Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Forward (+)

64491714 .. 64493554

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG452900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTGCTTATTAGTTTGTATTTATATATGCAGGAAAATGTGGCTTTTGGGTGTACTTTTCTCACTAATTATACCCTTTACGAAGAACAAATGGTACCCATTACTCACGTTGAAAGACCGAGTGGAGACGGCGATGGATGCCGCAGAAGAAGTGGCGGAGCTCGTGGAGAAGGTGTCGGAGAAAGTGGAGGAGGTCGCGGATGATATCGGCAATCATCTTCCCGAAGGTAAACTTCGACATGCGGCCGTGCTTGTGGAGGAATTAGCTGACAAAACAGGCAAGGCTGCGGCCATGGCGGATGATATCATTGAGAAGGTTGAGGAAGTGGAGAAAGAGGTAGACTCCATCACTGACAAGGCCAACGAGAAAAAGAAAGAAGACAAAATCAAAGAAGCGAGTACCAAGCAAGATAATAGTATAAAAAATGAGACAGTTGCAAACTGCAACGAGAAAAAGAAAGAAGACAAAATCAAAGAAGCGAGTACCAAGCAAGATAATAGTATAAAAAATGAGACAGTTGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.69

Weight (kDa)

5.03

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	197
AciI	CCGC	6 cut(s)	141, 155, 197, 242, 287, 296
AcoI	YGGCCR	2 cut(s)	243, 288
AfaI	GTAC	4 cut(s)	54, 95, 400, 484
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	2 cut(s)	160, 266
AluI	AGCT	2 cut(s)	160, 266
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	3 cut(s)	119, 422, 506
AoxI	GGCC	3 cut(s)	243, 288, 357
ApeKI	GCWGC	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	384, 468
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	2 cut(s)	127, 353
BceAI	ACGGC	2 cut(s)	144, 230
BcoDI	GTCTC	3 cut(s)	119, 422, 506
BisI	GCNGC	4 cut(s)	141, 243, 285, 288
BlsI	GCNGC	4 cut(s)	142, 244, 286, 289
BmiI	GGNNCC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	384, 468
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	142, 205, 304
BseRI	GAGGAG	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	245, 290, 359
BshNI	GGYRCC	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	162
BsmAI	GTCTC	3 cut(s)	119, 422, 506
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	245, 290, 359
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	6 cut(s)	141, 155, 197, 242, 287, 296
BspANI	GGCC	3 cut(s)	245, 290, 359
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	433, 517
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	142, 205, 304
BstFNI	CGCG	1 cut(s)	197
BstMAI	GTCTC	3 cut(s)	119, 422, 506
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 293
BstNSI	RCATGY	1 cut(s)	242
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	384, 468
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	245, 290, 359
BtgI	CCRYGG	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	142, 205, 304
BtsIMutI	CAGTG	1 cut(s)	348
Csp6I	GTAC	4 cut(s)	53, 94, 399, 483
CviAII	CATG	2 cut(s)	239, 292
CviJI	RGCY	7 cut(s)	43, 160, 245, 266, 284, 290, 359
CviKI_1	RGCY	7 cut(s)	43, 160, 245, 266, 284, 290, 359
CviQI	GTAC	4 cut(s)	53, 94, 399, 483
EaeI	YGGCCR	2 cut(s)	243, 288
EagI	CGGCCG	1 cut(s)	243
EciI	GGCGGA	2 cut(s)	170, 311
Ecl136II	GAGCTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	162
Eco32I	GATATC	2 cut(s)	205, 304
Eco52I	CGGCCG	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRV	GATATC	2 cut(s)	205, 304
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	242, 295
FaiI	YATR	8 cut(s)	24, 26, 28, 71, 240, 293, 419, 503
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	2 cut(s)	238, 291
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	141, 243, 285, 288
FokI	GGATG	3 cut(s)	149, 212, 311
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	141, 243, 285, 288
GluI	GCNGC	4 cut(s)	141, 243, 285, 288
HaeIII	GGCC	3 cut(s)	245, 290, 359
Hin1II	CATG	2 cut(s)	242, 295
HinfI	GANTC	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	53, 230, 340
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	3 cut(s)	53, 230, 340
HpyAV	CCTTC	3 cut(s)	163, 218, 307
HpyCH4III	ACNGT	2 cut(s)	433, 517
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	30, 437, 444, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 293
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	242, 295
KpnI	GGTACC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	16, 261
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	107
MboII	GAAGA	5 cut(s)	94, 158, 209, 389, 473
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	2 cut(s)	66, 260
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	181, 184, 250, 313, 328
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	137, 293
NcoI	CCATGG	1 cut(s)	291
NlaIII	CATG	2 cut(s)	242, 295
NlaIV	GGNNCC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	142, 244, 286, 289
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	95
PsrI	GAACNNNNNNTAC	2 cut(s)	77, 109
RsaI	GTAC	4 cut(s)	54, 95, 400, 484
RsaNI	GTAC	4 cut(s)	53, 94, 399, 483
SacI	GAGCTC	1 cut(s)	162
SatI	GCNGC	4 cut(s)	141, 243, 285, 288
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	8 cut(s)	110, 162, 174, 195, 229, 268, 318, 339
SfaNI	GCATC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	66, 260
SsiI	CCGC	6 cut(s)	141, 155, 197, 242, 287, 296
SstI	GAGCTC	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	433, 517
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	235
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	66, 260
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	3 cut(s)	143, 245, 290
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	1 cut(s)	284
TspRI	CASTG	1 cut(s)	355
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.