666
Van91I	CCANNNNNTGG	1 cut(s)	746
Vha464I	CTTAAG	1 cut(s)	1235
VpaK11BI	GGWCC	1 cut(s)	1165
VspI	ATTAAT	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	394
XapI	RAATTY	3 cut(s)	1088, 1122, 1485
XmiI	GTMKAC	1 cut(s)	899
XspI	CTAG	2 cut(s)	515, 1379
Zsp2I	ATGCAT	1 cut(s)	1400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.