Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Forward (+)

59271393 .. 59280625

Gene Structure 9233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG439600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTTTCAGAAGTTACTTGAATCTCGTATTGAGCTTCGCCCTCTTGTGATCACCTCCCACAGCAGACTAAAAGATATACTGTTCCTTGATCTTGCTTTGGCTTCAGCTGTCAAAACAACATGGAAAGGGGACTCACAGATCTACATTTTTCTAACCCACCGTTGGCAGGTTATCAGCCCAGTTGAAGTGCAGGGTATTATAGCTTCGGTTAATGAGCTAATTAGTATTCAGAATAAAGTCTATAAAAAGCCAACCATTCTAATTGCAACTAGAGTAACTGGGGAAGAGGAGATTCCAGATGGAGTAGTTGCTGTCCTGACACCTGATAAGCCGGATGTTCTATCTCATGTCTCTATAAGAGCAAGAAATAGCAAGGTATGCTTTGCCACCTGCTTTGATACGAATCTTCTCAGGGATCTCAGGTTGAAAGATGCAAACCAATGTATAGCATATAAGATTTCTTCGTTTTACAAATGTGTGAAGAGCGGCGACCTCTCTAAACTTCAAGCAATACAAGAAACTATTGTACAAATGAATGCTCCTCTTTCTTTGACCCATCAACTTAAGAGCATAATGAAGAGTTCAAGAATACCTTGGCCTGGTGATGAAGGTGACGAGAGGTGGAATCAAGCTTGGTGTGCAATAAAGAAGGGACGGACTGCAAGTGGAGATGGTGGCATTTCTGTCCCTAATATTTCAAAGTCGTTTGCATATGTCAGAAAGAGTGATCAAGTCTTTTTCCAAGTGCCTCAAATTATTGGTTGCAATTTAGAGGCTTTCACTGTATCCGTTGTTTGTTCTGCTTCTTTCAACGAGCACATATCTACAACTGGCATTTCCATTTTTGTTACAAATTATACCAAATTCATCAGCTTTGCTGTTCGACCAGCTCATCTCACTGAAATAACTTCAGATGAAGTGGTTTCACTGGTTTGGCAGATAAATTTGTCAAACAATGAGTTCAATTTGGAAGGTGGTGACTTTGTTGACGTTGAAGTTGTAATTGCTTCTGGTTTCACTTTGAAGTATACAGGGGTCAGTCTAGTATGGGATCCCAAACTTATCAACGAAAATAAAATAGAGTGCGAGTCATCACTTGGTCCTGCCTCCTCATTTGATAATGACTTATTTGATGATGACTCATCTGATGAGGACCGATCTTCAGAAACATTGAGGTTTGCGATGCAGGAGCTACGACCCATTCATGGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

404

Amino Acids

45.09

Weight (kDa)

5.74

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWD1_pHisD	PF22973	55 - 146	1.7e-45	Alpha-glucan water dikinase, phosphohistidine-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	398
Acc36I	ACCTGC	3 cut(s)	157, 398, 1200
AccBSI	CCGCTC	1 cut(s)	486
AccI	GTMKAC	1 cut(s)	1028
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	3 cut(s)	423, 1046, 1059
AcsI	RAATTY	2 cut(s)	863, 943
AcuI	CTGAAG	3 cut(s)	87, 894, 1146
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	4 cut(s)	162, 166, 599, 1205
AflII	CTTAAG	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	8 cut(s)	34, 107, 203, 217, 632, 873, 890, 1192
AluI	AGCT	8 cut(s)	34, 107, 203, 217, 632, 873, 890, 1192
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	3 cut(s)	423, 1046, 1059
AoxI	GGCC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	863, 943
AspS9I	GGNCC	2 cut(s)	1100, 1153
AsuHPI	GGTGA	4 cut(s)	43, 614, 623, 989
AvaII	GGWCC	2 cut(s)	1100, 1153
BamHI	GGATCC	1 cut(s)	1051
BarI	GAAGNNNNNNTAC	2 cut(s)	187, 219
Bbv12I	GWGCWC	1 cut(s)	819
BccI	CCATC	3 cut(s)	293, 564, 665
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	1 cut(s)	796
BclI	TGATCA	2 cut(s)	48, 727
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	270, 1043
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	3 cut(s)	157, 398, 1200
BfuI	GTATCC	1 cut(s)	796
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	2 cut(s)	1100, 1153
BmgT120I	GGNCC	2 cut(s)	1100, 1153
BmiI	GGNNCC	1 cut(s)	1053
BmrFI	CCNGG	1 cut(s)	600
BmrI	ACTGGG	2 cut(s)	173, 288
BmsI	GCATC	2 cut(s)	421, 1173
BmuI	ACTGGG	2 cut(s)	173, 288
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 166, 599, 1205
Bse1I	ACTGG	4 cut(s)	179, 283, 835, 933
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	162, 166, 599, 1205
BseMII	CTCAG	2 cut(s)	424, 433
BseNI	ACTGG	4 cut(s)	179, 283, 835, 933
BseRI	GAGGAG	3 cut(s)	302, 531, 1099
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	819
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	3 cut(s)	143, 666, 671
BslI	CCNNNNNNNGG	4 cut(s)	162, 166, 599, 1205
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	3 cut(s)	143, 666, 671
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	2 cut(s)	423, 432
BspLI	GGNNCC	1 cut(s)	1053
BspMI	ACCTGC	3 cut(s)	157, 398, 1200
BspPI	GGATC	3 cut(s)	423, 1046, 1059
BspQI	GCTCTTC	1 cut(s)	476
BspTI	CTTAAG	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	4 cut(s)	179, 283, 835, 933
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
BssNAI	GTATAC	1 cut(s)	1029
BssT1I	CCWWGG	1 cut(s)	593
Bst1107I	GTATAC	1 cut(s)	1029
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	3 cut(s)	81, 161, 784
Bst6I	CTCTTC	3 cut(s)	279, 476, 572
BstAFI	CTTAAG	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	410, 419
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	7 cut(s)	51, 91, 141, 418, 730, 1054, 1160
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 638
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstX2I	RGATCY	3 cut(s)	138, 415, 1051
BstYI	RGATCY	3 cut(s)	138, 415, 1051
BstZ17I	GTATAC	1 cut(s)	1029
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	1196
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	3 cut(s)	780, 897, 926
BveI	ACCTGC	3 cut(s)	157, 398, 1200
Cfr13I	GGNCC	2 cut(s)	1100, 1153
Csp6I	GTAC	1 cut(s)	527
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	3 cut(s)	120, 347, 1205
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	2 cut(s)	410, 419
DpnI	GATC	7 cut(s)	50, 90, 140, 417, 729, 1053, 1159
DpnII	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
Eam1104I	CTCTTC	3 cut(s)	279, 476, 572
EarI	CTCTTC	3 cut(s)	279, 476, 572
Eco130I	CCWWGG	1 cut(s)	593
Eco47I	GGWCC	2 cut(s)	1100, 1153
Eco57I	CTGAAG	3 cut(s)	87, 894, 1146
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	3 cut(s)	123, 350, 1208
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 577, 609
FaqI	GGGAC	3 cut(s)	143, 666, 671
FatI	CATG	3 cut(s)	119, 346, 1204
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	2 cut(s)	48, 727
FblI	GTMKAC	1 cut(s)	1028
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	487
FspBI	CTAG	2 cut(s)	270, 1043
GluI	GCNGC	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	3 cut(s)	123, 350, 1208
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	7 cut(s)	20, 131, 292, 403, 625, 1088, 1139
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	4 cut(s)	43, 614, 623, 989
Hpy166II	GTNNAC	2 cut(s)	988, 1029
Hpy188I	TCNGA	6 cut(s)	9, 231, 719, 913, 1147, 1165
Hpy188III	TCNNGA	3 cut(s)	296, 316, 585
Hpy8I	GTNNAC	2 cut(s)	988, 1029
HpyAV	CCTTC	3 cut(s)	602, 643, 965
HpyCH4III	ACNGT	3 cut(s)	81, 161, 784
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	8 cut(s)	190, 266, 434, 641, 662, 710, 765, 1186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 638
HpyF3I	CTNAG	2 cut(s)	410, 419
HpySE526I	ACGT	1 cut(s)	990
Hsp92II	CATG	3 cut(s)	123, 350, 1208
Ksp22I	TGATCA	2 cut(s)	48, 727
Kzo9I	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	2 cut(s)	544, 1189
LweI	GCATC	2 cut(s)	421, 1173
MaeI	CTAG	2 cut(s)	270, 1043
MaeII	ACGT	1 cut(s)	990
MaeIII	GTNAC	5 cut(s)	12, 274, 611, 847, 977
MalI	GATC	7 cut(s)	50, 90, 140, 417, 729, 1053, 1159
MbiI	CCGCTC	1 cut(s)	486
MboI	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
MboII	GAAGA	6 cut(s)	296, 398, 453, 493, 589, 1152
MflI	RGATCY	3 cut(s)	138, 415, 1051
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	9 cut(s)	219, 261, 753, 766, 853, 863, 943, 964, 1002
MlyI	GAGTC	3 cut(s)	125, 1097, 1133
MseI	TTAA	2 cut(s)	210, 564
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	378, 638
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
NlaIII	CATG	3 cut(s)	123, 350, 1208
NlaIV	GGNNCC	1 cut(s)	1053
NmuCI	GTSAC	2 cut(s)	611, 977
PaqCI	CACCTGC	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	476
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	4 cut(s)	20, 292, 403, 625
PkrI	GCNGC	1 cut(s)	488
PleI	GAGTC	3 cut(s)	125, 1096, 1133
PpsI	GAGTC	3 cut(s)	125, 1096, 1133
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	1053
PspPI	GGNCC	2 cut(s)	1100, 1153
PsuI	RGATCY	3 cut(s)	138, 415, 1051
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	210, 564
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	7 cut(s)	48, 88, 138, 415, 727, 1051, 1157
Sau96I	GGNCC	2 cut(s)	1100, 1153
SchI	GAGTC	3 cut(s)	125, 1097, 1133
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	2 cut(s)	421, 1173
SinI	GGWCC	2 cut(s)	1100, 1153
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	9 cut(s)	219, 261, 753, 766, 853, 863, 943, 964, 1002
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	2 cut(s)	270, 1043
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	3 cut(s)	81, 161, 784
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	1 cut(s)	883
TaqII	GACCGA	1 cut(s)	1170
TasI	AATT	9 cut(s)	219, 261, 753, 766, 853, 863, 943, 964, 1002
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	4 cut(s)	20, 292, 403, 625
Tru1I	TTAA	2 cut(s)	210, 564
Tru9I	TTAA	2 cut(s)	210, 564
TscAI	CASTG	3 cut(s)	787, 904, 933
TseFI	GTSAC	2 cut(s)	611, 977
Tsp45I	GTSAC	2 cut(s)	611, 977
TspDTI	ATGAA	6 cut(s)	548, 590, 621, 856, 930, 1193
TspGWI	ACGGA	2 cut(s)	670, 778
TspRI	CASTG	3 cut(s)	787, 904, 933
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	1100, 1153
XapI	RAATTY	2 cut(s)	863, 943
XmiI	GTMKAC	1 cut(s)	1028
XspI	CTAG	2 cut(s)	270, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.