Rh7CG484500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005641
Physical Location & Seq
Forward (+)
65209263 .. 65211357
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG484500.1

Sequence Viewer

Length: 465 bp
ATGTCGTTTTCTCGGAAACCAGAGCTTGCGATCATGCAATACGAGCCTTCAATTCAGAGAGTTCAGATTGGCAGCAAGATCCTGCTAATGGTGGTCAACAGCGTTGACCCCGGCACCCCTCCTCTTCCTTCCGATCCTTCCGGTGGTTCTTGGAAAATGTGGCTTTTGGGTGTACTTTTCTCACTAATTATACCCTTTACGAAGAACAAATGGTACCCATTACTCACGTTGAAAGACCGAGTGGAGACGGCGATGGATGCCGCAGAAGAAGTGGCGGAGCTCGTGGAGAAGGTGTCGGAGAAAGTGGAGGAGGTCGCGGATGATATCGGCAATCATCTTCCCGAAGGTAAACTTCGACATGCGGCCGTGCTTGTGGAGGAATTAGCTGACAAAACAGGCAAGGCTGCGGCCATGGCGGATGATATCATTGAGAAGGTGACAATTTTTCTAACTAATCTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

4.86

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 2 cut(s) 113, 213
AccII CGCG 1 cut(s) 317
AciI CCGC 6 cut(s) 261, 275, 317, 362, 407, 416
AclWI GGATC 2 cut(s) 73, 128
AcoI YGGCCR 2 cut(s) 363, 408
AfaI GTAC 2 cut(s) 174, 215
AfiI CCNNNNNNNGG 2 cut(s) 88, 143
AgsI TTSAA 2 cut(s) 51, 232
AluBI AGCT 3 cut(s) 25, 280, 386
AluI AGCT 3 cut(s) 25, 280, 386
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 73, 128
AoxI GGCC 2 cut(s) 363, 408
ApeKI GCWGC 2 cut(s) 72, 404
Asp718I GGTACC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 448
BanI GGYRCC 2 cut(s) 113, 213
BanII GRGCYC 1 cut(s) 282
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 84, 391
BccI CCATC 1 cut(s) 247
BceAI ACGGC 2 cut(s) 264, 350
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 239
BisI GCNGC 5 cut(s) 73, 261, 363, 405, 408
BlsI GCNGC 5 cut(s) 74, 262, 364, 406, 409
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 115, 215
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 109, 411
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 143
BseDI CCNNGG 2 cut(s) 109, 411
BseGI GGATG 3 cut(s) 262, 325, 424
BseLI CCNNNNNNNGG 2 cut(s) 88, 143
BseRI GAGGAG 2 cut(s) 111, 323
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 84, 391
Bsh1236I CGCG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 2 cut(s) 365, 410
BshNI GGYRCC 2 cut(s) 113, 213
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 111, 141
BslI CCNNNNNNNGG 2 cut(s) 88, 143
BsmAI GTCTC 1 cut(s) 239
BsmBI CGTCTC 1 cut(s) 239
BsnI GGCC 2 cut(s) 365, 410
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 30, 78, 133
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 6 cut(s) 261, 275, 317, 362, 407, 416
BspANI GGCC 2 cut(s) 365, 410
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 115, 215
BspPI GGATC 2 cut(s) 73, 128
BspT107I GGYRCC 2 cut(s) 113, 213
BssECI CCNNGG 2 cut(s) 109, 411
BssMI GATC 3 cut(s) 30, 78, 133
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 3 cut(s) 262, 325, 424
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 3 cut(s) 33, 81, 136
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 30, 78, 133
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 3 cut(s) 43, 257, 413
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 84, 391
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BstZI CGGCCG 1 cut(s) 363
BsuRI GGCC 2 cut(s) 365, 410
BtgI CCRYGG 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 3 cut(s) 262, 325, 424
Cac8I GCNNGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 173, 214
CviAII CATG 3 cut(s) 34, 359, 412
CviJI RGCY 8 cut(s) 25, 46, 163, 280, 365, 386, 404, 410
CviKI_1 RGCY 8 cut(s) 25, 46, 163, 280, 365, 386, 404, 410
CviQI GTAC 2 cut(s) 173, 214
DpnI GATC 3 cut(s) 32, 80, 135
DpnII GATC 3 cut(s) 30, 78, 133
EaeI YGGCCR 2 cut(s) 363, 408
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 2 cut(s) 290, 431
Ecl136II GAGCTC 1 cut(s) 280
EclXI CGGCCG 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 282
Eco32I GATATC 2 cut(s) 325, 424
Eco52I CGGCCG 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoRV GATATC 2 cut(s) 325, 424
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 3 cut(s) 37, 362, 415
FaiI YATR 4 cut(s) 35, 191, 360, 413
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 3 cut(s) 33, 358, 411
Fnu4HI GCNGC 5 cut(s) 73, 261, 363, 405, 408
FokI GGATG 3 cut(s) 269, 332, 431
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 5 cut(s) 73, 261, 363, 405, 408
GluI GCNGC 5 cut(s) 73, 261, 363, 405, 408
HaeIII GGCC 2 cut(s) 365, 410
HapII CCGG 2 cut(s) 111, 141
Hin1II CATG 3 cut(s) 37, 362, 415
HincII GTYRAC 2 cut(s) 97, 106
HindII GTYRAC 2 cut(s) 97, 106
HpaII CCGG 2 cut(s) 111, 141
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 4 cut(s) 97, 106, 173, 350
Hpy188I TCNGA 5 cut(s) 15, 57, 66, 133, 298
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 4 cut(s) 97, 106, 173, 350
HpyAV CCTTC 6 cut(s) 57, 138, 147, 283, 338, 427
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 257, 413
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 3 cut(s) 37, 362, 415
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 30, 78, 133
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 5 cut(s) 33, 95, 124, 154, 381
Lsp1109I GCAGC 2 cut(s) 84, 391
LweI GCATC 1 cut(s) 247
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 436
MalI GATC 3 cut(s) 32, 80, 135
MboI GATC 3 cut(s) 30, 78, 133
MboII GAAGA 4 cut(s) 116, 214, 278, 329
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 4 cut(s) 51, 186, 380, 441
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 5 cut(s) 129, 132, 301, 304, 370
MspI CCGG 2 cut(s) 111, 141
MspR9I CCNGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 43, 257, 413
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 411
NdeII GATC 3 cut(s) 30, 78, 133
NlaIII CATG 3 cut(s) 37, 362, 415
NlaIV GGNNCC 2 cut(s) 115, 215
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 362
PkrI GCNGC 5 cut(s) 74, 262, 364, 406, 409
Psp124BI GAGCTC 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 115, 215
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 2 cut(s) 174, 215
RsaNI GTAC 2 cut(s) 173, 214
SacI GAGCTC 1 cut(s) 282
SatI GCNGC 5 cut(s) 73, 261, 363, 405, 408
Sau3AI GATC 3 cut(s) 30, 78, 133
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 282
SetI ASST 9 cut(s) 27, 230, 282, 294, 315, 349, 388, 438, 464
SfaNI GCATC 1 cut(s) 247
Sse9I AATT 4 cut(s) 51, 186, 380, 441
SsiI CCGC 6 cut(s) 261, 275, 317, 362, 407, 416
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 411
TaiI ACGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 355
TaqII GACCGA 1 cut(s) 252
TasI AATT 4 cut(s) 51, 186, 380, 441
TatI WGTACW 1 cut(s) 172
TauI GCSGC 3 cut(s) 263, 365, 410
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 2 cut(s) 72, 404
Tsp45I GTSAC 1 cut(s) 436
XceI RCATGY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.