Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Reverse (-)

42972318 .. 42974859

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G524300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCCATGTTGATTAGAAACACAATAATCATAACAACAGCAGTTGCTCCTTGCAGCAGCTCTAGGCATCTGCAGGTTTCAAGTTTTGGTCCTAGTTGTCTCCGTACAAATCGCAGGGACAGATGCCATTTTCTTGGAAACAGAAACTTCTTGCAGTCCATTTTGAAGGTCCAAAATGGCACCAAGATAAAGATGGATGTGGTTGTCAATGGTGCTGAACCAGGAACTCCTCTGCCTTCTGATCCTTCTTCTGGGACTTCTTGGAAATTATGGCTTGTGGGGATACTTATCTCAGTAGTTGTACCCTTTTGGAAGAACAAATGGTGGCCATTGCAAAAGTTCAGAGAACAAATCGAAACGACGCTGGATTCAGTAGAAGATGTGGCAGAATTGGTGGAGAAGGTGGCCGGGGAAGTGGAGAAGGTAGCCGACGACATTGCTGATCATCTTCCTCAGGGAGATCTTCAAAAGGCAGCAAGGTTTGTTGAGAATGTGGCAAGAGAAGCAGCCAAGGATGCGTCGCTAGCTGATGATCTCATTGAGAAGGTTGAGGATGTAGAAAAGGAGGTGGATTCTATCATTGATCAGGCCAATGAGAAAATCAAAACATCTGACGATACTGAAAAGGAGACAGCAAAAATCAAAGACGCCACTGATATCAAAAATAAGATAACAGAGATCAAAGAAGCAAATAATATAAAAAAAGGAGACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.48

Weight (kDa)

5.29

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	3 cut(s)	3, 326, 405
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	2 cut(s)	106, 303
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	81, 166, 467
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	60, 527
AluI	AGCT	2 cut(s)	60, 527
Alw26I	GTCTC	3 cut(s)	104, 623, 702
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	4 cut(s)	3, 326, 405, 588
ApeKI	GCWGC	4 cut(s)	54, 57, 473, 506
AspS9I	GGNCC	2 cut(s)	89, 169
AsuC2I	CCSGG	1 cut(s)	409
AsuNHI	GCTAGC	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	89, 169
AxyI	CCTNAGG	1 cut(s)	453
BalI	TGGCCA	2 cut(s)	5, 328
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	4 cut(s)	66, 69, 485, 518
BccI	CCATC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	2 cut(s)	442, 583
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	3 cut(s)	104, 623, 702
BfaI	CTAG	3 cut(s)	63, 93, 524
BfmI	CTRYAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	4 cut(s)	55, 58, 474, 507
BlsI	GCNGC	4 cut(s)	56, 59, 475, 508
Bme1390I	CCNGG	2 cut(s)	222, 409
Bme18I	GGWCC	2 cut(s)	89, 169
BmgT120I	GGNCC	2 cut(s)	89, 169
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	222, 409
BmsI	GCATC	3 cut(s)	76, 113, 505
BmtI	GCTAGC	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	408, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse21I	CCTNAGG	1 cut(s)	453
Bse3DI	GCAATG	2 cut(s)	329, 435
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	408, 510
BseGI	GGATG	3 cut(s)	202, 520, 559
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	2 cut(s)	329, 435
BseMII	CTCAG	2 cut(s)	306, 467
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	4 cut(s)	66, 69, 485, 518
BshFI	GGCC	4 cut(s)	5, 328, 407, 590
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	2 cut(s)	131, 268
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	3 cut(s)	104, 623, 702
BsmFI	GGGAC	2 cut(s)	131, 268
BsnI	GGCC	4 cut(s)	5, 328, 407, 590
Bsp143I	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
BspANI	GGCC	4 cut(s)	5, 328, 407, 590
BspCNI	CTCAG	2 cut(s)	305, 466
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	64
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	329, 435
BssECI	CCNNGG	2 cut(s)	408, 510
BssMI	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
BssNI	GRCGYC	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	292, 453
BstF5I	GGATG	3 cut(s)	202, 520, 559
BstKTI	GATC	6 cut(s)	244, 445, 463, 535, 586, 681
BstMAI	GTCTC	3 cut(s)	104, 623, 702
BstMBI	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	503, 515, 524
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	220, 407
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	66, 69, 485, 518
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	4 cut(s)	5, 328, 407, 590
BtsCI	GGATG	3 cut(s)	202, 520, 559
BtsIMutI	CAGTG	1 cut(s)	651
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	525
Cfr13I	GGNCC	2 cut(s)	89, 169
CseI	GACGC	3 cut(s)	370, 507, 656
Csp6I	GTAC	2 cut(s)	105, 302
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	9 cut(s)	5, 60, 274, 328, 407, 428, 509, 527, 590
CviKI_1	RGCY	9 cut(s)	5, 60, 274, 328, 407, 428, 509, 527, 590
CviQI	GTAC	2 cut(s)	105, 302
DdeI	CTNAG	2 cut(s)	292, 453
DpnI	GATC	6 cut(s)	243, 444, 462, 534, 585, 680
DpnII	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
EaeI	YGGCCR	3 cut(s)	3, 326, 405
Eco130I	CCWWGG	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	2 cut(s)	89, 169
Eco81I	CCTNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	1 cut(s)	10
FaiI	YATR	4 cut(s)	8, 32, 271, 698
FaqI	GGGAC	2 cut(s)	131, 268
FatI	CATG	1 cut(s)	6
FbaI	TGATCA	2 cut(s)	442, 583
Fnu4HI	GCNGC	4 cut(s)	55, 58, 474, 507
FokI	GGATG	3 cut(s)	209, 527, 566
Fsp4HI	GCNGC	4 cut(s)	55, 58, 474, 507
FspBI	CTAG	3 cut(s)	63, 93, 524
GluI	GCNGC	4 cut(s)	55, 58, 474, 507
HaeIII	GGCC	4 cut(s)	5, 328, 407, 590
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	3 cut(s)	370, 507, 656
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	1 cut(s)	10
HinfI	GANTC	2 cut(s)	368, 572
HpaII	CCGG	1 cut(s)	408
Hpy188I	TCNGA	3 cut(s)	241, 344, 613
Hpy99I	CGWCG	3 cut(s)	364, 434, 523
HpyAV	CCTTC	6 cut(s)	160, 246, 255, 394, 415, 538
HpyCH4V	TGCA	4 cut(s)	54, 73, 154, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	503, 515, 524
HpyF3I	CTNAG	2 cut(s)	292, 453
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	1 cut(s)	10
Ksp22I	TGATCA	2 cut(s)	442, 583
Kzo9I	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	59, 100, 207, 234, 237, 350, 421, 440, 572
Lsp1109I	GCAGC	4 cut(s)	66, 69, 485, 518
LweI	GCATC	3 cut(s)	76, 113, 505
MaeI	CTAG	3 cut(s)	63, 93, 524
MalI	GATC	6 cut(s)	243, 444, 462, 534, 585, 680
MboI	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
MboII	GAAGA	5 cut(s)	240, 325, 389, 440, 455
MflI	RGATCY	1 cut(s)	460
MlsI	TGGCCA	2 cut(s)	5, 328
MluCI	AATT	3 cut(s)	266, 389, 712
MluNI	TGGCCA	2 cut(s)	5, 328
MnlI	CCTC	4 cut(s)	240, 462, 544, 559
Mox20I	TGGCCA	2 cut(s)	5, 328
MscI	TGGCCA	2 cut(s)	5, 328
MseI	TTAA	1 cut(s)	715
Msp20I	TGGCCA	2 cut(s)	5, 328
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	222, 409
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	503, 515, 524
NciI	CCSGG	1 cut(s)	409
NdeII	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	368, 572
PkrI	GCNGC	4 cut(s)	56, 59, 475, 508
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	89, 169
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	106, 303
RsaNI	GTAC	2 cut(s)	105, 302
SaqAI	TTAA	1 cut(s)	715
SatI	GCNGC	4 cut(s)	55, 58, 474, 507
Sau3AI	GATC	6 cut(s)	241, 442, 460, 532, 583, 678
Sau96I	GGNCC	2 cut(s)	89, 169
ScrFI	CCNGG	2 cut(s)	222, 409
SetI	ASST	9 cut(s)	62, 78, 171, 405, 426, 482, 529, 549, 570
SfaNI	GCATC	3 cut(s)	76, 113, 505
SfcI	CTRYAG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	89, 169
Sse9I	AATT	3 cut(s)	266, 389, 712
SspMI	CTAG	3 cut(s)	63, 93, 524
StyD4I	CCNGG	2 cut(s)	220, 407
StyI	CCWWGG	1 cut(s)	510
TaqI	TCGA	1 cut(s)	354
TasI	AATT	3 cut(s)	266, 389, 712
TfiI	GAWTC	2 cut(s)	368, 572
Tru1I	TTAA	1 cut(s)	715
Tru9I	TTAA	1 cut(s)	715
TscAI	CASTG	1 cut(s)	658
TseI	GCWGC	4 cut(s)	54, 57, 473, 506
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	2 cut(s)	89, 169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	3 cut(s)	63, 93, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.