Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Forward (+)

59103424 .. 59104905

Gene Structure 1482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCATGTCCATCAGAATAATCACAACAACAACAGCTCTTACTCCCAGCAATTCTAGATCATCACTACTTCATCGCCACCTCAGATTAAACCAGAGGGATTCATGTCGTTTTCTCGGAAACCAGAGCTTCAAGATCCTGCTAATGGTGGTCAACAGCGTTGACCCCGGCACCCCTCCTCTTCCTTCCGATCCTTCCGGTGGTTCTTGGAAAATGTGGCTTTTGGGTGTACTTTTCTCACTAATTATACCCTTTACGAAGAACAAATGGTACCCATTACTCACGTTGAAAGACCGAGTGGAGACGGCGATGGATGCCGCAGAAGAAGTGGCGGAGCTCGTGGAGAAGGTGTCCGAGAAAGTTGAGGAGGTCGCGGATGATATCGGCAATCATCTTCCCGAAGGTAAACTTCGACATGCTGCCATGCTTGTGGAGGAATTAGCTGACAAAACTGGCAAGGCTGCGGCCATGGCGGATGATATCATTGAGAAGGTTGAGGAAGTGGAGAAAGAGGTAGACTCCATCATTGACAAGGCCAATGAGAAAAAGAAAGAAGACAAAATCAAAGAAGCGAGTACCAAGCAAGATAATAGTATTGAAAATGAGACAATTGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.92

Weight (kDa)

5.15

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	2 cut(s)	170, 270
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	374
AciI	CCGC	5 cut(s)	318, 332, 374, 464, 473
AclWI	GGATC	2 cut(s)	130, 185
AcoI	YGGCCR	2 cut(s)	3, 465
AfaI	GTAC	3 cut(s)	231, 272, 577
AfiI	CCNNNNNNNGG	2 cut(s)	145, 200
AgsI	TTSAA	3 cut(s)	133, 289, 599
AluBI	AGCT	4 cut(s)	38, 129, 337, 443
AluI	AGCT	4 cut(s)	38, 129, 337, 443
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	2 cut(s)	296, 599
AlwI	GGATC	2 cut(s)	130, 185
AoxI	GGCC	3 cut(s)	3, 465, 534
ApeKI	GCWGC	2 cut(s)	419, 461
Asp718I	GGTACC	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	170, 270
BanII	GRGCYC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	406, 448
BccI	CCATC	3 cut(s)	20, 304, 530
BceAI	ACGGC	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	296, 599
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	4 cut(s)	318, 420, 462, 465
BlsI	GCNGC	4 cut(s)	319, 421, 463, 466
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	172, 272
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	166, 468
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 200
Bse1I	ACTGG	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	166, 468
BseGI	GGATG	3 cut(s)	319, 382, 481
BseLI	CCNNNNNNNGG	2 cut(s)	145, 200
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	2 cut(s)	168, 380
BseXI	GCAGC	2 cut(s)	406, 448
BseYI	CCCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	3 cut(s)	5, 467, 536
BshNI	GGYRCC	2 cut(s)	170, 270
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	168, 198
BslI	CCNNNNNNNGG	2 cut(s)	145, 200
BsmAI	GTCTC	2 cut(s)	296, 599
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	5, 467, 536
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	59, 135, 190
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	5 cut(s)	318, 332, 374, 464, 473
BspANI	GGCC	3 cut(s)	5, 467, 536
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	172, 272
BspPI	GGATC	2 cut(s)	130, 185
BspT107I	GGYRCC	2 cut(s)	170, 270
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	166, 468
BssMI	GATC	3 cut(s)	59, 135, 190
BssSI	CACGAG	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	319, 382, 481
BstFNI	CGCG	1 cut(s)	374
BstKTI	GATC	3 cut(s)	62, 138, 193
BstMAI	GTCTC	2 cut(s)	296, 599
BstMBI	GATC	3 cut(s)	59, 135, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 470
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	406, 448
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	135
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	5, 467, 536
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	2 cut(s)	59, 323
BtsCI	GGATG	3 cut(s)	319, 382, 481
Csp6I	GTAC	3 cut(s)	230, 271, 576
CviAII	CATG	5 cut(s)	7, 105, 416, 424, 469
CviJI	RGCY	9 cut(s)	5, 38, 129, 220, 337, 443, 461, 467, 536
CviKI_1	RGCY	9 cut(s)	5, 38, 129, 220, 337, 443, 461, 467, 536
CviQI	GTAC	3 cut(s)	230, 271, 576
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	3 cut(s)	61, 137, 192
DpnII	GATC	3 cut(s)	59, 135, 190
EaeI	YGGCCR	2 cut(s)	3, 465
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	2 cut(s)	347, 488
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	339
Eco32I	GATATC	2 cut(s)	382, 481
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoRV	GATATC	2 cut(s)	382, 481
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	5 cut(s)	10, 108, 419, 427, 472
FaiI	YATR	6 cut(s)	8, 106, 248, 417, 425, 470
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	5 cut(s)	6, 104, 415, 423, 468
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	4 cut(s)	318, 420, 462, 465
FokI	GGATG	3 cut(s)	326, 389, 488
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	318, 420, 462, 465
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	4 cut(s)	318, 420, 462, 465
GsaI	CCCAGC	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	5, 467, 536
HapII	CCGG	2 cut(s)	168, 198
Hin1II	CATG	5 cut(s)	10, 108, 419, 427, 472
HincII	GTYRAC	2 cut(s)	154, 163
HindII	GTYRAC	2 cut(s)	154, 163
HinfI	GANTC	2 cut(s)	101, 518
HpaII	CCGG	2 cut(s)	168, 198
Hpy166II	GTNNAC	5 cut(s)	154, 163, 230, 407, 517
Hpy188I	TCNGA	5 cut(s)	17, 86, 119, 190, 355
Hpy188III	TCNNGA	3 cut(s)	57, 133, 398
Hpy8I	GTNNAC	5 cut(s)	154, 163, 230, 407, 517
HpyAV	CCTTC	5 cut(s)	195, 204, 340, 395, 484
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 470
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	5 cut(s)	10, 108, 419, 427, 472
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	59, 135, 190
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	7 cut(s)	61, 107, 137, 152, 181, 211, 438
Lsp1109I	GCAGC	2 cut(s)	406, 448
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	284
MalI	GATC	3 cut(s)	61, 137, 192
MboI	GATC	3 cut(s)	59, 135, 190
MboII	GAAGA	5 cut(s)	173, 271, 335, 386, 566
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	52, 243, 437, 609
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	9 cut(s)	90, 92, 186, 189, 358, 361, 427, 490, 505
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	168, 198
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	314, 470
NciI	CCSGG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	3 cut(s)	59, 135, 190
NlaIII	CATG	5 cut(s)	10, 108, 419, 427, 472
NlaIV	GGNNCC	2 cut(s)	172, 272
NspI	RCATGY	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	319, 421, 463, 466
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	172, 272
PsrI	GAACNNNNNNTAC	2 cut(s)	254, 286
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	3 cut(s)	231, 272, 577
RsaNI	GTAC	3 cut(s)	230, 271, 576
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	4 cut(s)	318, 420, 462, 465
Sau3AI	GATC	3 cut(s)	59, 135, 190
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	52, 243, 437, 609
SsiI	CCGC	5 cut(s)	318, 332, 374, 464, 473
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	468
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	412
TaqII	GACCGA	1 cut(s)	309
TasI	AATT	4 cut(s)	52, 243, 437, 609
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	2 cut(s)	320, 467
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	2 cut(s)	419, 461
TspDTI	ATGAA	2 cut(s)	62, 93
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.