Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Forward (+)

50295933 .. 50297372

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG437200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCATGTCCATCAGAACAATCACAACAACAACAGCTCTTACTCCCAGCAATTCTAAATCATCACAACTTCATCACCACCTCAGATTAAACCAGAGAGATTCATGTCGTTTTCTCGGAAACCGGAGCTTGCCATCGTGCAATACGAGCCTTCAGAGAGTTCAGATTGGCAGCAAGATCCTGCTAATGGTGGTCAACAGCGTTGACCCCCGCACCCCTCCTCTTCCTTCTGATCCTTCCGGTGGTTCTTGGAAAATGTGGCTTTTGGGTGTACTTTTCTCACTAATTATACCCTTTACGAAGAACAAATGGTACCCATTACTCACGTTGAAAGACCGAGTGGAGACGGCGATGGATGCCGCAGAAGAAGTGGCGGAGCTCGTGGAGAAGGTGTCCGACAAAGTGGAGGAGGTCGCGGATGATATCGGCAATCATCTTCCCGAAGGTAAACTTCGACATGCGGCCGTGCTTGTGGAGGAATTAGCTGACAAAACAGGCAAGGCTGCGGCCATGGCGGATGATATCATTGAGAAGGTTGAGGAAGTGGAGAAAGAGGTAGACTCCATCACTGACAAGGCCAACGAGAAAAAGAAAGAAGACAAAATCAAAGAAGCGAGTACCAAGCAAGATAATAGTATCAAAAATAATGAGACAGTTGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.49

Weight (kDa)

5.81

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	416
AciI	CCGC	7 cut(s)	211, 360, 374, 416, 461, 506, 515
AclWI	GGATC	2 cut(s)	172, 227
AcoI	YGGCCR	3 cut(s)	3, 462, 507
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	273, 314, 619
AfiI	CCNNNNNNNGG	2 cut(s)	187, 242
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	4 cut(s)	38, 129, 379, 485
AluI	AGCT	4 cut(s)	38, 129, 379, 485
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	338, 644
AlwI	GGATC	2 cut(s)	172, 227
AoxI	GGCC	4 cut(s)	3, 462, 507, 576
ApeKI	GCWGC	2 cut(s)	171, 503
Asp718I	GGTACC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	183, 490
BccI	CCATC	4 cut(s)	20, 142, 346, 572
BceAI	ACGGC	2 cut(s)	363, 449
BcoDI	GTCTC	2 cut(s)	338, 644
BisI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
BlsI	GCNGC	5 cut(s)	173, 361, 463, 505, 508
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	603
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	2 cut(s)	123, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 242
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	3 cut(s)	361, 424, 523
BseLI	CCNNNNNNNGG	2 cut(s)	187, 242
BseMII	CTCAG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	210, 422
BseX3I	CGGCCG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	183, 490
BseYI	CCCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	4 cut(s)	5, 464, 509, 578
BshNI	GGYRCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	124, 240
BslI	CCNNNNNNNGG	2 cut(s)	187, 242
BsmAI	GTCTC	2 cut(s)	338, 644
BsmBI	CGTCTC	1 cut(s)	338
BsnI	GGCC	4 cut(s)	5, 464, 509, 578
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	177, 232
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	7 cut(s)	211, 360, 374, 416, 461, 506, 515
BspANI	GGCC	4 cut(s)	5, 464, 509, 578
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	172, 227
BspT107I	GGYRCC	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	2 cut(s)	177, 232
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	655
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	361, 424, 523
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	2 cut(s)	180, 235
BstMAI	GTCTC	2 cut(s)	338, 644
BstMBI	GATC	2 cut(s)	177, 232
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 356, 512
BstNSI	RCATGY	1 cut(s)	461
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	183, 490
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	462
BsuRI	GGCC	4 cut(s)	5, 464, 509, 578
BtgI	CCRYGG	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	361, 424, 523
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	272, 313, 618
CviAII	CATG	4 cut(s)	7, 105, 458, 511
CviQI	GTAC	3 cut(s)	272, 313, 618
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	179, 234
DpnII	GATC	2 cut(s)	177, 232
EaeI	YGGCCR	3 cut(s)	3, 462, 507
EagI	CGGCCG	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	2 cut(s)	389, 530
Ecl136II	GAGCTC	1 cut(s)	379
EclXI	CGGCCG	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	381
Eco32I	GATATC	2 cut(s)	424, 523
Eco52I	CGGCCG	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	379
EcoRV	GATATC	2 cut(s)	424, 523
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	4 cut(s)	10, 108, 461, 514
FaiI	YATR	5 cut(s)	8, 106, 290, 459, 512
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	4 cut(s)	6, 104, 457, 510
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
FokI	GGATG	3 cut(s)	368, 431, 530
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
GluI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
GsaI	CCCAGC	1 cut(s)	51
HaeIII	GGCC	4 cut(s)	5, 464, 509, 578
HapII	CCGG	2 cut(s)	124, 240
Hin1II	CATG	4 cut(s)	10, 108, 461, 514
HincII	GTYRAC	2 cut(s)	196, 205
HindII	GTYRAC	2 cut(s)	196, 205
HinfI	GANTC	2 cut(s)	101, 560
HpaII	CCGG	2 cut(s)	124, 240
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	5 cut(s)	196, 205, 272, 449, 559
Hpy188I	TCNGA	7 cut(s)	17, 86, 119, 156, 165, 232, 397
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	5 cut(s)	196, 205, 272, 449, 559
HpyAV	CCTTC	6 cut(s)	161, 237, 246, 382, 437, 526
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	141, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 356, 512
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	4 cut(s)	10, 108, 461, 514
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	177, 232
LmnI	GCTCC	2 cut(s)	126, 376
LpnPI	CCDG	6 cut(s)	61, 107, 137, 194, 253, 480
Lsp1109I	GCAGC	2 cut(s)	183, 490
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	1 cut(s)	326
MalI	GATC	2 cut(s)	179, 234
MboI	GATC	2 cut(s)	177, 232
MboII	GAAGA	5 cut(s)	215, 313, 377, 428, 608
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	52, 285, 479
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	8 cut(s)	92, 228, 231, 400, 403, 469, 532, 547
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	124, 240
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	3 cut(s)	147, 356, 512
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	177, 232
NlaIII	CATG	4 cut(s)	10, 108, 461, 514
NlaIV	GGNNCC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	5 cut(s)	173, 361, 463, 505, 508
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	296, 328
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	273, 314, 619
RsaNI	GTAC	3 cut(s)	272, 313, 618
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
Sau3AI	GATC	2 cut(s)	177, 232
SchI	GAGTC	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	346
Sse9I	AATT	3 cut(s)	52, 285, 479
SsiI	CCGC	7 cut(s)	211, 360, 374, 416, 461, 506, 515
SstI	GAGCTC	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	655
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	454
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	52, 285, 479
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	3 cut(s)	362, 464, 509
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	2 cut(s)	171, 503
TspDTI	ATGAA	2 cut(s)	62, 93
TspRI	CASTG	1 cut(s)	574
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.