Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005102.1

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Reverse (-)

62808 .. 67313

Gene Structure 4506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005102.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggagctgtcattttacttagatttaggtttttggagttatggagcaattgctacacctgagccaacggtgttgaaatttgaaaatggagagactattgattcagtgattgctgatgatgagatagcaaagatccagcatgaatttgatgcagcaaagcagagtttcctcaagattccacaggcagtcaaagaaatgcttaagataaatctggaagaggttgctagaaatctcaccagagtaccttttgttgcttgtaatagtagcttttgtgacctcgccgaaggtcgtcttctcaatcttccaaaacctacttcatttctttctctgcaattcaacgcagaacttggcgccatggccatgtccatcagaacaatcacaacaacaacagctcttactcccagcaattctagatcatcacaacttcatcaccacctcagattaaaccagagtgattcatgtcgttttctcggaaaccggagcttgccatcgtgctatacgagccttcagagagttcagattggcagcaagatcctgctaatggtggtcaacagcgttgaccccggcacccctcctcttccttctgaaccttccggtggttcttggaaaatgtggcttttaggtgtacttttctcagtaattattcccttaacgaagaacaaatggtacccattactcaagttgaaagaccgagtggagacggtgacggatgccgcagaagaagtggcggagctcgtggaaaaggtgtctgaggaagtagaggaggttgcggacgatatcggcaaccatcttcccgaaggtaaacttcgacatgctgccatgcgtgtggaggaattagctgacaaaacaggcaaggctgcggccatggcggatgatattattgagaaggttgaggaagtggagaaagaggtagactccatcactgacaaggccaacgagaaaaagaaagaagacaaaatcaaagaagcgagtaccgagcaagataatagtattaaaaatgagacagttgcagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

37.49

Weight (kDa)

4.96

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	666
AccB1I	GGYRCC	3 cut(s)	350, 566, 666
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	5 cut(s)	714, 728, 770, 860, 869
AclWI	GGATC	2 cut(s)	127, 526
AcoI	YGGCCR	2 cut(s)	357, 861
AcsI	RAATTY	2 cut(s)	77, 143
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	4 cut(s)	243, 627, 668, 973
AfiI	CCNNNNNNNGG	2 cut(s)	541, 596
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	76, 83, 337, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	6 cut(s)	7, 267, 392, 483, 733, 839
AluI	AGCT	6 cut(s)	7, 267, 392, 483, 733, 839
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	3 cut(s)	86, 692, 995
AlwI	GGATC	2 cut(s)	127, 526
AoxI	GGCC	3 cut(s)	357, 861, 930
ApeKI	GCWGC	4 cut(s)	152, 525, 815, 857
ApoI	RAATTY	2 cut(s)	77, 143
Asp718I	GGTACC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	3 cut(s)	226, 422, 715
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	3 cut(s)	350, 566, 666
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	1 cut(s)	734
BbsI	GAAGAC	2 cut(s)	284, 957
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	164, 537, 802, 844
BccI	CCATC	4 cut(s)	374, 496, 795, 926
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	3 cut(s)	86, 692, 995
BfaI	CTAG	2 cut(s)	225, 411
BfoI	RGCGCY	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	6 cut(s)	153, 526, 714, 816, 858, 861
BlsI	GCNGC	6 cut(s)	154, 527, 715, 817, 859, 862
Bme1390I	CCNGG	1 cut(s)	564
BmiI	GGNNCC	3 cut(s)	352, 568, 668
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	2 cut(s)	139, 700
BpiI	GAAGAC	2 cut(s)	284, 957
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	155, 662
BpuMI	CCSGG	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	354, 562, 864
BsaWI	WCCGGW	2 cut(s)	477, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 596
BseDI	CCNNGG	3 cut(s)	354, 562, 864
BseGI	GGATG	2 cut(s)	715, 877
BseLI	CCNNNNNNNGG	2 cut(s)	541, 596
BseMII	CTCAG	4 cut(s)	51, 451, 648, 741
BseRI	GAGGAG	2 cut(s)	564, 776
BseXI	GCAGC	4 cut(s)	164, 537, 802, 844
BseYI	CCCAGC	1 cut(s)	401
BshFI	GGCC	3 cut(s)	359, 863, 932
BshNI	GGYRCC	3 cut(s)	350, 566, 666
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	3 cut(s)	478, 564, 594
BslI	CCNNNNNNNGG	2 cut(s)	541, 596
BsmAI	GTCTC	3 cut(s)	86, 692, 995
BsmBI	CGTCTC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	359, 863, 932
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	132, 413, 531
Bsp19I	CCATGG	2 cut(s)	354, 864
BspACI	CCGC	5 cut(s)	714, 728, 770, 860, 869
BspANI	GGCC	3 cut(s)	359, 863, 932
BspCNI	CTCAG	4 cut(s)	52, 450, 647, 742
BspLI	GGNNCC	3 cut(s)	352, 568, 668
BspPI	GGATC	2 cut(s)	127, 526
BspT107I	GGYRCC	3 cut(s)	350, 566, 666
BspTI	CTTAAG	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	354, 562, 864
BssMI	GATC	3 cut(s)	132, 413, 531
BssNI	GRCGYC	1 cut(s)	351
BssSI	CACGAG	1 cut(s)	734
BssT1I	CCWWGG	2 cut(s)	354, 864
Bst2BI	CACGAG	1 cut(s)	734
Bst4CI	ACNGT	3 cut(s)	70, 703, 1006
Bst6I	CTCTTC	2 cut(s)	210, 582
BstACI	GRCGYC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	5 cut(s)	19, 60, 437, 634, 750
BstDSI	CCRYGG	2 cut(s)	354, 864
BstF5I	GGATG	2 cut(s)	715, 877
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	3 cut(s)	135, 416, 534
BstMAI	GTCTC	3 cut(s)	86, 692, 995
BstMBI	GATC	3 cut(s)	132, 413, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 866
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	562
BstV1I	GCAGC	4 cut(s)	164, 537, 802, 844
BstV2I	GAAGAC	2 cut(s)	284, 957
BstX2I	RGATCY	2 cut(s)	132, 531
BstXI	CCANNNNNNTGG	1 cut(s)	826
BstYI	RGATCY	2 cut(s)	132, 531
BsuRI	GGCC	3 cut(s)	359, 863, 932
BtgI	CCRYGG	2 cut(s)	354, 864
BtsCI	GGATG	2 cut(s)	715, 877
BtsIMutI	CAGTG	2 cut(s)	111, 921
Cac8I	GCNNGC	1 cut(s)	485
CfoI	GCGC	1 cut(s)	353
Csp6I	GTAC	4 cut(s)	242, 626, 667, 972
CviAII	CATG	7 cut(s)	140, 355, 361, 459, 812, 820, 865
CviQI	GTAC	4 cut(s)	242, 626, 667, 972
DdeI	CTNAG	5 cut(s)	19, 60, 437, 634, 750
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	3 cut(s)	134, 415, 533
DpnII	GATC	3 cut(s)	132, 413, 531
EaeI	YGGCCR	2 cut(s)	357, 861
Eam1104I	CTCTTC	2 cut(s)	210, 582
EarI	CTCTTC	2 cut(s)	210, 582
EciI	GGCGGA	2 cut(s)	743, 884
Ecl136II	GAGCTC	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	354, 864
Eco24I	GRGCYC	1 cut(s)	735
Eco32I	GATATC	1 cut(s)	778
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	2 cut(s)	354, 864
EcoT38I	GRGCYC	1 cut(s)	735
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
ErhI	CCWWGG	2 cut(s)	354, 864
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	7 cut(s)	143, 358, 364, 462, 815, 823, 868
FaiI	YATR	9 cut(s)	42, 141, 356, 362, 460, 498, 813, 821, 866
FalI	AAGNNNNNCTT	6 cut(s)	183, 215, 276, 308, 789, 821
FatI	CATG	7 cut(s)	139, 354, 360, 458, 811, 819, 864
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	6 cut(s)	153, 526, 714, 816, 858, 861
FokI	GGATG	2 cut(s)	722, 884
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	6 cut(s)	153, 526, 714, 816, 858, 861
FspBI	CTAG	2 cut(s)	225, 411
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	6 cut(s)	153, 526, 714, 816, 858, 861
GsaI	CCCAGC	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	359, 863, 932
HapII	CCGG	3 cut(s)	478, 564, 594
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	7 cut(s)	143, 358, 364, 462, 815, 823, 868
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	2 cut(s)	550, 559
HindII	GTYRAC	2 cut(s)	550, 559
HinfI	GANTC	4 cut(s)	101, 175, 455, 914
HpaII	CCGG	3 cut(s)	478, 564, 594
HphI	GGTGA	3 cut(s)	226, 422, 715
Hpy166II	GTNNAC	5 cut(s)	550, 559, 626, 803, 913
Hpy188I	TCNGA	7 cut(s)	371, 440, 473, 510, 519, 586, 751
Hpy188III	TCNNGA	4 cut(s)	172, 212, 411, 794
Hpy8I	GTNNAC	5 cut(s)	550, 559, 626, 803, 913
HpyAV	CCTTC	6 cut(s)	278, 515, 591, 600, 791, 880
HpyCH4III	ACNGT	3 cut(s)	70, 703, 1006
HpyCH4V	TGCA	3 cut(s)	152, 331, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 866
HpyF3I	CTNAG	5 cut(s)	19, 60, 437, 634, 750
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	7 cut(s)	143, 358, 364, 462, 815, 823, 868
HspAI	GCGC	1 cut(s)	351
KasI	GGCGCC	1 cut(s)	350
KpnI	GGTACC	1 cut(s)	670
Kzo9I	GATC	3 cut(s)	132, 413, 531
LmnI	GCTCC	4 cut(s)	4, 44, 480, 730
Lsp1109I	GCAGC	4 cut(s)	164, 537, 802, 844
LweI	GCATC	2 cut(s)	139, 700
MaeI	CTAG	2 cut(s)	225, 411
MaeIII	GTNAC	2 cut(s)	272, 703
MalI	GATC	3 cut(s)	134, 415, 533
MboI	GATC	3 cut(s)	132, 413, 531
MboII	GAAGA	8 cut(s)	227, 284, 293, 569, 667, 731, 782, 962
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	2 cut(s)	132, 531
MhlI	GDGCHC	1 cut(s)	735
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	7 cut(s)	48, 77, 143, 332, 406, 639, 833
MluNI	TGGCCA	1 cut(s)	359
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	908
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	4 cut(s)	201, 443, 650, 993
MslI	CAYNNNNRTG	2 cut(s)	359, 824
Msp20I	TGGCCA	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	3 cut(s)	478, 564, 594
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	501, 866
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	564
NcoI	CCATGG	2 cut(s)	354, 864
NdeII	GATC	3 cut(s)	132, 413, 531
NlaIII	CATG	7 cut(s)	143, 358, 364, 462, 815, 823, 868
NlaIV	GGNNCC	3 cut(s)	352, 568, 668
NmuCI	GTSAC	2 cut(s)	272, 703
NspI	RCATGY	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	101, 175, 455
PkrI	GCNGC	6 cut(s)	154, 527, 715, 817, 859, 862
PleI	GAGTC	1 cut(s)	908
PluTI	GGCGCC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	908
Psp124BI	GAGCTC	1 cut(s)	735
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	352, 568, 668
PsrI	GAACNNNNNNTAC	2 cut(s)	650, 682
PsuI	RGATCY	2 cut(s)	132, 531
RsaI	GTAC	4 cut(s)	243, 627, 668, 973
RsaNI	GTAC	4 cut(s)	242, 626, 667, 972
RseI	CAYNNNNRTG	2 cut(s)	359, 824
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	4 cut(s)	201, 443, 650, 993
SatI	GCNGC	6 cut(s)	153, 526, 714, 816, 858, 861
Sau3AI	GATC	3 cut(s)	132, 413, 531
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	2 cut(s)	139, 700
SfoI	GGCGCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	359, 824
SmlI	CTYRAG	3 cut(s)	170, 200, 677
SmoI	CTYRAG	3 cut(s)	170, 200, 677
Sse9I	AATT	7 cut(s)	48, 77, 143, 332, 406, 639, 833
SsiI	CCGC	5 cut(s)	714, 728, 770, 860, 869
SspDI	GGCGCC	1 cut(s)	350
SspMI	CTAG	2 cut(s)	225, 411
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	2 cut(s)	354, 864
TaaI	ACNGT	3 cut(s)	70, 703, 1006
TaqI	TCGA	1 cut(s)	808
TaqII	GACCGA	1 cut(s)	705
TasI	AATT	7 cut(s)	48, 77, 143, 332, 406, 639, 833
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	2 cut(s)	716, 863
TfiI	GAWTC	3 cut(s)	101, 175, 455
Tru1I	TTAA	4 cut(s)	201, 443, 650, 993
Tru9I	TTAA	4 cut(s)	201, 443, 650, 993
TscAI	CASTG	2 cut(s)	111, 928
TseFI	GTSAC	2 cut(s)	272, 703
TseI	GCWGC	4 cut(s)	152, 525, 815, 857
Tsp45I	GTSAC	2 cut(s)	272, 703
TspDTI	ATGAA	4 cut(s)	156, 306, 416, 447
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	2 cut(s)	111, 928
Vha464I	CTTAAG	1 cut(s)	200
XapI	RAATTY	2 cut(s)	77, 143
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	2 cut(s)	225, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.