Rorug07G0310900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005641
Physical Location & Seq
Reverse (-)
31147400 .. 31149487
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0310900.1

Sequence Viewer

Length: 528 bp
ATGGCTGGGACATCTAACAATGCTGCTTCTTCACTGTCCATGGCCTTTTTATACGTAGTGGCATGGACGATTGAGGGTAATCTCCTTCAGGAAATATTGTCATGGACTGATATTGGTATTGCCATTCTTCCGGGAGTAATCAGCCTCCTTGCTGGCCTCTTGATGTGGGTTACATCTATGCCTCCAGTGAGAAAGCTGAATTTTGAGTTATTCTTCTACACTCATCAGTTATATGTCATTTTTGTCGTCTTTTTGGCTTTGCACGTCGGTGATTTCCTTTTTGCATTTGCTGCTGGAGGCATATTTATTTTTCTTCTGGATCGTTTTCTAAGATTCTGTCAATCACGAAGGGTTGTTGATATAATTTCAGCAAAGTGCCTTCCATGTGGAACTGTAGAACTGGTTGTCGCCAAACCTGAAAATCTGCGGTACAATGCCCTCAGTTTTGTTTTTCTTCAAGTTCGGGAGCTATCATCGCTGCAGTACGTGGCATCCTTTCAGTGTGTCATCCAGTCCTATGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.63

Weight (kDa)

6.7

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferric_reduct PF01794 15 - 85 1.1e-10 Ferric reductase like transmembrane component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 431, 485
AfiI CCNNNNNNNGG 1 cut(s) 522
AgsI TTSAA 1 cut(s) 458
AjiI CACGTC 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 2 cut(s) 196, 469
AluI AGCT 2 cut(s) 196, 469
AlwI GGATC 1 cut(s) 327
AoxI GGCC 2 cut(s) 42, 154
ApeKI GCWGC 3 cut(s) 23, 290, 478
ApoI RAATTY 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 281
BbvI GCAGC 3 cut(s) 10, 277, 465
BccI CCATC 1 cut(s) 516
BcnI CCSGG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 393, 479
BisI GCNGC 3 cut(s) 24, 291, 479
BlsI GCNGC 3 cut(s) 25, 292, 480
Bme1390I CCNGG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 500
BpmI CTGGAG 2 cut(s) 168, 315
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 2 cut(s) 55, 487
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 522
Bse1I ACTGG 3 cut(s) 185, 405, 511
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 3 cut(s) 491, 507, 527
BseLI CCNNNNNNNGG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 3 cut(s) 185, 405, 511
BseXI GCAGC 3 cut(s) 10, 277, 465
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 2 cut(s) 44, 156
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 2 cut(s) 44, 156
Bsp143I GATC 1 cut(s) 319
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 1 cut(s) 427
BspANI GGCC 2 cut(s) 44, 156
BspCNI CTCAG 1 cut(s) 453
BspMAI CTGCAG 1 cut(s) 483
BspPI GGATC 1 cut(s) 327
BsrI ACTGG 3 cut(s) 185, 405, 511
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 36, 394
BstAPI GCANNNNNTGC 1 cut(s) 290
BstBAI YACGTR 2 cut(s) 55, 487
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 329, 440
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 3 cut(s) 491, 507, 527
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 290, 475
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 393, 479
BstSNI TACGTA 1 cut(s) 55
BstV1I GCAGC 3 cut(s) 10, 277, 465
BstXI CCANNNNNNTGG 1 cut(s) 518
BsuRI GGCC 2 cut(s) 44, 156
BtgI CCRYGG 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 491, 507, 527
BtsIMutI CAGTG 3 cut(s) 32, 192, 506
Cac8I GCNNGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 430, 484
CviAII CATG 4 cut(s) 40, 63, 102, 384
CviJI RGCY 7 cut(s) 5, 44, 144, 156, 196, 257, 469
CviKI_1 RGCY 7 cut(s) 5, 44, 144, 156, 196, 257, 469
CviQI GTAC 2 cut(s) 430, 484
DdeI CTNAG 2 cut(s) 329, 440
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eco105I TACGTA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 4 cut(s) 43, 66, 105, 387
FaqI GGGAC 1 cut(s) 22
FatI CATG 4 cut(s) 39, 62, 101, 383
Fnu4HI GCNGC 3 cut(s) 24, 291, 479
FokI GGATG 2 cut(s) 478, 494
Fsp4HI GCNGC 3 cut(s) 24, 291, 479
GluI GCNGC 3 cut(s) 24, 291, 479
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 2 cut(s) 168, 315
HaeIII GGCC 2 cut(s) 44, 156
HapII CCGG 1 cut(s) 131
Hin1II CATG 4 cut(s) 43, 66, 105, 387
HinfI GANTC 1 cut(s) 333
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 281
Hpy188III TCNNGA 5 cut(s) 89, 160, 317, 345, 464
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 95, 342, 389
HpyCH4III ACNGT 2 cut(s) 36, 394
HpyCH4IV ACGT 3 cut(s) 54, 264, 486
HpyCH4V TGCA 3 cut(s) 262, 284, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 475
HpyF3I CTNAG 2 cut(s) 329, 440
HpySE526I ACGT 3 cut(s) 54, 264, 486
Hsp92II CATG 4 cut(s) 43, 66, 105, 387
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 9 cut(s) 74, 138, 144, 198, 279, 302, 386, 429, 524
Lsp1109I GCAGC 3 cut(s) 10, 277, 465
LweI GCATC 1 cut(s) 500
MaeII ACGT 3 cut(s) 54, 264, 486
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 5 cut(s) 21, 119, 205, 305, 446
MluCI AATT 2 cut(s) 199, 363
MnlI CCTC 6 cut(s) 67, 155, 167, 192, 290, 449
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 290, 475
NciI CCSGG 1 cut(s) 132
NcoI CCATGG 1 cut(s) 39
NdeII GATC 1 cut(s) 319
NlaIII CATG 4 cut(s) 43, 66, 105, 387
OliI CACNNNNGTG 1 cut(s) 267
PfeI GAWTC 1 cut(s) 333
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 3 cut(s) 25, 292, 480
Ppu21I YACGTR 2 cut(s) 55, 487
PspFI CCCAGC 1 cut(s) 5
PstI CTGCAG 1 cut(s) 483
RsaI GTAC 2 cut(s) 431, 485
RsaNI GTAC 2 cut(s) 430, 484
RseI CAYNNNNRTG 1 cut(s) 267
SatI GCNGC 3 cut(s) 24, 291, 479
Sau3AI GATC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 132
SetI ASST 6 cut(s) 57, 198, 267, 418, 471, 489
SfaNI GCATC 1 cut(s) 500
SfcI CTRYAG 2 cut(s) 393, 479
SmiMI CAYNNNNRTG 1 cut(s) 267
SnaBI TACGTA 1 cut(s) 55
Sse9I AATT 2 cut(s) 199, 363
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 36, 394
TaiI ACGT 3 cut(s) 57, 267, 489
TasI AATT 2 cut(s) 199, 363
TfiI GAWTC 1 cut(s) 333
TscAI CASTG 3 cut(s) 39, 192, 506
TseI GCWGC 3 cut(s) 23, 290, 478
TspRI CASTG 3 cut(s) 39, 192, 506
XapI RAATTY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.