Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Reverse (-)

33309999 .. 33311928

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33830.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATGTGTATATCAAAAAGTCTTCAGCAACACTCCATCTCAACAAAACCATTTTTTTTCCGTCAATGGCCATGTCGATCAGAAGCTCAATTAGTCTTCCTTGCAGTTCTAGACGTTTGCAGGCTTCAGTTTTTAGACCTAGTTGTGTGAGTACTAATCACCGGGACAGATGTCGGTATCTCGGAAATTGGAGCTTCTTGCAGACCCTCGTGAAGATCCAAAATGGTAGCCAGAAAAAGATGGACGTGGTTGTCAATTGTGTGGAACCAGGAGCTCCTCTTCCTTCTGGTCCTTCCGGTACTAATTGGAAACTATGGCTTGTGGGGATGCTTTTCTCAGTAGTTATACCCTTTTGGAAGAACAAATGGTCGCCATTGCTAAAATTCAAAGAGACATTTTCAACGGCGCTGGATACAGTGGAAGATGTGGCAGAAATGGTAGAGAAGGTGGCCGGGGAAGTGGAGAAGGTGGCCGATGACATTGCCGATCATCTTCCAGAAGGAAAACTTCAAAGGGCAGCAAGGATTGTTGAGAGTGTGGCAAGAGAAGCAGCCAAGGGTGCTGCGCTAGCAGATGATCTCATTGAGCAGGTAATCTTTCTTTATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.61

Weight (kDa)

9.06

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	580
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	3 cut(s)	69, 450, 471
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	2 cut(s)	9, 111
AfaI	GTAC	2 cut(s)	154, 301
AgsI	TTSAA	3 cut(s)	388, 402, 512
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	3 cut(s)	87, 195, 275
AluI	AGCT	3 cut(s)	87, 195, 275
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	3 cut(s)	69, 450, 471
ApeKI	GCWGC	3 cut(s)	518, 551, 563
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	2 cut(s)	409, 568
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	2 cut(s)	164, 454
AsuHPI	GGTGA	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	15, 89
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	530, 550, 563
BccI	CCATC	2 cut(s)	45, 235
BceAI	ACGGC	1 cut(s)	420
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	164, 454
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	3 cut(s)	111, 141, 569
BfoI	RGCGCY	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	580
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	3 cut(s)	519, 552, 564
BlsI	GCNGC	3 cut(s)	520, 553, 565
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	3 cut(s)	164, 270, 454
Bme18I	GGWCC	1 cut(s)	290
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	3 cut(s)	164, 270, 454
BmsI	GCATC	1 cut(s)	318
BmtI	GCTAGC	1 cut(s)	572
BoxI	GACNNNNGTC	1 cut(s)	171
BpiI	GAAGAC	2 cut(s)	15, 89
BpuMI	CCSGG	2 cut(s)	164, 454
BsaJI	CCNNGG	2 cut(s)	453, 555
BsaWI	WCCGGW	1 cut(s)	296
Bse3DI	GCAATG	2 cut(s)	374, 480
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	453, 555
BseGI	GGATG	1 cut(s)	333
BseMI	GCAATG	2 cut(s)	374, 480
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	530, 550, 563
BshFI	GGCC	3 cut(s)	71, 452, 473
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	163, 297, 453
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	71, 452, 473
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	78, 216, 487, 577
BspANI	GGCC	3 cut(s)	71, 452, 473
BspCNI	CTCAG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	580
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	374, 480
BssECI	CCNNGG	2 cut(s)	453, 555
BssMI	GATC	4 cut(s)	78, 216, 487, 577
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	123, 570
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	409, 568
BstKTI	GATC	4 cut(s)	81, 219, 490, 580
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	4 cut(s)	78, 216, 487, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 560, 569
BstNI	CCWGG	1 cut(s)	270
BstPAI	GACNNNNGTC	1 cut(s)	171
BstSCI	CCNGG	3 cut(s)	162, 268, 452
BstV1I	GCAGC	3 cut(s)	530, 550, 563
BstV2I	GAAGAC	2 cut(s)	15, 89
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	71, 452, 473
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	123, 570
CfoI	GCGC	2 cut(s)	409, 568
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	153, 300
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	2 cut(s)	153, 300
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	4 cut(s)	80, 218, 489, 579
DpnII	GATC	4 cut(s)	78, 216, 487, 577
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	3 cut(s)	69, 450, 471
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	9, 111
EcoICRI	GAGCTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	1 cut(s)	76
FaiI	YATR	5 cut(s)	12, 74, 316, 347, 606
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	519, 552, 564
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	519, 552, 564
FspBI	CTAG	3 cut(s)	111, 141, 569
GlaI	GCGC	2 cut(s)	408, 567
GluI	GCNGC	3 cut(s)	519, 552, 564
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	71, 452, 473
HapII	CCGG	3 cut(s)	163, 297, 453
HhaI	GCGC	2 cut(s)	409, 568
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	407, 566
HinP1I	GCGC	2 cut(s)	407, 566
HpaII	CCGG	3 cut(s)	163, 297, 453
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	83, 185
Hpy188III	TCNNGA	3 cut(s)	111, 211, 497
HpyAV	CCTTC	5 cut(s)	294, 303, 439, 460, 494
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	115, 246
HpyCH4V	TGCA	3 cut(s)	105, 121, 202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 560, 569
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	2 cut(s)	115, 246
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	407, 566
Kzo9I	GATC	4 cut(s)	78, 216, 487, 577
LmnI	GCTCC	3 cut(s)	192, 272, 280
Lsp1109I	GCAGC	3 cut(s)	530, 550, 563
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	3 cut(s)	111, 141, 569
MaeII	ACGT	2 cut(s)	115, 246
MalI	GATC	4 cut(s)	80, 218, 489, 579
MboI	GATC	4 cut(s)	78, 216, 487, 577
MboII	GAAGA	7 cut(s)	15, 89, 226, 272, 370, 434, 485
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	277
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	5 cut(s)	90, 187, 256, 304, 383
MluNI	TGGCCA	1 cut(s)	71
MnlI	CCTC	2 cut(s)	218, 288
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	3 cut(s)	163, 297, 453
MspR9I	CCNGG	3 cut(s)	164, 270, 454
MunI	CAATTG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	548, 560, 569
NciI	CCSGG	2 cut(s)	164, 454
NdeII	GATC	4 cut(s)	78, 216, 487, 577
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	520, 553, 565
PshAI	GACNNNNGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	2 cut(s)	154, 301
RsaNI	GTAC	2 cut(s)	153, 300
SacI	GAGCTC	1 cut(s)	277
SatI	GCNGC	3 cut(s)	519, 552, 564
Sau3AI	GATC	4 cut(s)	78, 216, 487, 577
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	154
ScrFI	CCNGG	3 cut(s)	164, 270, 454
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	5 cut(s)	90, 187, 256, 304, 383
SspMI	CTAG	3 cut(s)	111, 141, 569
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	3 cut(s)	162, 268, 452
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	118, 249
TaqI	TCGA	1 cut(s)	77
TasI	AATT	5 cut(s)	90, 187, 256, 304, 383
TatI	WGTACW	1 cut(s)	152
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	3 cut(s)	518, 551, 563
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	110
XspI	CTAG	3 cut(s)	111, 141, 569
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.