Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Forward (+)

60485308 .. 60535897

Gene Structure 50590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG458900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTTTCAGAAGTTACTAGAATCTCGTATTGAGCTTCGCCCTCTTCTGATCACCTCCCTTAGAAGATTAAAAGATATGCTGGTCCTTGATCTTGCTTTGGCTTCAGCTGTCAAAACAACTGTGGAAAGGGGACTCACAGATCTACTTTTTTCTAACCCACAGCAGATTATGTTCTTCATTTCCTTGGTGCTCGAAAATTTATGCCTGTCAACAGTTAACAATGAAGATCTCATTTACTGCACCAAGGTAGATCTCTCCGTGAGGATGAATGCAATCATGCTGACCTCTTCTCGTGTATCATTTGGGGAACTTCCAGTTTATGGTTTTGGACTGGTGTCAGTGCTACAGAAGAAGATCCAGTCCAGTGCAAAATGTCTTGGTAATTTGCTTGGTGTTCAGAAGTCAGCGATTGATACTTTTTCTGAGGAGTTAATAAGGGCTGGATCAGAGACTATTCTGTCTACTCTCATCAATCGTTTTGACCCCATTCTGAGAAAAGCGGCTAACTTAGGCCGTTGGCAGGTTATCAGCCCAGTTGAAGTGCAGGGTTTTATAACTTTGGTTAATGTGCTAATTAGTATCCAGAACAAAGTCTATAAAAAGCCAACCATTCTAATTGCAACTACGGTAACTGGGGAAGAGGAGATTCCAGATGGGGTAGTTGCTGTCCTGACACCTGATACGCCAGATGTTCTATCTCATGTCTCTATAAGAGCAATAAATAGCAAGGTATGCTTTGCCACCTGCTTTGATTCAAATATTCTCAGCGATCTCAGGTTGAAAGAAGGCAAACCAATGTCAATAGAAGTAAAGTTGGCAAATATTATTATCAGTGACAGCAGTAGGTCCGTCTTTTCATGTAAGTCTTGTGCTACTCAATCCATTCATCAGGGATTTACTTTAAAAAAGAAACTTGTCTGCGGTAGATGTGCTATTTCAGTTGAGGAGTTCACCAATGAGATGGTTGGTGCAAAATCTTGCAACATAAGATTTTTGAGAGCAAGGGTGCCAGCATGGATTAAAATTCATATATCAGTTGCCATACCATTTGGAGCCTTTGAAAAGGTCCTATTAGAAGATGTTAATAAGCTTTTGAAGGGGAATCCCAATTGTATCTGTGCCCGACCCCCTAGCGGCACTGATGCTACACAGACATGCGTCTGTGTGGCATCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

392

Amino Acids

43.03

Weight (kDa)

8.88

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWD1_pHisD	PF22973	173 - 283	3.8e-48	Alpha-glucan water dikinase, phosphohistidine-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AarI	CACCTGC	1 cut(s)	752
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	2 cut(s)	511, 752
AccB1I	GGYRCC	1 cut(s)	1006
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	461
AciI	CCGC	3 cut(s)	500, 921, 1134
AclWI	GGATC	2 cut(s)	349, 451
AcsI	RAATTY	2 cut(s)	196, 1023
AcuI	CTGAAG	1 cut(s)	87
AfiI	CCNNNNNNNGG	3 cut(s)	320, 520, 1133
AgsI	TTSAA	5 cut(s)	539, 756, 781, 1061, 1096
AluBI	AGCT	3 cut(s)	34, 107, 1090
AluI	AGCT	3 cut(s)	34, 107, 1090
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	443, 709
AlwI	GGATC	2 cut(s)	349, 451
AoxI	GGCC	1 cut(s)	511
ApoI	RAATTY	2 cut(s)	196, 1023
AspS9I	GGNCC	3 cut(s)	82, 846, 1066
AsuHPI	GGTGA	2 cut(s)	43, 943
AvaII	GGWCC	3 cut(s)	82, 846, 1066
BaeGI	GKGCMC	1 cut(s)	1123
BanI	GGYRCC	1 cut(s)	1006
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	2 cut(s)	647, 955
BceAI	ACGGC	1 cut(s)	498
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	443, 709
BfaI	CTAG	2 cut(s)	17, 1131
BfmI	CTRYAG	1 cut(s)	344
BfuAI	ACCTGC	2 cut(s)	511, 752
BfuI	GTATCC	1 cut(s)	590
BglII	AGATCT	3 cut(s)	139, 226, 250
BisI	GCNGC	2 cut(s)	501, 1135
BlsI	GCNGC	2 cut(s)	502, 1136
Bme18I	GGWCC	3 cut(s)	82, 846, 1066
BmgT120I	GGNCC	3 cut(s)	82, 846, 1066
BmiI	GGNNCC	2 cut(s)	1008, 1054
BmrI	ACTGGG	2 cut(s)	527, 642
BmsI	GCATC	1 cut(s)	1132
BmuI	ACTGGG	2 cut(s)	527, 642
BoxI	GACNNNNGTC	2 cut(s)	334, 1157
BsaJI	CCNNGG	2 cut(s)	183, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 520, 1133
Bse1I	ACTGG	6 cut(s)	314, 336, 358, 363, 533, 637
BseDI	CCNNGG	2 cut(s)	183, 243
BseGI	GGATG	2 cut(s)	270, 1169
BseLI	CCNNNNNNNGG	3 cut(s)	320, 520, 1133
BseMII	CTCAG	4 cut(s)	414, 482, 778, 787
BseNI	ACTGG	6 cut(s)	314, 336, 358, 363, 533, 637
BseRI	GAGGAG	3 cut(s)	440, 656, 959
BseSI	GKGCMC	1 cut(s)	1123
BsgI	GTGCAG	2 cut(s)	223, 563
BshFI	GGCC	1 cut(s)	513
BshNI	GGYRCC	1 cut(s)	1006
BsiHKAI	GWGCWC	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	320, 520, 1133
BsmAI	GTCTC	2 cut(s)	443, 709
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	192, 1123
Bsp143I	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
BspACI	CCGC	3 cut(s)	500, 921, 1134
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	4 cut(s)	415, 483, 777, 786
BspLI	GGNNCC	2 cut(s)	1008, 1054
BspMI	ACCTGC	2 cut(s)	511, 752
BspPI	GGATC	2 cut(s)	349, 451
BspT107I	GGYRCC	1 cut(s)	1006
BsrI	ACTGG	6 cut(s)	314, 336, 358, 363, 533, 637
BssECI	CCNNGG	2 cut(s)	183, 243
BssMI	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	183, 243
Bst2BI	CACGAG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	121, 214, 628
Bst6I	CTCTTC	3 cut(s)	48, 292, 633
BstAPI	GCANNNNNTGC	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	1011
BstDEI	CTNAG	6 cut(s)	59, 423, 491, 508, 764, 773
BstF5I	GGATG	2 cut(s)	270, 1169
BstKTI	GATC	8 cut(s)	51, 91, 142, 229, 253, 357, 446, 772
BstMAI	GTCTC	2 cut(s)	443, 709
BstMBI	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	732
BstNSI	RCATGY	1 cut(s)	1158
BstPAI	GACNNNNGTC	2 cut(s)	334, 1157
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	1123
BstX2I	RGATCY	4 cut(s)	139, 226, 250, 354
BstXI	CCANNNNNNTGG	1 cut(s)	961
BstYI	RGATCY	4 cut(s)	139, 226, 250, 354
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	270, 1169
BtsIMutI	CAGTG	4 cut(s)	345, 370, 838, 1137
BveI	ACCTGC	2 cut(s)	511, 752
Cac8I	GCNNGC	1 cut(s)	1011
Cfr13I	GGNCC	3 cut(s)	82, 846, 1066
CseI	GACGC	1 cut(s)	1147
CspCI	CAANNNNNGTGG	2 cut(s)	730, 765
CviAII	CATG	5 cut(s)	277, 701, 858, 1014, 1155
DdeI	CTNAG	6 cut(s)	59, 423, 491, 508, 764, 773
DpnI	GATC	8 cut(s)	50, 90, 141, 228, 252, 356, 445, 771
DpnII	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
DraI	TTTAAA	1 cut(s)	903
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
Eam1104I	CTCTTC	3 cut(s)	48, 292, 633
EarI	CTCTTC	3 cut(s)	48, 292, 633
Eco130I	CCWWGG	2 cut(s)	183, 243
Eco47I	GGWCC	3 cut(s)	82, 846, 1066
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoT14I	CCWWGG	2 cut(s)	183, 243
ErhI	CCWWGG	2 cut(s)	183, 243
FaeI	CATG	5 cut(s)	280, 704, 861, 1017, 1158
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	5 cut(s)	276, 700, 857, 1013, 1154
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	461
Fnu4HI	GCNGC	2 cut(s)	501, 1135
FokI	GGATG	2 cut(s)	277, 1156
Fsp4HI	GCNGC	2 cut(s)	501, 1135
FspBI	CTAG	2 cut(s)	17, 1131
GluI	GCNGC	2 cut(s)	501, 1135
HaeIII	GGCC	1 cut(s)	513
HgaI	GACGC	1 cut(s)	1147
Hin1II	CATG	5 cut(s)	280, 704, 861, 1017, 1158
HincII	GTYRAC	2 cut(s)	210, 217
HindII	GTYRAC	2 cut(s)	210, 217
HindIII	AAGCTT	1 cut(s)	1088
HinfI	GANTC	5 cut(s)	20, 132, 646, 752, 1102
HpaI	GTTAAC	1 cut(s)	217
HphI	GGTGA	2 cut(s)	43, 943
Hpy166II	GTNNAC	4 cut(s)	210, 217, 462, 951
Hpy188I	TCNGA	6 cut(s)	9, 48, 399, 424, 448, 492
Hpy188III	TCNNGA	3 cut(s)	583, 650, 670
Hpy8I	GTNNAC	4 cut(s)	210, 217, 462, 951
HpyAV	CCTTC	2 cut(s)	779, 1090
HpyCH4III	ACNGT	3 cut(s)	121, 214, 628
HpyCH4V	TGCA	7 cut(s)	240, 272, 368, 544, 620, 971, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	732
HpyF3I	CTNAG	6 cut(s)	59, 423, 491, 508, 764, 773
Hsp92II	CATG	5 cut(s)	280, 704, 861, 1017, 1158
Ksp22I	TGATCA	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
LmnI	GCTCC	1 cut(s)	1052
LweI	GCATC	1 cut(s)	1132
MaeI	CTAG	2 cut(s)	17, 1131
MaeIII	GTNAC	3 cut(s)	12, 628, 833
MalI	GATC	8 cut(s)	50, 90, 141, 228, 252, 356, 445, 771
MboI	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
MboII	GAAGA	9 cut(s)	35, 75, 166, 236, 279, 361, 364, 650, 1088
MfeI	CAATTG	1 cut(s)	1108
MflI	RGATCY	4 cut(s)	139, 226, 250, 354
MhlI	GDGCHC	2 cut(s)	192, 1123
MluCI	AATT	6 cut(s)	196, 382, 573, 615, 1023, 1108
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	51, 64, 255, 295, 418, 634, 937
MseI	TTAA	7 cut(s)	68, 216, 431, 564, 902, 1020, 1083
MslI	CAYNNNNRTG	1 cut(s)	1153
MspA1I	CMGCKG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	1108
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	732
NdeII	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
NlaIII	CATG	5 cut(s)	280, 704, 861, 1017, 1158
NlaIV	GGNNCC	2 cut(s)	1008, 1054
NmuCI	GTSAC	1 cut(s)	833
NspI	RCATGY	1 cut(s)	1158
PaqCI	CACCTGC	1 cut(s)	752
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	20, 646, 752, 1102
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	502, 1136
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PpuMI	RGGWCCY	1 cut(s)	1066
PshAI	GACNNNNGTC	2 cut(s)	334, 1157
PsiI	TTATAA	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	1066
PspN4I	GGNNCC	2 cut(s)	1008, 1054
PspPI	GGNCC	3 cut(s)	82, 846, 1066
PspPPI	RGGWCCY	1 cut(s)	1066
PsuI	RGATCY	4 cut(s)	139, 226, 250, 354
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	1153
SaqAI	TTAA	7 cut(s)	68, 216, 431, 564, 902, 1020, 1083
SatI	GCNGC	2 cut(s)	501, 1135
Sau3AI	GATC	8 cut(s)	48, 88, 139, 226, 250, 354, 443, 769
Sau96I	GGNCC	3 cut(s)	82, 846, 1066
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	192, 1123
SfaNI	GCATC	1 cut(s)	1132
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	3 cut(s)	82, 846, 1066
SmiMI	CAYNNNNRTG	1 cut(s)	1153
Sse9I	AATT	6 cut(s)	196, 382, 573, 615, 1023, 1108
SsiI	CCGC	3 cut(s)	500, 921, 1134
SspI	AATATT	2 cut(s)	760, 823
SspMI	CTAG	2 cut(s)	17, 1131
StyI	CCWWGG	2 cut(s)	183, 243
TaaI	ACNGT	3 cut(s)	121, 214, 628
TaqI	TCGA	1 cut(s)	192
TasI	AATT	6 cut(s)	196, 382, 573, 615, 1023, 1108
TauI	GCSGC	2 cut(s)	503, 1137
TfiI	GAWTC	4 cut(s)	20, 646, 752, 1102
Tru1I	TTAA	7 cut(s)	68, 216, 431, 564, 902, 1020, 1083
Tru9I	TTAA	7 cut(s)	68, 216, 431, 564, 902, 1020, 1083
TscAI	CASTG	4 cut(s)	345, 370, 838, 1144
TseFI	GTSAC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	6 cut(s)	166, 237, 281, 846, 875, 1016
TspGWI	ACGGA	2 cut(s)	247, 838
TspRI	CASTG	4 cut(s)	345, 370, 838, 1144
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	3 cut(s)	82, 846, 1066
XapI	RAATTY	2 cut(s)	196, 1023
XceI	RCATGY	1 cut(s)	1158
XmiI	GTMKAC	1 cut(s)	461
XspI	CTAG	2 cut(s)	17, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.