Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Reverse (-)

16201373 .. 16202775

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCATGTCGATCAGAAGCTCAATAAGTTCTCCTTGCAGTTCTAGACATTTGCAGGCATCAGTTTTAGGACCTAGTTGTCTGAGTACTAATCATCGGGACCGATGTCGTTTTCTCGGAAATCGGAGTTTCTTGCAGCCCCTTATCATGAAGGTCGAAAGTGGTAGCCGGAAAAAGATGGCCGTGGTTGTCAATAGTGTTGAACCAGGAGCGCCTCTTCCTTCTGATCCTTCGGGTATTAATTGGAAACTATGGCTTGTGGGGATGCTTTTCTCAGTAGCTATACCCTTTTGGAAGAACAAATGGTGGCCATTGCAAAATATAAAAGCCCCAATATTATGTACAGAGAGATTTTCAACGGCGCTGGATACAGTGGAAGATGTGGCAGAAACGGTAGAGAAGGTGGCTGGGCAAGTGGAGAAGGTGGCTGACGACATTGCCGATCATCTTCCGGAAGGGAGACTTCAAGAGGCAGCAAGGATTGTTGAAAGCGTGGCAAGAGAAGCAGGCAAGGATGCTGCGCTAGCAGATGATCTCATTGAGAAGGTTGAGGAAGTCGAAAAGGAGGTGGATTCTATCATTGAGCAAGCCAATAAGAAAATCGAAGAAGAAAATGATACCGAAGATCAGACGGCAAAAATTAAAGATGCGACTGAGATTAAAACAAAGATAGCAGAGATCAAAGAAAAGAATGCTGTTAAAAAAGAGACAATAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.59

Weight (kDa)

5.47

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	451
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	3 cut(s)	3, 180, 308
AfaI	GTAC	2 cut(s)	88, 343
AgsI	TTSAA	4 cut(s)	203, 357, 467, 488
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	21, 281, 720
AluI	AGCT	3 cut(s)	21, 281, 720
Alw26I	GTCTC	2 cut(s)	454, 701
AlwI	GGATC	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	3 cut(s)	3, 180, 308
ApeKI	GCWGC	3 cut(s)	136, 473, 518
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	3 cut(s)	214, 364, 523
AspS9I	GGNCC	2 cut(s)	71, 100
AsuNHI	GCTAGC	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	71, 100
BalI	TGGCCA	2 cut(s)	5, 310
BbvI	GCAGC	3 cut(s)	148, 485, 505
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	3 cut(s)	167, 375, 648
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	454, 701
BfaI	CTAG	3 cut(s)	45, 75, 524
BfoI	RGCGCY	2 cut(s)	215, 365
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	137, 474, 519
BlsI	GCNGC	3 cut(s)	138, 475, 520
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	71, 100
BmgT120I	GGNCC	2 cut(s)	71, 100
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	4 cut(s)	68, 255, 505, 637
BmtI	GCTAGC	1 cut(s)	527
BoxI	GACNNNNGTC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	451
Bse3DI	GCAATG	2 cut(s)	311, 435
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	270, 520
BseMI	GCAATG	2 cut(s)	311, 435
BseMII	CTCAG	3 cut(s)	74, 288, 645
BseXI	GCAGC	3 cut(s)	148, 485, 505
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	3 cut(s)	5, 182, 310
BsiSI	CCGG	2 cut(s)	169, 452
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	454, 701
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	5, 182, 310
Bsp13I	TCCGGA	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	341
Bsp143I	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
BspANI	GGCC	3 cut(s)	5, 182, 310
BspCNI	CTCAG	3 cut(s)	75, 287, 646
BspEI	TCCGGA	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	101
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	311, 435
BsrGI	TGTACA	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	373, 394
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	57, 508, 525, 588
BstDEI	CTNAG	3 cut(s)	83, 274, 654
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	270, 520
BstH2I	RGCGCY	2 cut(s)	215, 365
BstHHI	GCGC	3 cut(s)	214, 364, 523
BstKTI	GATC	6 cut(s)	15, 229, 445, 535, 628, 681
BstMAI	GTCTC	2 cut(s)	454, 701
BstMBI	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 524
BstNI	CCWGG	1 cut(s)	207
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	148, 485, 505
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	5, 182, 310
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	270, 520
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	4 cut(s)	57, 508, 525, 588
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	3 cut(s)	214, 364, 523
Cfr13I	GGNCC	2 cut(s)	71, 100
Csp6I	GTAC	2 cut(s)	87, 342
CviAII	CATG	2 cut(s)	7, 148
CviQI	GTAC	2 cut(s)	87, 342
DdeI	CTNAG	3 cut(s)	83, 274, 654
DpnI	GATC	6 cut(s)	14, 228, 444, 534, 627, 680
DpnII	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	3 cut(s)	3, 180, 308
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	71, 100
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	2 cut(s)	10, 151
FaiI	YATR	6 cut(s)	8, 149, 253, 284, 323, 340
FalI	AAGNNNNNCTT	4 cut(s)	19, 51, 447, 479
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	2 cut(s)	6, 147
Fnu4HI	GCNGC	3 cut(s)	137, 474, 519
FokI	GGATG	2 cut(s)	277, 527
Fsp4HI	GCNGC	3 cut(s)	137, 474, 519
FspBI	CTAG	3 cut(s)	45, 75, 524
GlaI	GCGC	3 cut(s)	213, 363, 522
GluI	GCNGC	3 cut(s)	137, 474, 519
GsaI	CCCAGC	1 cut(s)	411
HaeII	RGCGCY	2 cut(s)	215, 365
HaeIII	GGCC	3 cut(s)	5, 182, 310
HapII	CCGG	2 cut(s)	169, 452
HhaI	GCGC	3 cut(s)	214, 364, 523
Hin1II	CATG	2 cut(s)	10, 151
Hin6I	GCGC	3 cut(s)	212, 362, 521
HinP1I	GCGC	3 cut(s)	212, 362, 521
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	2 cut(s)	169, 452
Hpy188I	TCNGA	6 cut(s)	17, 84, 119, 126, 226, 630
Hpy188III	TCNNGA	5 cut(s)	45, 98, 148, 452, 467
HpyAV	CCTTC	7 cut(s)	145, 231, 240, 394, 415, 449, 538
HpyCH4III	ACNGT	2 cut(s)	373, 394
HpyCH4V	TGCA	4 cut(s)	39, 55, 136, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 524
HpyF3I	CTNAG	3 cut(s)	83, 274, 654
Hsp92II	CATG	2 cut(s)	10, 151
HspAI	GCGC	3 cut(s)	212, 362, 521
Kpn2I	TCCGGA	1 cut(s)	451
Kzo9I	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	8 cut(s)	41, 182, 192, 219, 350, 393, 465, 492
Lsp1109I	GCAGC	3 cut(s)	148, 485, 505
LweI	GCATC	4 cut(s)	68, 255, 505, 637
MaeI	CTAG	3 cut(s)	45, 75, 524
MalI	GATC	6 cut(s)	14, 228, 444, 534, 627, 680
MboI	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
MboII	GAAGA	7 cut(s)	209, 307, 389, 440, 617, 620, 635
MlsI	TGGCCA	2 cut(s)	5, 310
MluCI	AATT	2 cut(s)	241, 639
MluNI	TGGCCA	2 cut(s)	5, 310
MnlI	CCTC	4 cut(s)	225, 463, 544, 559
Mox20I	TGGCCA	2 cut(s)	5, 310
MroI	TCCGGA	1 cut(s)	451
MscI	TGGCCA	2 cut(s)	5, 310
MseI	TTAA	4 cut(s)	240, 642, 660, 699
Msp20I	TGGCCA	2 cut(s)	5, 310
MspI	CCGG	2 cut(s)	169, 452
MspR9I	CCNGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	503, 524
NdeII	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	2 cut(s)	10, 151
NlaIV	GGNNCC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	138, 475, 520
PpuMI	RGGWCCY	1 cut(s)	71
PshAI	GACNNNNGTC	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	71, 100
PspPPI	RGGWCCY	1 cut(s)	71
RsaI	GTAC	2 cut(s)	88, 343
RsaNI	GTAC	2 cut(s)	87, 342
SaqAI	TTAA	4 cut(s)	240, 642, 660, 699
SatI	GCNGC	3 cut(s)	137, 474, 519
Sau3AI	GATC	6 cut(s)	12, 226, 442, 532, 625, 678
Sau96I	GGNCC	2 cut(s)	71, 100
ScaI	AGTACT	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	9 cut(s)	23, 76, 156, 283, 405, 426, 549, 570, 722
SfaNI	GCATC	4 cut(s)	68, 255, 505, 637
SinI	GGWCC	2 cut(s)	71, 100
Sse9I	AATT	2 cut(s)	241, 639
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	3 cut(s)	45, 75, 524
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	373, 394
TaqI	TCGA	4 cut(s)	11, 156, 558, 603
TaqII	GACCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	241, 639
TatI	WGTACW	2 cut(s)	86, 341
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	4 cut(s)	240, 642, 660, 699
Tru9I	TTAA	4 cut(s)	240, 642, 660, 699
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	3 cut(s)	136, 473, 518
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	71, 100
VspI	ATTAAT	1 cut(s)	240
XbaI	TCTAGA	1 cut(s)	44
XspI	CTAG	3 cut(s)	45, 75, 524
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.