Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Reverse (-)

16229425 .. 16232377

Gene Structure 2953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16330.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCAAGTCGATCAGAAGCTCAATAAGTTCTTGCAGTTCTAGACATTTGCAGGCTTCAGTTTTAAGACCTAGTTATCTGAGTGCTAATGACCGGGACCGATGTCGTTTGCTCGGAAATCGGAGGTTCTTGCAGCCCCTTATCATGAAGGTCGAAAGTGGTAGCCGGAAAAAGATGGACGTGGTTGTCAATAGTGTTGAACCAGGAAGTCCTCTTCCTTCTGATCCTTCCGGTACTGATTGGAAACTATGGCTTGTGGGGATGCTTTTCACAGTGGTTATACCCTTTTGGAAGAACAAATGGTGGCCATTGCTAAAATTCAAAGAGAGATTTTCAACGGCGCTGGATACAGTGGAAGATGTGGCAGAAATGGTAGAGAAGGTGGCTGGAGAAGTGGAGAAGGTGGCTGACGACATTGCCGATCATCTTCCGGAAGGGAAACTTCAAAGGGCAGCAAGAATTGTTGAGAGTGTGGCAAGAGAAGCAGGCACGGATGCTGCGCTAGCAGATGATCTCATCGAGAAGGTTGAGGAAGTCGAAAAGGAGGTGGATTATATCATTGAGCAAGCCAATCAGAAAATCAAAGAAGAAAATGATACCGAAAATCAGACAGCAAAAATCAAAGATGCGAGTGAGATTAAAACCAAGATAGCAGAGATCAAAGAAACGAATGTTGTTAAAAAAGAGACAACAAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.21

Weight (kDa)

5.68

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	430
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	2 cut(s)	3, 305
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	200, 322, 336, 446
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	2 cut(s)	21, 699
AluI	AGCT	2 cut(s)	21, 699
Alw26I	GTCTC	1 cut(s)	680
AlwI	GGATC	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	2 cut(s)	3, 305
ApeKI	GCWGC	3 cut(s)	133, 452, 497
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	343, 502
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	95
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	97
BalI	TGGCCA	2 cut(s)	5, 307
BbvI	GCAGC	3 cut(s)	145, 464, 484
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	680
BfaI	CTAG	3 cut(s)	42, 72, 503
BfoI	RGCGCY	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	134, 453, 498
BlsI	GCNGC	3 cut(s)	135, 454, 499
Bme1390I	CCNGG	2 cut(s)	95, 204
Bme18I	GGWCC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	95, 204
BmsI	GCATC	3 cut(s)	252, 484, 616
BmtI	GCTAGC	1 cut(s)	506
BoxI	GACNNNNGTC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	95
BsaWI	WCCGGW	2 cut(s)	230, 430
Bse3DI	GCAATG	2 cut(s)	308, 414
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	267, 499
BseMI	GCAATG	2 cut(s)	308, 414
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	145, 464, 484
BshFI	GGCC	2 cut(s)	5, 307
BsiSI	CCGG	4 cut(s)	94, 166, 231, 431
BslFI	GGGAC	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	5, 307
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	5 cut(s)	12, 223, 421, 511, 657
BspANI	GGCC	2 cut(s)	5, 307
BspCNI	CTCAG	1 cut(s)	72
BspEI	TCCGGA	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	98
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	308, 414
BssMI	GATC	5 cut(s)	12, 223, 421, 511, 657
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	274, 352
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	4 cut(s)	54, 487, 504, 567
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	267, 499
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	2 cut(s)	343, 502
BstKTI	GATC	5 cut(s)	15, 226, 424, 514, 660
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	5 cut(s)	12, 223, 421, 511, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 503
BstNI	CCWGG	1 cut(s)	204
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	93, 202
BstV1I	GCAGC	3 cut(s)	145, 464, 484
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	5, 307
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	267, 499
BtsIMutI	CAGTG	2 cut(s)	279, 357
Cac8I	GCNNGC	4 cut(s)	54, 487, 504, 567
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	2 cut(s)	343, 502
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	1 cut(s)	145
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	5 cut(s)	14, 225, 423, 513, 659
DpnII	GATC	5 cut(s)	12, 223, 421, 511, 657
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	2 cut(s)	3, 305
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	148
FaiI	YATR	4 cut(s)	146, 250, 281, 555
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	134, 453, 498
FokI	GGATG	2 cut(s)	274, 506
Fsp4HI	GCNGC	3 cut(s)	134, 453, 498
FspBI	CTAG	3 cut(s)	42, 72, 503
GlaI	GCGC	2 cut(s)	342, 501
GluI	GCNGC	3 cut(s)	134, 453, 498
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	5, 307
HapII	CCGG	4 cut(s)	94, 166, 231, 431
HhaI	GCGC	2 cut(s)	343, 502
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	341, 500
HinP1I	GCGC	2 cut(s)	341, 500
HpaII	CCGG	4 cut(s)	94, 166, 231, 431
Hpy188I	TCNGA	7 cut(s)	17, 81, 116, 123, 223, 576, 609
Hpy188III	TCNNGA	4 cut(s)	42, 145, 431, 520
HpyAV	CCTTC	7 cut(s)	142, 228, 237, 373, 394, 428, 517
HpyCH4III	ACNGT	2 cut(s)	274, 352
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	36, 52, 133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 503
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	2 cut(s)	341, 500
Kpn2I	TCCGGA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	12, 223, 421, 511, 657
Lsp1109I	GCAGC	3 cut(s)	145, 464, 484
LweI	GCATC	3 cut(s)	252, 484, 616
MaeI	CTAG	3 cut(s)	42, 72, 503
MaeII	ACGT	1 cut(s)	180
MalI	GATC	5 cut(s)	14, 225, 423, 513, 659
MboI	GATC	5 cut(s)	12, 223, 421, 511, 657
MboII	GAAGA	5 cut(s)	206, 304, 368, 419, 599
MlsI	TGGCCA	2 cut(s)	5, 307
MluCI	AATT	2 cut(s)	317, 459
MluNI	TGGCCA	2 cut(s)	5, 307
MnlI	CCTC	4 cut(s)	117, 222, 523, 538
Mox20I	TGGCCA	2 cut(s)	5, 307
MroI	TCCGGA	1 cut(s)	430
MscI	TGGCCA	2 cut(s)	5, 307
MseI	TTAA	3 cut(s)	65, 639, 678
Msp20I	TGGCCA	2 cut(s)	5, 307
MspI	CCGG	4 cut(s)	94, 166, 231, 431
MspR9I	CCNGG	2 cut(s)	95, 204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	482, 503
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	5 cut(s)	12, 223, 421, 511, 657
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	98
PagI	TCATGA	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PkrI	GCNGC	3 cut(s)	135, 454, 499
PshAI	GACNNNNGTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	65, 639, 678
SatI	GCNGC	3 cut(s)	134, 453, 498
Sau3AI	GATC	5 cut(s)	12, 223, 421, 511, 657
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	95, 204
SfaNI	GCATC	3 cut(s)	252, 484, 616
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	317, 459
SspMI	CTAG	3 cut(s)	42, 72, 503
StyD4I	CCNGG	2 cut(s)	93, 202
TaaI	ACNGT	2 cut(s)	274, 352
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	4 cut(s)	11, 153, 519, 537
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	317, 459
Tru1I	TTAA	3 cut(s)	65, 639, 678
Tru9I	TTAA	3 cut(s)	65, 639, 678
TscAI	CASTG	2 cut(s)	279, 357
TseI	GCWGC	3 cut(s)	133, 452, 497
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	2 cut(s)	279, 357
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	41
XspI	CTAG	3 cut(s)	42, 72, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.