Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Forward (+)

63595645 .. 63597430

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCCATGTCCATCAGAACAATCACAACAACAACAGCTCTTACTCTCAGCAATTCTAGATCATCACAACTTCATCACCACCTCAGATTAAACCAGAGAGATTCATGTCGTTTTCTCGGAAACCGGAGCTTGCCATCGTGCAATACGAGCCTTCAGAGAGTTCAGATTGGCAGCAAGATCCTGCTAATGGTGGTCAACAGCGTTGACCCCGGCACCCCTCCTCTTCCTTCTGAACCTTCTGGTGGTTCTTGGAAAATGTGGCTTTTAGGTGTACTTTTCTCAGTAATTATTCCCTTAACGAAGAACAAATGGTACCCATTACTCAAGTTGAAAGGCAAGCTATACTATATTCACAATGTTATTATTATTGACCGAGTGGAGACGGTGACGGATGCCGCAGAAGAAGTGGCAGAGCTCGTGGAAAAGGTGTCTGAGGAAGTAGAGGAGGTTGCGGACGATATCGGCAACCATCTTCCCGAAGGTAAACTTCGACATGCTGCCATGCGTGTGGAGGAATTAGCTGACAAAACAGGCAAGGCTGCGGCCATGGCGGATGATATTATTGAGAAGGTTGAGGAAGTGGAGAAAGAGGTAGACTCCATCACTGACAAGGCCAACGAGAAAAAGAAAGAAGACAAAATCAAAGAAGCGAGTACCGAGCAAGATAATAGTATTAAAAATGAGACGGTTGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.83

Weight (kDa)

5.49

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	2 cut(s)	212, 312
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	4 cut(s)	396, 452, 542, 551
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	2 cut(s)	3, 543
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	273, 314, 655
AfiI	CCNNNNNNNGG	2 cut(s)	187, 242
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	5 cut(s)	38, 129, 340, 415, 521
AluI	AGCT	5 cut(s)	38, 129, 340, 415, 521
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	374, 677
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	3, 543, 612
ApeKI	GCWGC	3 cut(s)	171, 497, 539
Asp718I	GGTACC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	68, 397
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	212, 312
BanII	GRGCYC	1 cut(s)	417
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	183, 484, 526
BccI	CCATC	4 cut(s)	20, 142, 477, 608
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	374, 677
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	5 cut(s)	172, 396, 498, 540, 543
BlsI	GCNGC	5 cut(s)	173, 397, 499, 541, 544
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	214, 314
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	208, 546
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 242
BseDI	CCNNGG	2 cut(s)	208, 546
BseGI	GGATG	2 cut(s)	397, 559
BseLI	CCNNNNNNNGG	2 cut(s)	187, 242
BseMII	CTCAG	4 cut(s)	61, 97, 294, 423
BseRI	GAGGAG	2 cut(s)	210, 458
BseXI	GCAGC	3 cut(s)	183, 484, 526
BshFI	GGCC	3 cut(s)	5, 545, 614
BshNI	GGYRCC	2 cut(s)	212, 312
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	124, 210
BslI	CCNNNNNNNGG	2 cut(s)	187, 242
BsmAI	GTCTC	2 cut(s)	374, 677
BsmBI	CGTCTC	2 cut(s)	374, 677
BsnI	GGCC	3 cut(s)	5, 545, 614
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	59, 177
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	4 cut(s)	396, 452, 542, 551
BspANI	GGCC	3 cut(s)	5, 545, 614
BspCNI	CTCAG	4 cut(s)	60, 96, 293, 424
BspLI	GGNNCC	2 cut(s)	214, 314
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	2 cut(s)	212, 312
BssECI	CCNNGG	2 cut(s)	208, 546
BssMI	GATC	2 cut(s)	59, 177
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	385, 688
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	131, 338
BstDEI	CTNAG	4 cut(s)	47, 83, 280, 432
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	397, 559
BstKTI	GATC	2 cut(s)	62, 180
BstMAI	GTCTC	2 cut(s)	374, 677
BstMBI	GATC	2 cut(s)	59, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 548
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	183, 484, 526
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	5, 545, 614
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	397, 559
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	131, 338
Csp6I	GTAC	3 cut(s)	272, 313, 654
CviAII	CATG	5 cut(s)	7, 105, 494, 502, 547
CviQI	GTAC	3 cut(s)	272, 313, 654
DdeI	CTNAG	4 cut(s)	47, 83, 280, 432
DpnI	GATC	2 cut(s)	61, 179
DpnII	GATC	2 cut(s)	59, 177
EaeI	YGGCCR	2 cut(s)	3, 543
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	566
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	546
Esp3I	CGTCTC	2 cut(s)	374, 677
FaeI	CATG	5 cut(s)	10, 108, 497, 505, 550
FaiI	YATR	7 cut(s)	8, 106, 343, 348, 495, 503, 548
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	5 cut(s)	6, 104, 493, 501, 546
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	5 cut(s)	172, 396, 498, 540, 543
FokI	GGATG	2 cut(s)	404, 566
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	5 cut(s)	172, 396, 498, 540, 543
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	5 cut(s)	172, 396, 498, 540, 543
HaeIII	GGCC	3 cut(s)	5, 545, 614
HapII	CCGG	2 cut(s)	124, 210
Hin1II	CATG	5 cut(s)	10, 108, 497, 505, 550
HincII	GTYRAC	2 cut(s)	196, 205
HindII	GTYRAC	2 cut(s)	196, 205
HinfI	GANTC	2 cut(s)	101, 596
HpaII	CCGG	2 cut(s)	124, 210
HphI	GGTGA	2 cut(s)	68, 397
Hpy166II	GTNNAC	5 cut(s)	196, 205, 272, 485, 595
Hpy188I	TCNGA	7 cut(s)	17, 86, 119, 156, 165, 232, 433
Hpy188III	TCNNGA	2 cut(s)	57, 476
Hpy8I	GTNNAC	5 cut(s)	196, 205, 272, 485, 595
HpyAV	CCTTC	5 cut(s)	161, 237, 246, 473, 562
HpyCH4III	ACNGT	2 cut(s)	385, 688
HpyCH4V	TGCA	2 cut(s)	141, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 548
HpyF3I	CTNAG	4 cut(s)	47, 83, 280, 432
Hsp92II	CATG	5 cut(s)	10, 108, 497, 505, 550
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	59, 177
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	6 cut(s)	107, 137, 194, 223, 225, 516
Lsp1109I	GCAGC	3 cut(s)	183, 484, 526
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	61, 179
MboI	GATC	2 cut(s)	59, 177
MboII	GAAGA	5 cut(s)	215, 313, 413, 464, 644
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	417
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	52, 285, 515
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	9 cut(s)	92, 228, 231, 427, 436, 439, 505, 568, 583
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	89, 296, 675
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	124, 210
MspR9I	CCNGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	147, 548
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	2 cut(s)	59, 177
NlaIII	CATG	5 cut(s)	10, 108, 497, 505, 550
NlaIV	GGNNCC	2 cut(s)	214, 314
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	5 cut(s)	173, 397, 499, 541, 544
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	214, 314
PsrI	GAACNNNNNNTAC	2 cut(s)	296, 328
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	273, 314, 655
RsaNI	GTAC	3 cut(s)	272, 313, 654
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	89, 296, 675
SatI	GCNGC	5 cut(s)	172, 396, 498, 540, 543
Sau3AI	GATC	2 cut(s)	59, 177
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	52, 285, 515
SsiI	CCGC	4 cut(s)	396, 452, 542, 551
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	385, 688
TaqI	TCGA	1 cut(s)	490
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	52, 285, 515
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	2 cut(s)	398, 545
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	89, 296, 675
Tru9I	TTAA	3 cut(s)	89, 296, 675
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	3 cut(s)	171, 497, 539
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	62, 93
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	610
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.