Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004913

Physical Location & Seq

Genomic Coordinates Forward (+)

58830140 .. 58835244

Gene Structure 5105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGAATCAAACTACATATAGTATCTACTATTGCAGATTGCCATACTATTCAAGTTCCCCTTTGTGTAAATCAAAGGATCATGATTTCGCAAGCACTGTTTGTGTTTTGTCCCCGAAACTGCAGGAGTACCTGAACTTTGTCAAAGCACATCGTGGTGATGAAGATATTGTTCCACTAATGGAGAAGTTACTTGAATCTCGTATTGAGCTTCGCCCTCTTCTGATCACCTCCCACAGAAGACTAAAAGATATACTGTTCCTTGATCTTGCTTTGGCTTCAGCTGTCAAAACAACTATGGAAAGGGGACTCACAGATCTACATTTTTCTAACCCACCGGACTGGTACCGTATTAGTGAACTGTATAAACCCAATCATGGTCAGTGGGCATTACAATCAAAGGCTATTCTTGATCGCTTACAATTAGTACTTGCTGATAGGTCTCAGTGCTACCAGAGGAAGATCCAGCCCAGTGCAAAATATCTTGGTAATTTGCTTGGTGTTCAGAGGTCAGTGGTTATCAGCCCAGTTGAAGTGCAGGGTATTATAGCTTCGGTTAATGAGCTAATTAGTATTCAGAACAAAGTCTATAAAAAGCCAACCATTCTAATTGCAACTAGAGTAACTGAGGAAGAGGAGATTCCAGATGGAGTAGTTGCTGTCCTGACACCTGATAAGCCAGATGTTCTATCTCATGACTCTATAAGAGCAAGAAATAGCAAGGTATGCTTTGCCACCTGCTTTGATACGAATCTTCTCAGGGATCTCAGGTTGAAAGAAGGCAAACCAATGTCAATAGAAGTAAAGTCGGCAAATATTATTATCAGTGACAGCAGTACGTCCGTCTTTTCATTCAAGTCTTTTGCTACTCAATCCATTCATCAAGGATTTGCCTTAAAAAATAAAATTTTCTGCGGTAGATATGCTATTTCAGTCGGGGAGTTCACCAATGAGATGGTTGGTGCAAAATCTTGCAACCTAAGATTTTTGAGAGGAAGGGTGCCAACATGGATTAAAATTCCCATGTCAGTCGCCATACTATTTGGAGCCTTTGAAAAGGTCCTATCAGAAGATGTTAATAAGGATATAGCATATAAGATTTCTTCATTTTACAAATGTGTGAAGAGCGGAGACCTCTCTAAACTTCAAGCAATACAAGAAACTATTGTACAAATGAATGCTCCTTTTTCTTTGACCCATCAACTTAAGAGCATAATGAAGAGTTCAAGAATACCTTGGCCTGGTGATGAAGGTGATGAGATGTGGAATCAAGCTTGGTGCGCAATAAAGAAGGTTTGGGCTTCAAAGTGGAACGAAAGAGCTTTTATTAGTTGTAAGAAAGCTAAACTAGATCATGAGAATATATGCATGGCTGTATTGATTCACGAAATCATCTGTGCCGATTATGCCTTTGTTATTCACACAAAGAATCCCTTGTCGGGGAATACTGCACAAATTCACACAGAGATAGTTAAGGGCTTGGGGGAGACTTTGGTGGGTGCATATCCTGGACGAGCCATGAGCTTCATAACCCAAAAAGCCAATCTAAACTCTCCTATTGTTAATTGTTATCCAAGCAAGCCAATAGGGCCGTATAGCAAGCAGTCCATCATATTCAGATCAGACTCAAATGCTGAGGATCTGGAAGGATATGCAGGTACTGGGCTTTATGACAGGTTTGTCCTAAACTTGAATTTAACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

567

Amino Acids

63.8

Weight (kDa)

8.96

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWD1_pHisD	PF22973	172 - 280	1.4e-46	Alpha-glucan water dikinase, phosphohistidine-like domain
PPDK_N	PF01326	425 - 499	4e-11	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24450 AT4G24450 AT4G24450
fragaria_vesca	FvH4_5g34192 FvH4_5g34193
malus_domestica	MD08G1203800.v1.1
prunus_persica	Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1 Prupe.1G536100_v2.0.a1
pyrus_communis	pycom08g17580
rosa_chinensis	RchiOBHm_Chr7g0233791 RchiOBHm_Chr7g0234231
rosa_roxburghii	Rroxscaffold_3G00226950 Rroxscaffold_3G00226990
rosa_rugosa	Rorug07G0283000
rosa_samantha	Rh7AG410700 Rh7AG439300 Rh7AG439600 Rh7BG411700 Rh7CG458900 Rh7CG460200 Rh7DG428600 Rh7DG428800
rosa_wichuraiana	Rw7G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	743
AasI	GACNNNNNNGTC	1 cut(s)	1676
Acc16I	TGCGCA	1 cut(s)	1279
Acc36I	ACCTGC	2 cut(s)	743, 1643
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	342, 997
AccBSI	CCGCTC	1 cut(s)	1125
AciI	CCGC	2 cut(s)	912, 1125
AclWI	GGATC	4 cut(s)	84, 454, 768, 1644
AcsI	RAATTY	4 cut(s)	903, 1014, 1452, 1690
AcuI	CTGAAG	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	6 cut(s)	128, 344, 426, 835, 1167, 1657
AfiI	CCNNNNNNNGG	4 cut(s)	374, 1238, 1436, 1437
AflII	CTTAAG	1 cut(s)	1202
AjnI	CCWGG	2 cut(s)	1237, 1504
AluBI	AGCT	8 cut(s)	208, 281, 548, 562, 1271, 1319, 1340, 1521
AluI	AGCT	8 cut(s)	208, 281, 548, 562, 1271, 1319, 1340, 1521
Alw26I	GTCTC	3 cut(s)	444, 1122, 1478
AlwI	GGATC	4 cut(s)	84, 454, 768, 1644
AlwNI	CAGNNNCTG	1 cut(s)	1658
AoxI	GGCC	2 cut(s)	1235, 1586
ApoI	RAATTY	4 cut(s)	903, 1014, 1452, 1690
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	1280
AspS9I	GGNCC	2 cut(s)	1057, 1586
AsuHPI	GGTGA	5 cut(s)	167, 217, 934, 1253, 1262
AvaII	GGWCC	1 cut(s)	1057
BanI	GGYRCC	2 cut(s)	342, 997
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
BbsI	GAAGAC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	1632
BccI	CCATC	4 cut(s)	638, 946, 1203, 1613
BceAI	ACGGC	1 cut(s)	1573
BciT130I	CCWGG	2 cut(s)	1239, 1506
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	444, 1122, 1478
BfaI	CTAG	2 cut(s)	615, 1346
BfmI	CTRYAG	1 cut(s)	119
BfrI	CTTAAG	1 cut(s)	1202
BfuAI	ACCTGC	2 cut(s)	743, 1643
BglI	GCCNNNNNGGC	1 cut(s)	1585
BglII	AGATCT	1 cut(s)	313
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	1239, 1506
Bme18I	GGWCC	1 cut(s)	1057
BmgT120I	GGNCC	2 cut(s)	1057, 1586
BmiI	GGNNCC	3 cut(s)	344, 999, 1045
BmrFI	CCNGG	2 cut(s)	1239, 1506
BmrI	ACTGGG	3 cut(s)	462, 518, 1668
BmuI	ACTGGG	3 cut(s)	462, 518, 1668
BpiI	GAAGAC	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	1632
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	2 cut(s)	444, 1122
BsaJI	CCNNGG	1 cut(s)	1232
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	4 cut(s)	374, 1238, 1436, 1437
Bse1I	ACTGG	4 cut(s)	344, 468, 524, 1663
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	2 cut(s)	1239, 1506
BseDI	CCNNGG	1 cut(s)	1232
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	4 cut(s)	374, 1238, 1436, 1437
BseMII	CTCAG	5 cut(s)	455, 615, 769, 778, 1623
BseNI	ACTGG	4 cut(s)	344, 468, 524, 1663
BseRI	GAGGAG	1 cut(s)	647
BsgI	GTGCAG	2 cut(s)	554, 1431
BshFI	GGCC	2 cut(s)	1237, 1588
BshNI	GGYRCC	2 cut(s)	342, 997
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	94, 318
BslI	CCNNNNNNNGG	4 cut(s)	374, 1238, 1436, 1437
BsmAI	GTCTC	3 cut(s)	444, 1122, 1478
BsmFI	GGGAC	2 cut(s)	94, 318
BsmI	GAATGC	1 cut(s)	1180
BsnI	GGCC	2 cut(s)	1237, 1588
Bso31I	GGTCTC	2 cut(s)	444, 1122
Bsp1407I	TGTACA	1 cut(s)	1165
BspACI	CCGC	2 cut(s)	912, 1125
BspANI	GGCC	2 cut(s)	1237, 1588
BspCNI	CTCAG	5 cut(s)	454, 616, 768, 777, 1624
BspHI	TCATGA	3 cut(s)	79, 691, 1351
BspLI	GGNNCC	3 cut(s)	344, 999, 1045
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	743, 1643
BspPI	GGATC	4 cut(s)	84, 454, 768, 1644
BspQI	GCTCTTC	1 cut(s)	1115
BspT107I	GGYRCC	2 cut(s)	342, 997
BspTI	CTTAAG	1 cut(s)	1202
BspTNI	GGTCTC	2 cut(s)	444, 1122
BsrBI	CCGCTC	1 cut(s)	1125
BsrGI	TGTACA	1 cut(s)	1165
BsrI	ACTGG	4 cut(s)	344, 468, 524, 1663
BssECI	CCNNGG	1 cut(s)	1232
BssT1I	CCWWGG	1 cut(s)	1232
Bst2UI	CCWGG	2 cut(s)	1239, 1506
Bst4CI	ACNGT	4 cut(s)	97, 255, 347, 360
Bst6I	CTCTTC	4 cut(s)	222, 624, 1115, 1211
BstAFI	CTTAAG	1 cut(s)	1202
BstAPI	GCANNNNNTGC	1 cut(s)	723
BstAUI	TGTACA	1 cut(s)	1165
BstC8I	GCNNGC	3 cut(s)	91, 1577, 1598
BstDEI	CTNAG	6 cut(s)	441, 624, 755, 764, 977, 1632
BstHHI	GCGC	1 cut(s)	1280
BstMAI	GTCTC	3 cut(s)	444, 1122, 1478
BstMWI	GCNNNNNNNGC	4 cut(s)	723, 1277, 1403, 1585
BstNI	CCWGG	2 cut(s)	1239, 1506
BstSCI	CCNGG	2 cut(s)	1237, 1504
BstSFI	CTRYAG	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	4 cut(s)	313, 459, 760, 1636
BstXI	CCANNNNNNTGG	2 cut(s)	339, 952
BstYI	RGATCY	4 cut(s)	313, 459, 760, 1636
BsuRI	GGCC	2 cut(s)	1237, 1588
BtsIMutI	CAGTG	6 cut(s)	93, 386, 449, 475, 516, 829
BveI	ACCTGC	2 cut(s)	743, 1643
Cac8I	GCNNGC	3 cut(s)	91, 1577, 1598
CaiI	CAGNNNCTG	1 cut(s)	1658
CciI	TCATGA	3 cut(s)	79, 691, 1351
CfoI	GCGC	1 cut(s)	1280
Cfr13I	GGNCC	2 cut(s)	1057, 1586
Csp6I	GTAC	6 cut(s)	127, 343, 425, 834, 1166, 1656
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	8 cut(s)	80, 374, 692, 1005, 1021, 1352, 1366, 1516
CviQI	GTAC	6 cut(s)	127, 343, 425, 834, 1166, 1656
DdeI	CTNAG	6 cut(s)	441, 624, 755, 764, 977, 1632
DraIII	CACNNNGTG	1 cut(s)	152
DrdI	GACNNNNNNGTC	1 cut(s)	1676
DseDI	GACNNNNNNGTC	1 cut(s)	1676
Eam1104I	CTCTTC	4 cut(s)	222, 624, 1115, 1211
EarI	CTCTTC	4 cut(s)	222, 624, 1115, 1211
Eco130I	CCWWGG	1 cut(s)	1232
Eco31I	GGTCTC	2 cut(s)	444, 1122
Eco47I	GGWCC	1 cut(s)	1057
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	1057
EcoRII	CCWGG	2 cut(s)	1237, 1504
EcoT14I	CCWWGG	1 cut(s)	1232
EcoT22I	ATGCAT	1 cut(s)	1367
ErhI	CCWWGG	1 cut(s)	1232
FaeI	CATG	8 cut(s)	83, 377, 695, 1008, 1024, 1355, 1369, 1519
FalI	AAGNNNNNCTT	8 cut(s)	43, 75, 710, 742, 1216, 1248, 1415, 1447
FaqI	GGGAC	2 cut(s)	94, 318
FatI	CATG	8 cut(s)	79, 373, 691, 1004, 1020, 1351, 1365, 1515
FbaI	TGATCA	1 cut(s)	222
FspBI	CTAG	2 cut(s)	615, 1346
FspI	TGCGCA	1 cut(s)	1279
GlaI	GCGC	1 cut(s)	1279
HaeIII	GGCC	2 cut(s)	1237, 1588
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	1280
Hin1II	CATG	8 cut(s)	83, 377, 695, 1008, 1024, 1355, 1369, 1519
Hin6I	GCGC	1 cut(s)	1278
HinP1I	GCGC	1 cut(s)	1278
HindIII	AAGCTT	1 cut(s)	1269
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	5 cut(s)	167, 217, 934, 1253, 1262
Hpy166II	GTNNAC	2 cut(s)	356, 942
Hpy188I	TCNGA	6 cut(s)	222, 504, 576, 1066, 1616, 1621
Hpy188III	TCNNGA	9 cut(s)	80, 407, 641, 661, 692, 1224, 1352, 1382, 1640
Hpy8I	GTNNAC	2 cut(s)	356, 942
HpyAV	CCTTC	5 cut(s)	770, 987, 1241, 1282, 1637
HpyCH4III	ACNGT	4 cut(s)	97, 255, 347, 360
HpyCH4IV	ACGT	1 cut(s)	836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	723, 1277, 1403, 1585
HpyF3I	CTNAG	6 cut(s)	441, 624, 755, 764, 977, 1632
HpySE526I	ACGT	1 cut(s)	836
Hsp92II	CATG	8 cut(s)	83, 377, 695, 1008, 1024, 1355, 1369, 1519
HspAI	GCGC	1 cut(s)	1278
KpnI	GGTACC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	222
LguI	GCTCTTC	1 cut(s)	1115
LmnI	GCTCC	2 cut(s)	1043, 1183
MaeI	CTAG	2 cut(s)	615, 1346
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	3 cut(s)	186, 619, 824
MbiI	CCGCTC	1 cut(s)	1125
MflI	RGATCY	4 cut(s)	313, 459, 760, 1636
MluCI	AATT	9 cut(s)	419, 487, 564, 606, 903, 1014, 1452, 1561, 1690
MlyI	GAGTC	3 cut(s)	300, 689, 1616
MnlI	CCTC	9 cut(s)	225, 238, 447, 498, 619, 625, 983, 1142, 1627
Mph1103I	ATGCAT	1 cut(s)	1367
MseI	TTAA	8 cut(s)	555, 893, 1011, 1074, 1203, 1470, 1560, 1694
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	1202
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	1239, 1506
Mva1269I	GAATGC	1 cut(s)	1180
MvaI	CCWGG	2 cut(s)	1239, 1506
MwoI	GCNNNNNNNGC	4 cut(s)	723, 1277, 1403, 1585
NlaIII	CATG	8 cut(s)	83, 377, 695, 1008, 1024, 1355, 1369, 1519
NlaIV	GGNNCC	3 cut(s)	344, 999, 1045
NmuCI	GTSAC	1 cut(s)	824
NsbI	TGCGCA	1 cut(s)	1279
NsiI	ATGCAT	1 cut(s)	1367
PagI	TCATGA	3 cut(s)	79, 691, 1351
PaqCI	CACCTGC	1 cut(s)	743
PciSI	GCTCTTC	1 cut(s)	1115
PctI	GAATGC	1 cut(s)	1180
PfeI	GAWTC	7 cut(s)	4, 194, 637, 748, 1264, 1378, 1426
PfoI	TCCNGGA	1 cut(s)	1504
PleI	GAGTC	3 cut(s)	300, 689, 1616
PpsI	GAGTC	3 cut(s)	300, 689, 1616
PpuMI	RGGWCCY	1 cut(s)	1057
Psp5II	RGGWCCY	1 cut(s)	1057
Psp6I	CCWGG	2 cut(s)	1237, 1504
PspGI	CCWGG	2 cut(s)	1237, 1504
PspN4I	GGNNCC	3 cut(s)	344, 999, 1045
PspPI	GGNCC	2 cut(s)	1057, 1586
PspPPI	RGGWCCY	1 cut(s)	1057
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	1658
PsuI	RGATCY	4 cut(s)	313, 459, 760, 1636
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	6 cut(s)	128, 344, 426, 835, 1167, 1657
RsaNI	GTAC	6 cut(s)	127, 343, 425, 834, 1166, 1656
RseI	CAYNNNNRTG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	1115
SaqAI	TTAA	8 cut(s)	555, 893, 1011, 1074, 1203, 1470, 1560, 1694
Sau96I	GGNCC	2 cut(s)	1057, 1586
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	3 cut(s)	300, 689, 1616
ScrFI	CCNGG	2 cut(s)	1239, 1506
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	1057
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	1202
SmoI	CTYRAG	1 cut(s)	1202
Sse9I	AATT	9 cut(s)	419, 487, 564, 606, 903, 1014, 1452, 1561, 1690
SsiI	CCGC	2 cut(s)	912, 1125
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	2 cut(s)	615, 1346
StyD4I	CCNGG	2 cut(s)	1237, 1504
StyI	CCWWGG	1 cut(s)	1232
TaaI	ACNGT	4 cut(s)	97, 255, 347, 360
TaiI	ACGT	1 cut(s)	839
TasI	AATT	9 cut(s)	419, 487, 564, 606, 903, 1014, 1452, 1561, 1690
TatI	WGTACW	2 cut(s)	424, 1165
TfiI	GAWTC	7 cut(s)	4, 194, 637, 748, 1264, 1378, 1426
Tru1I	TTAA	8 cut(s)	555, 893, 1011, 1074, 1203, 1470, 1560, 1694
Tru9I	TTAA	8 cut(s)	555, 893, 1011, 1074, 1203, 1470, 1560, 1694
TscAI	CASTG	6 cut(s)	100, 386, 449, 475, 516, 829
TseFI	GTSAC	1 cut(s)	824
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	9 cut(s)	17, 174, 837, 866, 1092, 1187, 1229, 1260, 1513
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	6 cut(s)	100, 386, 449, 475, 516, 829
Vha464I	CTTAAG	1 cut(s)	1202
VpaK11BI	GGWCC	1 cut(s)	1057
XapI	RAATTY	4 cut(s)	903, 1014, 1452, 1690
XspI	CTAG	2 cut(s)	615, 1346
ZrmI	AGTACT	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	1367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.