Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Forward (+)

26613574 .. 26615638

Gene Structure 2065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCCATGTCGATCAGAACAATCACAACAACAACAGCACTTACTCGCAGCAATTCTAGATCCTCACTACTTCATCCCCACCTCAGATTAAACCAGAAGGATTCATGTCATTTTCTCGGTAACCGGAGCTTGCGATCGTGCAGTAGTACGAGCCTTCAGAGAGTTCAGATTGGCAGCAAGATTCTGTTAATGGTGGTCAACAGCGTTGACCCCGGCAGCCCTCCTCTCCCTTCTGATCCTTCCGGTGGTTCTTGGAAAATGTGGCTTTTGGGTGTGCTTTTCTCAGTAATTATACCCTTTACGAAGAACAAATGGTACCCGTTACTCAAGTTGAAAGAACAAGTGGAGACGGCGCTGGATGCCGCAGAAGAAGTGGCGGAGCTCGTGGAGAAGGTCTCCGACAAAGTGGAGGAGGTCGCCGATGAGATCGGCAACCATCTTCCCGAAGGTAAACTTCGACATGCTGCCATGCTTGTGGAGGAATTAGCTGACAAAACGGGCAAGGCTGCGGCCCTAGCGGATGATATCATTGAGAAGACTGAGGAGGTTGAGAGAGAGGTAGATTCTATCATTGAAAAGGCCAATGAGCTAAAGAAGGAAGACAAAATTAAAGAAGCGAGTACCAAGCAAGCTGCAGATACTACTGAAAATGAGACGGTTGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.44

Weight (kDa)

5.37

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AciI	CCGC	4 cut(s)	363, 377, 509, 518
AclWI	GGATC	2 cut(s)	54, 230
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	148, 317, 622
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	334, 575
AluBI	AGCT	5 cut(s)	129, 382, 488, 589, 632
AluI	AGCT	5 cut(s)	129, 382, 488, 589, 632
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	3 cut(s)	341, 400, 647
AlwI	GGATC	2 cut(s)	54, 230
AoxI	GGCC	3 cut(s)	3, 510, 579
ApeKI	GCWGC	6 cut(s)	48, 174, 216, 464, 506, 632
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	2 cut(s)	542, 606
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	6 cut(s)	60, 186, 228, 451, 493, 619
BccI	CCATC	1 cut(s)	444
BceAI	ACGGC	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	341, 400, 647
BfaI	CTAG	2 cut(s)	57, 515
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	8 cut(s)	49, 175, 217, 363, 465, 507, 510, 633
BlsI	GCNGC	8 cut(s)	50, 176, 218, 364, 466, 508, 511, 634
Bme1390I	CCNGG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	542, 606
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	2 cut(s)	123, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	3 cut(s)	73, 364, 526
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	97, 297, 531
BseRI	GAGGAG	3 cut(s)	213, 425, 557
BseXI	GCAGC	6 cut(s)	60, 186, 228, 451, 493, 619
BsgI	GTGCAG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	5, 512, 581
BshNI	GGYRCC	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	124, 213, 243
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	3 cut(s)	341, 400, 647
BsmBI	CGTCTC	2 cut(s)	341, 647
BsnI	GGCC	3 cut(s)	5, 512, 581
Bso31I	GGTCTC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	5 cut(s)	12, 59, 134, 235, 426
BspACI	CCGC	4 cut(s)	363, 377, 509, 518
BspANI	GGCC	3 cut(s)	5, 512, 581
BspCNI	CTCAG	3 cut(s)	96, 296, 532
BspLI	GGNNCC	1 cut(s)	317
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	2 cut(s)	54, 230
BspT107I	GGYRCC	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	5 cut(s)	12, 59, 134, 235, 426
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	658
BstC8I	GCNNGC	2 cut(s)	131, 630
BstDEI	CTNAG	3 cut(s)	83, 283, 540
BstEII	GGTNACC	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	73, 364, 526
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	5 cut(s)	15, 62, 137, 238, 429
BstMAI	GTCTC	3 cut(s)	341, 400, 647
BstMBI	GATC	5 cut(s)	12, 59, 134, 235, 426
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 515
BstNSI	RCATGY	1 cut(s)	464
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	6 cut(s)	60, 186, 228, 451, 493, 619
BstV2I	GAAGAC	2 cut(s)	542, 606
BstX2I	RGATCY	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	5, 512, 581
BtsCI	GGATG	3 cut(s)	73, 364, 526
Cac8I	GCNNGC	2 cut(s)	131, 630
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	3 cut(s)	147, 316, 621
CviAII	CATG	4 cut(s)	7, 105, 461, 469
CviQI	GTAC	3 cut(s)	147, 316, 621
DdeI	CTNAG	3 cut(s)	83, 283, 540
DpnI	GATC	5 cut(s)	14, 61, 136, 237, 428
DpnII	GATC	5 cut(s)	12, 59, 134, 235, 426
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	384
Esp3I	CGTCTC	2 cut(s)	341, 647
FaeI	CATG	4 cut(s)	10, 108, 464, 472
FaiI	YATR	5 cut(s)	8, 106, 293, 462, 470
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FatI	CATG	4 cut(s)	6, 104, 460, 468
Fnu4HI	GCNGC	8 cut(s)	49, 175, 217, 363, 465, 507, 510, 633
FokI	GGATG	3 cut(s)	60, 371, 533
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	8 cut(s)	49, 175, 217, 363, 465, 507, 510, 633
FspBI	CTAG	2 cut(s)	57, 515
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	8 cut(s)	49, 175, 217, 363, 465, 507, 510, 633
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	5, 512, 581
HapII	CCGG	3 cut(s)	124, 213, 243
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	10, 108, 464, 472
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	199, 208
HindII	GTYRAC	2 cut(s)	199, 208
HinfI	GANTC	3 cut(s)	101, 181, 563
HpaII	CCGG	3 cut(s)	124, 213, 243
Hpy166II	GTNNAC	3 cut(s)	199, 208, 452
Hpy188I	TCNGA	6 cut(s)	17, 86, 159, 168, 235, 400
Hpy188III	TCNNGA	2 cut(s)	57, 443
Hpy8I	GTNNAC	3 cut(s)	199, 208, 452
HpyAV	CCTTC	7 cut(s)	91, 164, 240, 249, 385, 440, 589
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4V	TGCA	3 cut(s)	141, 635, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 515
HpyF3I	CTNAG	3 cut(s)	83, 283, 540
Hsp92II	CATG	4 cut(s)	10, 108, 464, 472
HspAI	GCGC	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	12, 59, 134, 235, 426
LmnI	GCTCC	2 cut(s)	126, 379
LpnPI	CCDG	5 cut(s)	107, 137, 226, 256, 341
Lsp1109I	GCAGC	6 cut(s)	60, 186, 228, 451, 493, 619
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	57, 515
MaeIII	GTNAC	2 cut(s)	119, 321
MalI	GATC	5 cut(s)	14, 61, 136, 237, 428
MboI	GATC	5 cut(s)	12, 59, 134, 235, 426
MboII	GAAGA	5 cut(s)	316, 380, 431, 547, 611
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	384
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	52, 288, 482, 606
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	423
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	89, 188, 609
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	124, 213, 243
MspR9I	CCNGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	359, 515
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	5 cut(s)	12, 59, 134, 235, 426
NlaIII	CATG	4 cut(s)	10, 108, 464, 472
NlaIV	GGNNCC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	101, 181, 563
PkrI	GCNGC	8 cut(s)	50, 176, 218, 364, 466, 508, 511, 634
Ple19I	CGATCG	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	384
PspEI	GGTNACC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	511
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PstI	CTGCAG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	59
PvuI	CGATCG	1 cut(s)	137
RsaI	GTAC	3 cut(s)	148, 317, 622
RsaNI	GTAC	3 cut(s)	147, 316, 621
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	89, 188, 609
SatI	GCNGC	8 cut(s)	49, 175, 217, 363, 465, 507, 510, 633
Sau3AI	GATC	5 cut(s)	12, 59, 134, 235, 426
Sau96I	GGNCC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	52, 288, 482, 606
SsiI	CCGC	4 cut(s)	363, 377, 509, 518
SspMI	CTAG	2 cut(s)	57, 515
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	658
TaqI	TCGA	2 cut(s)	11, 457
TasI	AATT	4 cut(s)	52, 288, 482, 606
TauI	GCSGC	2 cut(s)	365, 512
TfiI	GAWTC	3 cut(s)	101, 181, 563
Tru1I	TTAA	3 cut(s)	89, 188, 609
Tru9I	TTAA	3 cut(s)	89, 188, 609
TseI	GCWGC	6 cut(s)	48, 174, 216, 464, 506, 632
TspDTI	ATGAA	2 cut(s)	62, 93
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	2 cut(s)	57, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.